mRNA_H-paniculata_contig1282.1775.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1282.1775.1
Unique NamemRNA_H-paniculata_contig1282.1775.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1282.1775.1 vs. uniprot
Match: A0A6H5JX16_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JX16_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 2.320e-56
Identity = 105/165 (63.64%), Postives = 128/165 (77.58%), Query Frame = 3 
Query:  159 SPFDSSEYS----KADAARREAEELEQLIRGRRGVVLEMIEREWKEALDKAVEVEGESFCHQAYEGYQNQGRGCIFVNVDMGLSSNSKGHKVAAASHVVYRPLEEVVMERSARVKPADQMQIIQRCQEYDPEAGFVLVFGYKGLLGVQVMRPSRPPRQVYQSRPT 641
            SPF+  E+     + D  +REAE+LE +IRG RG+V+E IEREW+E + + +  EGE  C  AYEGY ++GRG IFVNVDMGLSS++KGH   A  H V+  LEEVV ERS+RVKPADQMQIIQRCQEYDPEAGFVLVFGYKG+LGVQV+RPS  P +V++SR T
Sbjct:   69 SPFEDVEHGDNEDEVDVMQREAEQLEAMIRGSRGIVVEAIEREWREEMLRVLGEEGEMLCSLAYEGYLDRGRGVIFVNVDMGLSSSNKGHD-GAPCHAVFCSLEEVVTERSSRVKPADQMQIIQRCQEYDPEAGFVLVFGYKGMLGVQVIRPSMAPGEVFRSRRT 232
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1282.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JX16_9PHAE2.320e-5663.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1282contigH-paniculata_contig1282:17339..22277 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000920.1
Exons3
Model size1815
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1282.1775.1prot_H-paniculata_contig1282.1775.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1282 18477..22017 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.8777647-UTR-H-paniculata_contig1282:17338..184761622929002.8777647-UTR-H-paniculata_contig1282:17338..18476Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1282 17339..18476 -
1691480697.694863-UTR-H-paniculata_contig1282:17338..184761691480697.694863-UTR-H-paniculata_contig1282:17338..18476Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1282 17339..18476 -
1622929002.9417946-UTR-H-paniculata_contig1282:22017..222771622929002.9417946-UTR-H-paniculata_contig1282:22017..22277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1282 22018..22277 -
1691480697.759145-UTR-H-paniculata_contig1282:22017..222771691480697.759145-UTR-H-paniculata_contig1282:22017..22277Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1282 22018..22277 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.8929927-CDS-H-paniculata_contig1282:18476..186111622929002.8929927-CDS-H-paniculata_contig1282:18476..18611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1282 18477..18611 -
1691480697.7136672-CDS-H-paniculata_contig1282:18476..186111691480697.7136672-CDS-H-paniculata_contig1282:18476..18611Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1282 18477..18611 -
1622929002.907987-CDS-H-paniculata_contig1282:19764..199321622929002.907987-CDS-H-paniculata_contig1282:19764..19932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1282 19765..19932 -
1691480697.729841-CDS-H-paniculata_contig1282:19764..199321691480697.729841-CDS-H-paniculata_contig1282:19764..19932Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1282 19765..19932 -
1622929002.9222448-CDS-H-paniculata_contig1282:21903..220171622929002.9222448-CDS-H-paniculata_contig1282:21903..22017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1282 21904..22017 -
1691480697.7413833-CDS-H-paniculata_contig1282:21903..220171691480697.7413833-CDS-H-paniculata_contig1282:21903..22017Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1282 21904..22017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1282.1775.1

>prot_H-paniculata_contig1282.1775.1 ID=prot_H-paniculata_contig1282.1775.1|Name=mRNA_H-paniculata_contig1282.1775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MIEREWKEALDKAVEVEGESFCHQAYEGYQNQGRGCIFVNVDMGLSSNSK
GHKVAAASHVVYRPLEEVVMERSARVKPADQMQIIQRCQEYDPEAGFVLV
FGYKGLLGVQVMRPSRPPRQVYQSRPTISDRNDQDRVQ*
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mRNA from alignment at H-paniculata_contig1282:17339..22277-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1282.1775.1 ID=mRNA_H-paniculata_contig1282.1775.1|Name=mRNA_H-paniculata_contig1282.1775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4939bp|location=Sequence derived from alignment at H-paniculata_contig1282:17339..22277- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGGAAAAGCTGCGCACAGCTGCCAGTGCTGATATTAACAACGTTACTG
GCGGCTTACACTGCCCCTATCCGCGCGTTTGCTACCTTCCCTCGCATATC
AACATCGTCGAGGGTCTCATACAATGTCTCCAGCAGCAGGCGGAGATGCT
CCAACGCGTCCCCATTTGATAGCTCGGAGTACTCCAAGGCGGATGCTGCG
CGGCGCGAGGCTGAGGAGCTCGAGCAGCTTATACGCGGGAGGCGCGGCGT
TGTGCTTGAGATGATAGAGCGAGAATGGAAAGAGGCGTTGGACAAAGCTG
TGGAGGTGGAAGGAGAATCATTTTGTCACCAAGCGTACGAGGGGTACCAG
AATCAGGGCCGCGGGTGCATCTTTGTGAGTTCGCTGCTATCGGTTGGTGT
TCAGACGGAATCATGTGGTCTTGTATACCAAGCCTGGAGTGCTGTTGGCG
TCAGTCAACCCCCCCCACCGTGCAATCAGTATGTCACCCTAAATAGCTCA
TCTGCATAGTCTTTGTTGCGTTGTTGTTTTTTCGTCGCGGACTGATTCCT
CCTATCAAGAACCTCCGGTCCGAAGGTGTAAGTGTAATGCCTTGGTTCTT
GCCTTGTATTTTCGCGCGGTGGGGCAGCAGTGCCATCCGCTTGCCGACGT
TGCGTGATATAGCGTTTCATGCTCGTCGTAGATGTCATTGCTCGATGACT
TGACTGTCCGTGAACGTGCGACAGTTAGTGACGCTCTCTTGACCCGGTAC
AAGAGGGCACATATCTCAATTTCGACATGATAGACCCCACTCCTGCTTGA
GCCCCATAAACAGTCGGAAGTGGGAGCGGACTCATATTGCATGCCGTAGT
TGTTAGAGCATGAACCCCGCTTCCTCGGGAGGGCGGAGGTCTGGTCCTAT
TAGAGCGATTTCCGATAGCCAATCGCTTTTTCCTATGTTACCAAATTAAC
CTCTAGGATGTTTTACCTACCCTTTTCACGTTGCATTTAGTTTTATCTCG
TGACATTCGGCTTTGTGCAGCACACACACCCTGTAGAGTACAGTTACTCA
GGATGTGGTCTGTGCTTCGCAGTTCAATCAAGTGCTGCTGTCGTTGAACG
CAAAATCATGTCATCTCCTGTTTGTGTGTCTATGTAAATATAGGACTGTC
TTGTTACTCTCTAAAGAGCTCATTATTCCCATAATCATGCCGTGGGTGCT
CGTTGGGAAAAAACAAATGTGGTTCTTCCTCTTGTTATCCGAGCAGGGGT
TTATTGGGGAGTTCGCAGAATCCGGCACCTAACGAGTCATCAATTCAAAT
TTCTACCCTTCATATGCCTTCACTTACTATTAATATGGGATTAAATCGAC
TGTATCCCCGCTTTCAGACACGTATGCCCACTAGAACCCCCCCACCCCAT
ATTCTGAGTATTATTTCATCGAAATGATCCCTGTAACGCGGACGTTTCTG
TACTATTTCCGCACTTCCGCGGCCACTGACAGCGGGTCTGAGTGATCCAC
ACGAGACAATCTGGACAATGTAGAGGGTCGAGGGACTACACCGGGTAAAA
CTACGTATATCAGTGTGGTCAAACGGCAGAGAAACCCCTTAAGCTTAGCT
CGTGAACTGAGCATGACTAGAAGTCTAGTCAGAGATCTTTTAGTGGCTCC
AACCCCCACACTGCCTATTTGGTTCGGCCGAACCGGGGTGGCGCCTACCC
CGCAGAGGAACAAATAACTCTGTTCTGTAAAGGAAACGTAGAAATACTTC
GGTATGGACGCATCGGATAAAGGTTGTTGCCTTAGCCTTCCGGGGGTTAA
AAAACAAAACAAAACGCTTAAGCTCGTAAGGGAGGGAAGGAAGGGAGGGG
TTCTATGTTGTCGAAATTGAGACATACGTACCCCATTGTGCGGCTAGTAG
GAGAAGTCGTTTGAATTCGAATTCATCGATGACCCACCCACGAGATAGAA
CGGGCTATGCTACATGGGTAGAAGTTAGGATCTTCGAGTGTGCCCTCGGC
TTGTTTGATAGCTCGGCATCATTCAGGCATTTCCAAAGGAAGAGTGAAAC
AACCAATAAATCTTCAGAGGTGTGAAATCAAACTCATATACAGCACACCG
TAATTTAGCGATCCTTGATGTCGATATCATCGCATTTCCTACTACCGCGA
TTCCATCGCTGATTTGCACACCGTGAAAGCCTCCACACCCGTGAGTTGTA
GCTGCAAATATCAGCACAGACGGTCAGCACAGTCGATGTTTTTTTGGAAT
AGCCACTCCTTTCGTTGTCCTTTGTGTATGTGTGTGTGCACGTCAAAACG
TTTCACGTCGTACTCTCTCTACACACCCTTTCACTTTTCAACAAGGTGAA
CGTAGACATGGGGCTCAGCAGCAACAGCAAGGGGCACAAGGTCGCAGCTG
CCTCTCACGTAGTGTATCGGCCTTTAGAAGAGGTTGTCATGGAGCGATCG
GCCAGAGTGAAGCCTGCAGACCAAATGCAAATCATTCAGCGCTGTCAGGA
GTATGACCCAGAGGTGAGCATACGGACCGAACCGGGTCTAGCCGGAAAGG
ATTGATTGGGATATATTTTCTATTTTCCTGCATGAATATAACGGGGGTAG
CACATAGGAAAACGCATCCAATGTCGTTTCAGTAGCTCTGATGATCACGA
AGTAAACGATACCCCATCTTGTGAACTGAACAAATATTATTGACAATGTT
CGCTGTTCTCGCGGCTCAGTTTGTCGAGTCTACCGAATCCGTAGACCCAC
GGTTAGTACACCCGGCTGATTGGTAGATGAGTATTTCAAGCTCGGTTTCT
CGAGAAACACGACCCGGAACAGTCAAGATATTTCAACGGCAAAGCGTTTT
TATGTCGCACTACTGTGCTGTGGTGTGTGTAAAAGCCGACCTTGAAAGGA
TCCAACAACTGACGGTGGTTCACCGTATAAACTGCGGTATTTACTAGAAA
TTACCGAGCCTTGAGTGGGCAGCGATACCAAGCTCACAATTTAGATGTAC
TGGTGAAGCCCATTCGATGAGTGTGGTGGTAGTATAATTAACATGAATAT
ATTCTTCGGCTGCTTGATGCTTTTGGTTCTCGCGTTGTGACATGTTACGC
GAATACCCCGAGGCCCGACGAGGATGGATGTGCGCAGTCTTGCAGTATAT
ACATGCCCCTTCAGCTTTTCTCGTAGTCCTAGCACGTATCAACCCTACGT
TGAAAAAAGTTAAACTTACAAACAGCGTTCAACTCTGGCATCACTGCAAG
ACAACTCTGCTATGTCGTAGTTGGCCGATCGTTCGCGTTTGCTTGTACCA
TACGTGACATGTACACTTTTCTTTTACGCTTGGCTGTAGCGTTGCATCTT
TTTTTAGGTTTCGTGCGATATACTCGTACATGCCTTCACCACCGTCGCTT
TCGTGTGACTGAGTTCTGACTCGTGTGCAAAATCAACAAGGTTGAAAGAA
GTTCGAAACGATGTTCGCCTCGGCCTTTACTGTAGCATATGATGAGGATC
CCCCAAGGTTGTCTTCGGTTGATTTCCGCTTTGTTCCTTTTTATGATCAT
ACTACAAACCCTATATTTCAGTGGTAATGGGTGTCGCAGTGAGCTATTCC
TCTCGCGCGTTGTACTTATTTCCCTGCTTCCCCGTTTCGTCTTGTACTTC
GGCGCGCAAAAAATAGGCGGGTTTCGTGTTGGTCTTTGGTTACAAAGGAC
TTCTTGGTGTTCAGGTCATGCGACCGTCACGCCCGCCGCGGCAGGTGTAC
CAATCTCGACCCACCATCAGCGACAGGAATGATCAAGATAGAGTGCAGTA
GTTATATCATTTTTGCCGTGATGTGTAACCGCATGAAGCTGTTGACACAG
GTCTGGAATTTTTGCAGTTCATGCATGCCGAGTCTCAATCATAAATGGTA
AGGCTGGGTCACGGGTGAGTTCATAGTTCTCTGTAAGGGACGTGTCTATG
GGTGTTTCATAGAAGATACGGTAGAAATGAAAGTACGTGCCGTTTTCCAA
ACAAAGCCAGAAAAGGGCAGAGAAAAGAAGAGTGTGGCCAAAGGGAGAAG
TAAACGATTCGCCTCCCCTACATGTGTGTCATATTCTGTAAGGGCGGGCT
GGACCGGCTCTGACTTGGTAAGCTGCTACGGAGAGATGGAAGTTCTGTGT
TGCCTTCACTATGATGCCGCTTCCATTGTTCGCGTATCCGAACAGACGAG
AGCCTCTAGTCGCTGTGAATTTTTTCTTGCTTTTAGAAGGACTTGGGAGA
GGGAGGAGAGTAGCCTAGAAAAGTAGTCAACTCGCCAGGTCATTCGTGAA
AATGTACGGTGTTTCAAGTGCATGTACTGGTCACGCTGAGGTTACGTAGT
CTGCGCCCACTGTTACATATACTTGGCGAGGAACCTTGACACAACATATA
TAAGGGAAATAAGGGAATGTTGCGCCATGCACATTGGTTTCAGTCGACGT
AGATCCGCGAGAACATCTTGCGGGATGAGATTTGCATTCGTTTGGTTTGT
TTCGTGTGAGATTTTGCGGCCTCCTGCCTGTTTTCGTTTTTCTTTTTTCA
ACTATTACGTCCTATTCGCACCTACCGCGCGAAGCGCTGTGGAGCTGTGG
CGATATACATAGGTAAATCTCTCACGGGTATACTTGGTTTAGGGTGACGC
CGTAATGCGTATTGTTTAGGGGTTCTCGTGAAGAAAATATACATAATTTC
CGCCGTTCGCCGGTGCATTCCAATTTCGGCGTTGCCATGATTTTTCTCCT
GGGTGGGTTCTATCTTCGAGAGTGTTCGGGATTTCGGTTTGGCGCTACTA
CGGTAGCGTTCTTGATGCTGGCCAGGATCGTTTTGTCCCAGTAATCCCTG
ATGGTGGTCAAAGCTCTGGGACCATTTTTCCAGGGATTTCTCGGTGGTAA
TACCGAGGTAAAATTACCGCGGTATTGCGTGGTATTCGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1282:17339..22277-

>mRNA_H-paniculata_contig1282.1775.1 ID=mRNA_H-paniculata_contig1282.1775.1|Name=mRNA_H-paniculata_contig1282.1775.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig1282:17339..22277- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAGAGCGAGAATGGAAAGAGGCGTTGGACAAAGCTGTGGAGGTGGA
AGGAGAATCATTTTGTCACCAAGCGTACGAGGGGTACCAGAATCAGGGCC
GCGGGTGCATCTTTATGATAGAGCGAGAATGGAAAGAGGCGTTGGACAAA
GCTGTGGAGGTGGAAGGAGAATCATTTTGTCACCAAGCGTACGAGGGGTA
CCAGAATCAGGGCCGCGGGTGCATCTTTGTGAACGTAGACATGGGGCTCA
GCAGCAACAGCAAGGGGCACAAGGTCGCAGCTGCCTCTCACGTAGTGTAT
CGGCCTTTAGAAGAGGTTGTCATGGAGCGATCGGCCAGAGTGAAGCCTGC
AGACCAAATGCAAATCATTCAGCGCTGTCAGGAGTATGACCCAGAGGTGA
ACGTAGACATGGGGCTCAGCAGCAACAGCAAGGGGCACAAGGTCGCAGCT
GCCTCTCACGTAGTGTATCGGCCTTTAGAAGAGGTTGTCATGGAGCGATC
GGCCAGAGTGAAGCCTGCAGACCAAATGCAAATCATTCAGCGCTGTCAGG
AGTATGACCCAGAGGCGGGTTTCGTGTTGGTCTTTGGTTACAAAGGACTT
CTTGGTGTTCAGGTCATGCGACCGTCACGCCCGCCGCGGCAGGTGTACCA
ATCTCGACCCACCATCAGCGACAGGAATGATCAAGATAGAGTGCAGTAGG
CGGGTTTCGTGTTGGTCTTTGGTTACAAAGGACTTCTTGGTGTTCAGGTC
ATGCGACCGTCACGCCCGCCGCGGCAGGTGTACCAATCTCGACCCACCAT
CAGCGACAGGAATGATCAAGATAGAGTGCAGTAG
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