mRNA_H-paniculata_contig12817.1772.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12817.1772.1
Unique NamemRNA_H-paniculata_contig12817.1772.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: D7G4T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T3_ECTSI)

HSP 1 Score: 133 bits (335), Expect = 6.520e-37
Identity = 64/77 (83.12%), Postives = 74/77 (96.10%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFPEISSQV 233
            VNFLALDFDLTI++IHTSGRWPGTPEQL QRIRPFFQALIP+AVA+G+++GVVTFSPQVSMIS VL+VAFP ++SQV
Sbjct:   18 VNFLALDFDLTILNIHTSGRWPGTPEQLTQRIRPFFQALIPIAVAKGIHVGVVTFSPQVSMISSVLKVAFPHVASQV 94
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: A0A7R9VGD8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VGD8_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.050e-19
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFPEISSQVHRVDVHVHDG 263
            VNFLALDFDLTI+D HT GRW G   +L   +RP F+ L+PVA+A+  ++ +VTFS Q S+IS V+ + FP+     HR ++ VH G
Sbjct:    7 VNFLALDFDLTIIDEHTGGRWEGQVTELVAHVRPVFKDLLPVAMARNFFIAIVTFSSQESLISEVMTMTFPKF----HR-EIPVHGG 88
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: A0A7S1BZL6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BZL6_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 7.090e-19
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFPEISSQV 233
            +NFLALDFDLT +D+HT G+W GTP++LA  IRP F+ LI  A A  + + +VTFSPQV  I  VL   FPE  S++
Sbjct:   41 INFLALDFDLTTIDVHTGGKWEGTPDELASHIRPIFKHLIARAHAANIAIAIVTFSPQVRHIGSVLDKTFPEFGSRI 117
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: A0A7S1G1M2_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G1M2_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.440e-18
Identity = 42/77 (54.55%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFPEISSQV 233
            +NFLALDFDLT +D+HT G+W GTP++LA  IRP F+ LI  A A  + + +VTFSPQV  I  VL   FPE  S++
Sbjct:   41 INFLALDFDLTTIDVHTGGKWEGTPDELASHIRPIFKHLIARAHAANIAIAIVTFSPQVRHIGSVLDKTFPEFGSRI 117
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: A0A6S9F1B3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9F1B3_HETAK)

HSP 1 Score: 87.8 bits (216), Expect = 6.990e-18
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFPEISSQV 233
            +NFLALDFDLT++D+HT GRW G    L   IRP F+ LIP A+  G+   +VTFSPQV MIS VL  AFP    Q+
Sbjct:   42 LNFLALDFDLTVLDVHTGGRWLGRAADLTPHIRPLFRHLIPAALDAGLKTAIVTFSPQVHMISAVLEEAFPGKGGQI 118
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: A0A7S2GVH3_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GVH3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 7.400e-18
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFPEISSQVHRVDVHVHDGF 266
            +NF+ALDFDLTI+D HT GRW GT ++L + +RP F+ LI  A++  +++ VVTFS Q  +IS VL+  FP  S     VD+ V  G+
Sbjct:   66 INFMALDFDLTIIDEHTGGRWKGTSKELTEHVRPLFKTLIETAMSHSIHVAVVTFSGQTRIISEVLKTTFPNAS-----VDIPVRGGY 148
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: A0A7S3V6R1_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V6R1_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.260e-17
Identity = 40/77 (51.95%), Postives = 54/77 (70.13%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFPEISSQV 233
            +NFLALDFD TI+DIHT GR+ GT  +LA+ +RP F  LI  A   G+ +G+VTFSPQV  I  V+ + FPE + ++
Sbjct:   24 INFLALDFDQTIIDIHTGGRFKGTTTELARHVRPMFAQLITCAHDAGINIGIVTFSPQVQQIGHVMEIMFPEFAHEI 100
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: A0A7S4QG65_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QG65_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 1.350e-17
Identity = 39/75 (52.00%), Postives = 52/75 (69.33%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFPEISS 227
            +NFLA+DFD TIVD+HT G+W G+  +L+  +RP FQ LIP A+   + + VVTFSPQ   I  VL + FPE S+
Sbjct:   27 INFLAIDFDQTIVDVHTHGQWKGSAHELSTHVRPLFQHLIPAAITADIKVAVVTFSPQCGQIKDVLEIIFPEFSN 101
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: A0A7S0CHW4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CHW4_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 3.210e-17
Identity = 39/73 (53.42%), Postives = 53/73 (72.60%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIP-VAVAQGMYLGVVTFSPQVSMISRVLRVAFPE 218
            +NFLA+DFDLT++D+HT G W GTP +LA  +RP F+ L+   AV  G+ + +VTFSPQV  I  VL+V FP+
Sbjct:    9 INFLAIDFDLTMIDVHTGGTWKGTPMELASHVRPLFKQLVTEAAVNGGIKIAIVTFSPQVRNIGDVLKVTFPD 81
[Close]
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Match: F0YMD5_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMD5_AURAN)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-16
Identity = 39/71 (54.93%), Postives = 55/71 (77.46%), Query Frame = 3 
Query:    3 VNFLALDFDLTIVDIHTSGRWPGTPEQLAQRIRPFFQALIPVAVAQGMYLGVVTFSPQVSMISRVLRVAFP 215
            +NFLA+DFDLT+VD HT GRWPG+P +LA R+RP  + L+  A+  G+++ +VT SPQV +IS VL++ FP
Sbjct:   11 INFLAIDFDLTLVDTHTEGRWPGSPSELAARVRPNLRHLMNEAMDAGIHVAIVTLSPQVPLISAVLQLIFP 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12817.1772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4T3_ECTSI6.520e-3783.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9VGD8_9STRA3.050e-1950.57Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S1BZL6_9STRA7.090e-1954.55Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1G1M2_9STRA2.440e-1854.55Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A6S9F1B3_HETAK6.990e-1855.84Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2GVH3_9STRA7.400e-1847.73Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S3V6R1_9STRA1.260e-1751.95Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S4QG65_9STRA1.350e-1752.00Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S0CHW4_9STRA3.210e-1753.42Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
F0YMD5_AURAN1.880e-1654.93Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12817contigH-paniculata_contig12817:1262..6344 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionHAD-like domain
Ec32 orthologEc-20_000460.1
Exons2
Model size651
Cds size159
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12817.1772.1prot_H-paniculata_contig12817.1772.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12817 1611..1769 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.5604646-UTR-H-paniculata_contig12817:1261..16101622929002.5604646-UTR-H-paniculata_contig12817:1261..1610Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12817 1262..1610 -
1691480697.5842648-UTR-H-paniculata_contig12817:1261..16101691480697.5842648-UTR-H-paniculata_contig12817:1261..1610Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12817 1262..1610 -
1622929002.5883539-UTR-H-paniculata_contig12817:1769..17711622929002.5883539-UTR-H-paniculata_contig12817:1769..1771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12817 1770..1771 -
1691480697.6033475-UTR-H-paniculata_contig12817:1769..17711691480697.6033475-UTR-H-paniculata_contig12817:1769..1771Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12817 1770..1771 -
1622929002.606268-UTR-H-paniculata_contig12817:6203..63441622929002.606268-UTR-H-paniculata_contig12817:6203..6344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12817 6204..6344 -
1691480697.610766-UTR-H-paniculata_contig12817:6203..63441691480697.610766-UTR-H-paniculata_contig12817:6203..6344Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12817 6204..6344 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.573695-CDS-H-paniculata_contig12817:1610..17691622929002.573695-CDS-H-paniculata_contig12817:1610..1769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12817 1611..1769 -
1691480697.5950954-CDS-H-paniculata_contig12817:1610..17691691480697.5950954-CDS-H-paniculata_contig12817:1610..1769Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12817 1611..1769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12817.1772.1

>prot_H-paniculata_contig12817.1772.1 ID=prot_H-paniculata_contig12817.1772.1|Name=mRNA_H-paniculata_contig12817.1772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=53bp
MYLGVVTFSPQVSMISRVLRVAFPEISSQVHRVDVHVHDGFIVLVTCVVI
LV*
back to top

mRNA from alignment at H-paniculata_contig12817:1262..6344-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12817.1772.1 ID=mRNA_H-paniculata_contig12817.1772.1|Name=mRNA_H-paniculata_contig12817.1772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5083bp|location=Sequence derived from alignment at H-paniculata_contig12817:1262..6344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTCAACTTTCTGGCGTTAGACTTCGACCTCACAATTGTTGACATTCAC
ACGTCGGGGAGATGGCCCGGGACGCCGGAGCAGCTCGCGCAGAGGATCCG
CCCGTTTTTTCAGGCTCTCATTCCGGTGGCAGTTGCCCAGGGTGAGTTAA
GTCAGTCAGTCCCGTCCAGTTGCGGCCAGAGTAAACATATGCACTGTACA
TGAGCGAAGCTACAGTGGGGGGGGGGGGTAAATCTTGATAAGGAAGCATC
ACTGTATCACTTGCATGTGTACTGTACGTGAACATGAAATGTTTTTCATA
TGTGAATGACTGACACCGCAGAAGTTAAGACCCTTTCACCCTCGAAGCTT
CTCGTTGTACAATGTCAAGCCATTAGCTATATTCTGGTTGAACATTATTT
CTAACGCGCATACAATAAACCCCATTGTACCCTATGCTGAAAGTTATTCC
GCTGATCTGAAACTTGAGTTGCGTATACCTGTCAACAGAATTAGATCAAT
AAGGGTACGTTCAACGAGCGCCGCTTCCCAAAACGGTTCAAGACATTAGT
CAAATCGTAACCTATTCAATGGCGTGCATTCAAGCATCCCTGGAGGTGTG
CAATGCACGATCCGGAATGGTTGTACTGTAGAAAGGAGGGAATGTACATT
TTGCCTCGTCGCTCCTCGAAGCGGCTCGAAAATTCAAACAGATCGGCTCA
AAATACTACCCCCGCCCCACCCACCCACTCCCCTCACCCCCTCCCCCTAC
TGCCGCCCCACTTACATGGGAAATCGTACGTGATGTAAGCAAAACATGAA
TTTACAATTTTTTGCGGTCATTGGGTTAGTAATTAGTTAGCAACCGCGAA
ACCCAGAGGTATCAATATCACGGCGGTGCGAACGTTGTTTCAATGCGACT
ATCTCGGGAACGGAGATATTAAGCGGACGAAAGGAACCATCAATCGACAG
ATAGATCTCCGCAAGATCTTCCCAACGGTACACTAAGATTCATTGTCAGC
AGCGTCGTCGTTGTCGAGACGAGGGCGTTTGAATAAAGCATTTTCACCCT
GGCGGATAACATATTATATCTCCTGGATTTATGGTAGTTGGATAGTTTGT
TCGACGGTGTTACGGTTGAAGGAGGTCCTTGGTGGCCACCGGGGCCTCCT
GCAGAAGCCACCGAAGCCTTTAGGTGAGTGATGGTGAAGATAGTTGGTGA
GATGTGTGCAAGGAGAGTCAGGTTTGGCCCCGGCTAGGGAGGGGACAAAA
TGTTTCAGGGTGACCCAGGCGCAGAAAGCAGGGCTCCGATAGGGCACCCT
GTTGCAAGAGCTCGGACCAACAACTGGATATAGAGATCCCTGCGGATTTG
ACGATTCAGACGAAGAGTCGGTCCGTAAGACGTCACTCCGGATAGTTTGG
AAACCGACTGTGGGTGTATTTGTATCTTGGTGTACTTACTGTATGTGTGT
TACGGTATGGCATCTCCGCGTTATGAGGTACTTCATCCGAAACCCCAGCT
TCCACAAACGGCCATGTTACACGTTTACACGTTGTCCCTCCCTCCTCCGC
GCGCTCTTTCGCATGCATAATAGTATCCTCGAACTTTTGTGTTTGTTTTT
TGAGGGTTCCGCCAATGGACAAAACGAGTTGGAGGGTTCTCCCGAAAATG
TATTCCTCAATTTCTCCCTCTCTGTTTTAGGTCTGCAAAATTGGATATGG
GACAATCGTAATTGTTGATGTAATGTGTTAGATGCACTGTTGCAAAAACT
GGCAGAGCGTTGGAGTAAACCCCTGTTTTGATCATTTCCGCCGTATCCGA
AATAGATATCGGGAATATTATATCTCTGAACTCAAAAGGTTTCAAGACGC
ATGCGCAGGATTCATCAGTTGTTGCGTGAGCGGTCCCGAGTTGAGAATGC
ATACTGGCGGTTAGTAACTTACGGAGCTGGTTCATCCTTCGCTCAAACGA
AAAATGAGAAGTGCTCTAGAGGTCGTCGGTTTGGTATGTTTGTGAGAGAT
GGATGTGTTCGATGGGCGGACTGCAAAAGGAACTTCACGGTTTGCTGTCG
GTGGGATCGGTTTGCGAACACGCTTCATCTGGTGTTAGCTTGCCGTTACA
TGTCAACAGTTACCTCTGAGTCTCCACTTTGTCGGAATGCAAACATAATG
ATCAGTACTGCGTGACCTGACATAACAGTCCCTAGCTTGCGCACGATTTG
CTGAAAAGTTACCAGCAGTAGTTTTTTATACTGCCGGTATGGAACAGTCG
CCAACATTAGTGTTTTCGTCACGATTCGCTCGAAGAGTTTCGTGTCATGA
AGGAGACGCATGAGGGCTCCGGCGAGGCACACGAGAAGGGAGAAGGAGAA
AGGACGAGGTTCGACGTCACTATCGACTCCCGAATTTGTACCCAGACAGT
TTGTGTTAAATTACGTGTTTTGCTAAACATGAATGGAGAACATGCCGTAG
GTTCAAAGCGCGAGGAGATAGATCCTCATGCGGCAAGACAGAGCGACCCC
CTTGAACGGGGCTCGAAAACGCCTAGTAAATTGAATGTAGCAGGGAGGTG
GGGAGGGAGGGAGGGAGGGAGGAGCGGGGGGGGAAGACACAGACAAAGAG
GGAGTAGGTAACCACGAACTCCGTTAAATGTAATGCGTTTAATTGTTGAA
TACTTATTCTTCCGGGGGGGGGTTATGGGAGGTTATATCATTTTCTTTTT
GCTTCACATTATATCGGATTTTCTCGCCAGGAGTCTTAAGCGTGTTGTTG
TTGGCTGTAATGCTGTCTTTTTCTCTGGGGTCTCTCAGTTACCTTTCAAG
ATAATTAGAGTTTGTCATTAGTTTTCGTGCTTCTTCCTTTTCTTGCGACG
ATTGTCCGTCATCATGTACCATAGACGTGCTTTCACGTACTGACCACGCC
GGCAAAAAATGCGGTTGTGTTTTATTCAAGAGTTTTGTGGTGTAACGTGG
TGTGGTGTGGTGTGGTGTGGTATGGTGTGGTGTTGCAGTTTGCCTTCAAA
CTTCGAACTTGGTTACTCTGTCGAAGGGGCTAGCTGTGCCCGGTGAGTCG
CCTCCTTGTGGGATTCCCGTATCAAGCCGTACGTGCATCCCACGTGGACG
TTATGGCTGTATCATGTGCTTGGGCACCGAAATACCAAATACCAGATATC
GTACTGCACGATACCGAGAAGACACGAGACCGTACCGTACCGTACTCTGG
TGGAAAAGAAACGAATACCGTTGACTGCGCAAATACGAAGAAATCAATAT
ACCGTACCCGTGTTACCAATGTGCCGAATATGGTTGGTTTACCGACATGA
CACCAAGAAAATAATTCCTGGCACCGTTTATTCATTTAAAAAAAAACGTT
ACCGAGAATACCCTTGATTTGTGTATCCTTTAAGCGCCGGATTAAGCTTT
TTCGGAACGTAATCATGCGTCTGAGAACAGATGTGGAGCGCTGCAGTCGT
CGTGCACAAAACCATGCCAACTGCACTCCCTTTCTGTCATGTACGTTCCA
CCTGTACTGGACTATCTGAATAGCAGGAGCTTCAGATCCCCATGTAATCA
TGTCATGGACGTCGCTTTCCCCTCTTGTTGAGGTACCTGGCAAGGATATG
ATCATGACTATCAATAGATGCAAACCGGCGCTACGCGGGTCAGATGCGAT
CAGAGGTAGTGGGCTGGCTCATCGTGGCAATGGTTTCGCGGTAGAGCATG
CCTGGGGTTCTAGAGAGCCGATTGATGTTTGTGATGCCCAGGGCATGTCT
CGGACTGCGAAGTAGACGTAATTTAAGACATGAAGGACATGGCGGAAATT
TTAACCAGTGCAAAAATAATCCTTGACATTACTCAGCGTACCCCGAATCC
GTTCGGTGGTTATTGTCGCGTCTCCTAAATTGCATGTTCCTCATTCCTCT
CCCCCAATCATGGATGGCAAAATGAAAACGATAACGATTACCACTTCAAG
GTCGCACCATTGGATTAGTTAGACCCCGGGCTATGTTTGAGCTAGCGTTC
CAAAACACGAGTACACTATGAGTGCGTACAGGAGGCTGTACAATGGACGT
TTTATTTATCCCCTATTTACTGTCCTATGTGTCATTGCATGCTCCGACGG
TTGTCTCGAAAGGGAAGAATTTTGGCTGCATCGTGTCGGTCATAAAAAAT
ACACATGAAGGATAGATATAGTGAGTAACCATTCACTGAGAACATCACAA
TATATATACCTCCCCAGGGTACATACAGACACTGGTATACAGTGTCTATG
CAATACGAGTTTATATTTATGTAACTGGGGGGGGTGTTTTATACACCCAG
TAGGTCCAATACTTGTAGTGAAGGCTTCTTCACCTCTCTGGTCTGTGTTA
CCCGATACCTTCTCGAGAGGAACAAGAACAACTTGATTCAAATCTCGACA
AGTAATCCACCAGCCTGGAGATGCTGAGCACATGCCTGTTTTGTTTTACC
GCCCCCCCCCCCGCCCCCTCCCTCCTAGTCCCCGCTCGGCTTTTTGCCAG
CCTGCCTGTCCCTATATCTTTGACGGGCCTTTCCTCTGCTTCTATCTCCC
CCCTCTTCGTCTGCGTCCATCAGGAATGTACTTAGGAGTGGTAACGTTTT
CGCCGCAGGTGTCTATGATCAGCAGAGTGCTCAGGGTTGCATTTCCTGAA
ATTTCGAGTCAGGTACATAGAGTAGATGTGCATGTTCATGATGGCTTCAT
TGTGTTGGTGACTTGTGTGGTTATTTTAGTCTAGGCGTGAGATTTCCCGA
CCGGTCGGTCTTGATCGATGCACAAATCACAAAGTTCACAGCTCGAGTAG
AAGTGCAAGCGGCAAATTCGTTTGCAACGAGAGATGTAATGCAATTGACG
TGTGGGTATAGGTTGTCACACCGTTTTGTCGGTTCGCCTGTGTGTATGTC
CCATCGGCAGTAGGTTTTGCCTTGTGCCTCTAGCGCTTGTAGTTTTTGAT
TGTGTTCCAAGTGTGCGTTGTACTGTGGTTGAAATGGCTGTTGTGTGCGG
GTGTGTATGGTTTTGGAGATATTTGTGAGGCATTTTTGAACCAGAAAGTA
CCCCTTCGTACCTGTGTGTCTACTCAGTCAGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12817:1262..6344-

>mRNA_H-paniculata_contig12817.1772.1 ID=mRNA_H-paniculata_contig12817.1772.1|Name=mRNA_H-paniculata_contig12817.1772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at H-paniculata_contig12817:1262..6344- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACTTAGGAGTGGTAACGTTTTCGCCGCAGGTGTCTATGATCAGCAG
AGTGCTCAGGGTTGCATTTCCTGAAATTTCGAGTCAGGTACATAGAGTAG
ATGTGCATGTTCATGATGGCTTCATTGTGTTGGTGACTTGTGTGGTTATT
TTAGTCTAGATGTACTTAGGAGTGGTAACGTTTTCGCCGCAGGTGTCTAT
GATCAGCAGAGTGCTCAGGGTTGCATTTCCTGAAATTTCGAGTCAGGTAC
ATAGAGTAGATGTGCATGTTCATGATGGCTTCATTGTGTTGGTGACTTGT
GTGGTTATTTTAGTCTAG
back to top