mRNA_H-paniculata_contig12816.1771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR) HSP 1 Score: 165 bits (418), Expect = 1.780e-41 Identity = 103/279 (36.92%), Postives = 151/279 (54.12%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRC--LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDK-LDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISA--PGSTDKPSEP--HGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
P A + ++R + +LA + D EL+ MDV AYLN + E+L + LPP DIP C L+KSLYGL+Q+ WN T D L +G R + CLY R +GG+ LV VYVDDL++A +DE K ++ F+++DLG S+VLGI +RR +SQ + VLK G ++C+ V T + + +++A P + D +E + + Y +V S MYA TRPDIAYA R +P R + + + YL DL++ F
Sbjct: 1089 PVANLESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPD----GVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRPDIAYATGLLGRFSTNPKRCHWEAAKRVLRYLKGTRDLELQF 1361
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS) HSP 1 Score: 157 bits (397), Expect = 4.380e-40 Identity = 84/280 (30.00%), Postives = 152/280 (54.29%), Query Frame = 3
Query: 246 FL*NQCPGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDK-LDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITFG 1082
F P R+ T R + ++AV+R+ + GMDV AYLN ++E + + PP++S S ++ + LYGL+QS WN L+ +G+G R ++ C+Y + D G ++VAV+VDD+ + D+ + K + ++ V D+G + ++LG+ + R GT T+SQ ++ +VL+ G ++C+ V ++ +++ + D Y V S MYA+ +RPDIA+AV + ++++++P E + + +F YL D IT+G
Sbjct: 62 FFETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAHLKLM---LYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGP--IIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPAGDSRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTELSKYVQNPAAEHVTALKRVFRYLKGTLDSGITYG 336
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A4C1SXU4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SXU4_EUMVA) HSP 1 Score: 160 bits (405), Expect = 7.010e-40 Identity = 95/273 (34.80%), Postives = 146/273 (53.48%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIA-GRGDKLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
P R STLR + +LAV+ L MDVD AYLN+ + +E+ +K PP F + +R L K++YGL+QS WN LD L + R ++ PCLY + G +L+AVYVDDL++ L+ K I+ F+VKD G L+H+LG+ V+ G +SQ + VLK YG ++C+ V +E ++++ K N +Y+ +V + MY + TRPDI ++V + A+ DP E + I YL+ DL + +
Sbjct: 582 PVVRYSTLRLLLALAVKNKMHLHQMDVDTAYLNSDLHDEIYLKQPPHFVDETSPRKVLR-LHKAIYGLKQSGKEWNCKLDSVLRKLNFVRCDSEPCLYKATKRGHF--VLIAVYVDDLIVGCSELTVLEGVKKQIADYFKVKDKGVLNHILGMEVKCDGDTGVIELSQTQYILNVLKHYGMEKCKSVSVPLEAGIQVNCSADCKKV-----NQKDYQSLVGTLMYLAITTRPDILHSVSKMAQRNSDPHVEHMMHLKHILRYLNGTKDLKLIY 846
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A1Y1M2G6_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1M2G6_PHOPY) HSP 1 Score: 157 bits (398), Expect = 7.640e-39 Identity = 88/274 (32.12%), Postives = 151/274 (55.11%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDKLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTE--YRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
P T+R + +++V +++E+ +DV+ AYLNA ++EE +++P F + +V L+KSLYGL QS + WN +++FL +G+ R +PCLY++ E L+V +YVDD+V+ G ++++ KN +S+ F++KDLG S VL I ++R +G+ I Q + +LK +G +C+ T +E K K N + Y +V S +Y +T TRPDIA+A ++ +P ++ + I YL D+ I +
Sbjct: 930 PVIMRKTMRILLAISVRKNWEINHIDVNCAYLNARLDEETYMEIPDGFDENLNKKKYVCELKKSLYGLHQSGYLWNQEINEFLKKMGMQRSRMDPCLYYNT----ERTLIVTLYVDDMVLHGLKTEIEKLKNALSKNFKIKDLGEASRVLSINIKRF--NGSLKIDQRDYILNILKNFGMTDCKPAATPLELGAKYM------KNMAEINNQVKGMYEKIVGSLLYLATNTRPDIAFATSYMSQFTINPSQQHLQGLKRILRYLKGTLDVGIVY 1191
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR) HSP 1 Score: 154 bits (390), Expect = 9.790e-39 Identity = 91/264 (34.47%), Postives = 143/264 (54.17%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDKLD-EFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLS 1052
P + T+R + SLA + + +DV AAYLN+P+EEEL VK PP F ++ V LRKSLYGL+QS WN D L +G ++ + CL+ ++ G ++ +YVDDL++ G K+ E + + F+ KDLG + + LGI + R DG+ + Q + ++L+ YG EC+ T +E S ++ S P ++T+YR + S +Y +T +RPDIA V RH+E P D+ + + YL+
Sbjct: 114 PVVKHDTVRVLLSLAAAQKLHVRHLDVKAAYLNSPLEEELYVKQPPGFEVQGQEHK-VLLLRKSLYGLKQSARAWNKMATDTLTSLGFEQAMADHCLFSKKEKNGSRTYIL-IYVDDLLVVGATPKITKEVGIQMDKFFQTKDLGEVKNYLGIQIERE-GDGSILLHQRNKIEQLLEQYGLMECKPAPTPMETGFL-----SVNQESPPMPDNTKYRQAIGSLLYVATVSRPDIAAPVGFLCRHVEKPTEADWKAVKRVMRYLA 369
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A7D9M8W6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M8W6_PARCT) HSP 1 Score: 154 bits (388), Expect = 1.780e-38 Identity = 93/274 (33.94%), Postives = 151/274 (55.11%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQF-SHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGD-KLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
P A+++++R + LA++ D E+ MDV AYLNAPV+ EL ++ P F HS V L KSLYGL+QS NWN L FL G + ++PC+Y + +G T LL+ +VDD++IA L + K+++S +F++KDLG LS LGI T T+ Q + +L + + C+ +T E + ++ G++D+P++ Y+ +V S +Y T TRPD+++ V + ++HM +P + + YL D +TF
Sbjct: 132 PTAKITSIRMLMQLALDLDMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEMLVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGFTQLVSDPCVYIKKQNGKTTILLI--WVDDIIIASNSTPSLKQVKDDLSCKFKMKDLGILSWFLGI--NFTFTGNTITMDQIRYIERILIRFKMEGCKPRVTPSELGVNKASAGNSDEPADLK----LYQEIVGSLIYVMTSTRPDLSFIVTKLSQHMSNPSNVHLCMAKHVLRYLKGTIDNKLTF 397
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A6S7IT23_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IT23_PARCT) HSP 1 Score: 155 bits (392), Expect = 2.330e-38 Identity = 93/274 (33.94%), Postives = 153/274 (55.84%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQF-SHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGD-KLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
P A+++++R + LA++ D E+ MDV AYLNAPV+ EL ++ P F HS V L KSLYGL+QS NWN L FL G+ + ++PC+Y + +G +T LL+ +VDD++IA L + K+++S +F++KDLG LS LGI T T+ Q + +L + + C+ +T E + ++ G++D+P++ Y+ +V S +Y T TRPD+++ V + ++HM +P + + YL D +TF
Sbjct: 299 PRAKITSIRMLMQLALDLDMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEMLVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIIIASNSTPSLKQVKDDLSCKFKMKDLGILSWFLGI--NFTFTGNTITMDQIRYIERILIRFKMEGCKPRVTPSELGVNKASAGNSDEPADLK----LYQEIVGSLIYVMTSTRPDLSFIVTKLSQHMSNPSNVHLCMAKHVLRYLKGTIDNKLTF 564
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A6G0X2D0_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2D0_9STRA) HSP 1 Score: 151 bits (382), Expect = 2.400e-38 Identity = 95/279 (34.05%), Postives = 155/279 (55.56%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQF---SHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDKLDEF-KNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLT---SVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
P A+ +++R + S A + + +L+ MDV+ A+LN+ ++E++ +++P + + V L+KSL GL+Q+ WN T+D F++ I + + N + C+Y R G +LV++YVDDL++A +K+ + K +S+RF++ DLG+LS+ LGI V R P G+ I Q VL + C+ V T S +R K P +TD+ G +YR V MY TRPDIA AV A++ +E+P + +S + IF YL D I +
Sbjct: 17 PVAKFTSIRVLLSTAAKYNLDLQQMDVNTAFLNSDLDEDIYMQVPDDLDVKATQGQTSKLVLKLKKSLCGLKQAPRLWNETIDGFMLSIRIAKSNADHCIYVMRT--GSRVVLVSLYVDDLILASNCNKMMQATKEALSKRFKMTDLGALSYCLGIEVMRS-PSGSVFIHQSKFLKSVLVKFNMQGCKPVKTPQESGQRLSKYMCP-TTDEEKTDMGR-IQYRSAVGCLMYLMVTTRPDIAVAVGVASQFLENPGQRHWSAVKRIFRYLKGTEDFGIKY 290
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A6A2Z247_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Z247_HIBSY) HSP 1 Score: 154 bits (389), Expect = 1.200e-37 Identity = 87/275 (31.64%), Postives = 149/275 (54.18%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRG-DKLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNS-TEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITFG 1082
P R++T+R V + + LE +DV A+L+ +EEE+ + P F + R L KSLYGL+Q+ W D F++ +G +R N +PC YF R + +L+ +YVDD+++AG D ++E K +++ F +KDLGS + +LG+ + R + +SQ ++ ++L + +C+ + T + K+S+ S E S Y VES M+A TRPDIA AV +R+M +P +E ++T + I Y+ ++ + +G
Sbjct: 837 PVVRLTTVRVVLVMCATLNLHLEQLDVKTAFLHGNLEEEIYMLQPEGFEEKEKKNLVCR-LNKSLYGLKQAPRCWYKRFDSFIICLGYNRLNADPCAYFKRSCDNDFVILL-LYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILGMQIHRDINNRNIWLSQKNYLKKILSRFSMQDCKPISTPLPINFKLSSSMSPSSEEERMEMSRVPYASAVESLMFAMIYTRPDIAQAVGVVSRYMANPGKEHWNTVKRILRYIKGTSNVALCYG 1109
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A6A2XQI6_HIBSY (Cytochrome P450 71A9-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XQI6_HIBSY) HSP 1 Score: 154 bits (388), Expect = 1.570e-37 Identity = 87/275 (31.64%), Postives = 149/275 (54.18%), Query Frame = 3
Query: 264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRG-DKLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNS-TEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITFG 1082
P R++T+R V ++ D LE +DV A+L+ +EEE+ + P F + R L KSLYGL+Q+ W D F++ +G +R N +PC YF R D + +L+ +YVDD+++AG D ++E K +++ F +KDLGS + +LG+ + R + +SQ ++ ++L + +C+ + T + K+S+ S E S Y V S M+A TRPDIA V +R+M +P +E ++T + I Y+ ++ + +G
Sbjct: 783 PVVRLTTVRVVLAMCATLDLHLEQLDVKIAFLHGNLEEEIYMLQPEGFEEKEKKNLVCR-LNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRSDDNDFVILL-LYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILGMQIHRDRSNRKIWLSQKNYLKKILSRFSMQDCKPISTPLPFNFKLSSSMSPSSEEERMEMSRVPYASAVGSLMFAMICTRPDIAQVVGVVSRYMANPGKEHWNTVKRILRYIKGTSNVALCYG 1055 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12816.1771.1 >prot_H-paniculata_contig12816.1771.1 ID=prot_H-paniculata_contig12816.1771.1|Name=mRNA_H-paniculata_contig12816.1771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp MSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDback to top mRNA from alignment at H-paniculata_contig12816:585..1729+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12816.1771.1 ID=mRNA_H-paniculata_contig12816.1771.1|Name=mRNA_H-paniculata_contig12816.1771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-paniculata_contig12816:585..1729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12816:585..1729+ >mRNA_H-paniculata_contig12816.1771.1 ID=mRNA_H-paniculata_contig12816.1771.1|Name=mRNA_H-paniculata_contig12816.1771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig12816:585..1729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |