mRNA_H-paniculata_contig12816.1771.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12816.1771.1
Unique NamemRNA_H-paniculata_contig12816.1771.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A409WVI7_9AGAR (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Panaeolus cyanescens TaxID=181874 RepID=A0A409WVI7_9AGAR)

HSP 1 Score: 165 bits (418), Expect = 1.780e-41
Identity = 103/279 (36.92%), Postives = 151/279 (54.12%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRC--LRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDK-LDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISA--PGSTDKPSEP--HGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
            P A + ++R + +LA + D EL+ MDV  AYLN  + E+L + LPP       DIP   C  L+KSLYGL+Q+   WN T D  L  +G  R +   CLY  R +GG+   LV VYVDDL++A      +DE K  ++  F+++DLG  S+VLGI +RR        +SQ  +   VLK  G ++C+ V T +  + +++A  P + D  +E   +  +  Y  +V S MYA   TRPDIAYA     R   +P R  +   + +  YL    DL++ F
Sbjct: 1089 PVANLESIRIILALAAKHDLELDQMDVQTAYLNGKLTEDLYL-LPPD----GVDIPKGHCWKLKKSLYGLKQAGRTWNKTFDSSLKDLGFTRLDAETCLYVMRGEGGKLCFLV-VYVDDLILAATSRAYMDEIKTKLAATFKMRDLGPASYVLGIQIRRDRRKRIIGLSQRQYIDTVLKRCGMEDCKPVFTPLSTQNRLTADDPINNDTLTEMTINNKTVSYATVVGSLMYAMMGTRPDIAYATGLLGRFSTNPKRCHWEAAKRVLRYLKGTRDLELQF 1361          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A284QR55_ARMOS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Armillaria ostoyae TaxID=47428 RepID=A0A284QR55_ARMOS)

HSP 1 Score: 157 bits (397), Expect = 4.380e-40
Identity = 84/280 (30.00%), Postives = 152/280 (54.29%), Query Frame = 3
Query:  246 FL*NQCPGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDK-LDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITFG 1082
            F     P  R+ T R + ++AV+R+  + GMDV  AYLN  ++E + +  PP++S  S     ++ +   LYGL+QS   WN  L+   +G+G  R  ++ C+Y  + D G   ++VAV+VDD+ +    D+ +   K  + ++  V D+G + ++LG+ + R    GT T+SQ ++  +VL+  G ++C+ V   ++  +++    + D           Y   V S MYA+  +RPDIA+AV + ++++++P  E  +  + +F YL    D  IT+G
Sbjct:   62 FFETYAPVVRLDTFRLLMAIAVQRNLIIHGMDVVGAYLNGKLDESIYMAQPPEYSDGSGKAAHLKLM---LYGLKQSGRVWNEKLNATFLGLGYTRLMSDQCVYIRQMDSGP--IIVAVHVDDMTLLAPDDETMSNMKEELKKKLNVMDMGEIQYILGMKIDRNWDKGTITLSQKAYILKVLERMGMNDCKPVKMPMDPNVRLEKIPAGDSRGVNTATRQYYHTGVGSLMYAANGSRPDIAHAVTELSKYVQNPAAEHVTALKRVFRYLKGTLDSGITYG 336          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A4C1SXU4_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SXU4_EUMVA)

HSP 1 Score: 160 bits (405), Expect = 7.010e-40
Identity = 95/273 (34.80%), Postives = 146/273 (53.48%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIA-GRGDKLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
            P  R STLR + +LAV+    L  MDVD AYLN+ + +E+ +K PP F   +     +R L K++YGL+QS   WN  LD  L  +   R ++ PCLY +   G    +L+AVYVDDL++       L+  K  I+  F+VKD G L+H+LG+ V+     G   +SQ  +   VLK YG ++C+ V   +E  ++++      K      N  +Y+ +V + MY +  TRPDI ++V + A+   DP  E     + I  YL+   DL + +
Sbjct:  582 PVVRYSTLRLLLALAVKNKMHLHQMDVDTAYLNSDLHDEIYLKQPPHFVDETSPRKVLR-LHKAIYGLKQSGKEWNCKLDSVLRKLNFVRCDSEPCLYKATKRGHF--VLIAVYVDDLIVGCSELTVLEGVKKQIADYFKVKDKGVLNHILGMEVKCDGDTGVIELSQTQYILNVLKHYGMEKCKSVSVPLEAGIQVNCSADCKKV-----NQKDYQSLVGTLMYLAITTRPDILHSVSKMAQRNSDPHVEHMMHLKHILRYLNGTKDLKLIY 846          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A1Y1M2G6_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1M2G6_PHOPY)

HSP 1 Score: 157 bits (398), Expect = 7.640e-39
Identity = 88/274 (32.12%), Postives = 151/274 (55.11%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDKLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTE--YRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
            P     T+R + +++V +++E+  +DV+ AYLNA ++EE  +++P  F  +     +V  L+KSLYGL QS + WN  +++FL  +G+ R   +PCLY++     E  L+V +YVDD+V+ G   ++++ KN +S+ F++KDLG  S VL I ++R   +G+  I Q  +   +LK +G  +C+   T +E   K        K      N  +  Y  +V S +Y +T TRPDIA+A    ++   +P ++     + I  YL    D+ I +
Sbjct:  930 PVIMRKTMRILLAISVRKNWEINHIDVNCAYLNARLDEETYMEIPDGFDENLNKKKYVCELKKSLYGLHQSGYLWNQEINEFLKKMGMQRSRMDPCLYYNT----ERTLIVTLYVDDMVLHGLKTEIEKLKNALSKNFKIKDLGEASRVLSINIKRF--NGSLKIDQRDYILNILKNFGMTDCKPAATPLELGAKYM------KNMAEINNQVKGMYEKIVGSLLYLATNTRPDIAFATSYMSQFTINPSQQHLQGLKRILRYLKGTLDVGIVY 1191          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A5S6Q3I8_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6Q3I8_TRIMR)

HSP 1 Score: 154 bits (390), Expect = 9.790e-39
Identity = 91/264 (34.47%), Postives = 143/264 (54.17%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDKLD-EFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLS 1052
            P  +  T+R + SLA  +   +  +DV AAYLN+P+EEEL VK PP F    ++   V  LRKSLYGL+QS   WN    D L  +G ++   + CL+  ++  G    ++ +YVDDL++ G   K+  E    + + F+ KDLG + + LGI + R   DG+  + Q +   ++L+ YG  EC+   T +E         S ++ S P  ++T+YR  + S +Y +T +RPDIA  V    RH+E P   D+   + +  YL+
Sbjct:  114 PVVKHDTVRVLLSLAAAQKLHVRHLDVKAAYLNSPLEEELYVKQPPGFEVQGQEHK-VLLLRKSLYGLKQSARAWNKMATDTLTSLGFEQAMADHCLFSKKEKNGSRTYIL-IYVDDLLVVGATPKITKEVGIQMDKFFQTKDLGEVKNYLGIQIERE-GDGSILLHQRNKIEQLLEQYGLMECKPAPTPMETGFL-----SVNQESPPMPDNTKYRQAIGSLLYVATVSRPDIAAPVGFLCRHVEKPTEADWKAVKRVMRYLA 369          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A7D9M8W6_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M8W6_PARCT)

HSP 1 Score: 154 bits (388), Expect = 1.780e-38
Identity = 93/274 (33.94%), Postives = 151/274 (55.11%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQF-SHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGD-KLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
            P A+++++R +  LA++ D E+  MDV  AYLNAPV+ EL ++ P  F  HS      V  L KSLYGL+QS  NWN  L  FL   G  +  ++PC+Y  + +G  T LL+  +VDD++IA      L + K+++S +F++KDLG LS  LGI         T T+ Q  +   +L  +  + C+  +T  E  +  ++ G++D+P++       Y+ +V S +Y  T TRPD+++ V + ++HM +P        + +  YL    D  +TF
Sbjct:  132 PTAKITSIRMLMQLALDLDMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEMLVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGFTQLVSDPCVYIKKQNGKTTILLI--WVDDIIIASNSTPSLKQVKDDLSCKFKMKDLGILSWFLGI--NFTFTGNTITMDQIRYIERILIRFKMEGCKPRVTPSELGVNKASAGNSDEPADLK----LYQEIVGSLIYVMTSTRPDLSFIVTKLSQHMSNPSNVHLCMAKHVLRYLKGTIDNKLTF 397          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A6S7IT23_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IT23_PARCT)

HSP 1 Score: 155 bits (392), Expect = 2.330e-38
Identity = 93/274 (33.94%), Postives = 153/274 (55.84%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQF-SHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGD-KLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
            P A+++++R +  LA++ D E+  MDV  AYLNAPV+ EL ++ P  F  HS      V  L KSLYGL+QS  NWN  L  FL   G+ +  ++PC+Y  + +G +T LL+  +VDD++IA      L + K+++S +F++KDLG LS  LGI         T T+ Q  +   +L  +  + C+  +T  E  +  ++ G++D+P++       Y+ +V S +Y  T TRPD+++ V + ++HM +P        + +  YL    D  +TF
Sbjct:  299 PRAKITSIRMLMQLALDLDMEVHQMDVKTAYLNAPVDCELYIEQPEGFVKHSESGEMLVCKLNKSLYGLKQSGRNWNHMLHTFLTSKGITQLVSDPCVYIKKQNGKKTILLI--WVDDIIIASNSTPSLKQVKDDLSCKFKMKDLGILSWFLGI--NFTFTGNTITMDQIRYIERILIRFKMEGCKPRVTPSELGVNKASAGNSDEPADLK----LYQEIVGSLIYVMTSTRPDLSFIVTKLSQHMSNPSNVHLCMAKHVLRYLKGTIDNKLTF 564          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A6G0X2D0_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X2D0_9STRA)

HSP 1 Score: 151 bits (382), Expect = 2.400e-38
Identity = 95/279 (34.05%), Postives = 155/279 (55.56%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQF---SHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRGDKLDEF-KNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLT---SVERKMKISAPGSTDKPSEPHGNSTEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITF 1079
            P A+ +++R + S A + + +L+ MDV+ A+LN+ ++E++ +++P      +   +    V  L+KSL GL+Q+   WN T+D F++ I + + N + C+Y  R   G   +LV++YVDDL++A   +K+ +  K  +S+RF++ DLG+LS+ LGI V R  P G+  I Q      VL  +    C+ V T   S +R  K   P +TD+     G   +YR  V   MY    TRPDIA AV  A++ +E+P +  +S  + IF YL    D  I +
Sbjct:   17 PVAKFTSIRVLLSTAAKYNLDLQQMDVNTAFLNSDLDEDIYMQVPDDLDVKATQGQTSKLVLKLKKSLCGLKQAPRLWNETIDGFMLSIRIAKSNADHCIYVMRT--GSRVVLVSLYVDDLILASNCNKMMQATKEALSKRFKMTDLGALSYCLGIEVMRS-PSGSVFIHQSKFLKSVLVKFNMQGCKPVKTPQESGQRLSKYMCP-TTDEEKTDMGR-IQYRSAVGCLMYLMVTTRPDIAVAVGVASQFLENPGQRHWSAVKRIFRYLKGTEDFGIKY 290          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A6A2Z247_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2Z247_HIBSY)

HSP 1 Score: 154 bits (389), Expect = 1.200e-37
Identity = 87/275 (31.64%), Postives = 149/275 (54.18%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRG-DKLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNS-TEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITFG 1082
            P  R++T+R V  +    +  LE +DV  A+L+  +EEE+ +  P  F    +     R L KSLYGL+Q+   W    D F++ +G +R N +PC YF R    +  +L+ +YVDD+++AG   D ++E K  +++ F +KDLGS + +LG+ + R   +    +SQ ++  ++L  +   +C+ + T +    K+S+  S     E    S   Y   VES M+A   TRPDIA AV   +R+M +P +E ++T + I  Y+    ++ + +G
Sbjct:  837 PVVRLTTVRVVLVMCATLNLHLEQLDVKTAFLHGNLEEEIYMLQPEGFEEKEKKNLVCR-LNKSLYGLKQAPRCWYKRFDSFIICLGYNRLNADPCAYFKRSCDNDFVILL-LYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILGMQIHRDINNRNIWLSQKNYLKKILSRFSMQDCKPISTPLPINFKLSSSMSPSSEEERMEMSRVPYASAVESLMFAMIYTRPDIAQAVGVVSRYMANPGKEHWNTVKRILRYIKGTSNVALCYG 1109          
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Match: A0A6A2XQI6_HIBSY (Cytochrome P450 71A9-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2XQI6_HIBSY)

HSP 1 Score: 154 bits (388), Expect = 1.570e-37
Identity = 87/275 (31.64%), Postives = 149/275 (54.18%), Query Frame = 3
Query:  264 PGARMSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRDIPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDGGETDLLVAVYVDDLVIAGRG-DKLDEFKNNISQRFRVKDLGSLSHVLGI*VRRGCPDGTTTISQGSHTHEVLKIYGFDECRGVLTSVERKMKISAPGSTDKPSEPHGNS-TEYRGMVESFMYASTETRPDIAYAVHQAARHMEDPCREDFSTCQGIFCYLSTMPDLDITFG 1082
            P  R++T+R V ++    D  LE +DV  A+L+  +EEE+ +  P  F    +     R L KSLYGL+Q+   W    D F++ +G +R N +PC YF R D  +  +L+ +YVDD+++AG   D ++E K  +++ F +KDLGS + +LG+ + R   +    +SQ ++  ++L  +   +C+ + T +    K+S+  S     E    S   Y   V S M+A   TRPDIA  V   +R+M +P +E ++T + I  Y+    ++ + +G
Sbjct:  783 PVVRLTTVRVVLAMCATLDLHLEQLDVKIAFLHGNLEEEIYMLQPEGFEEKEKKNLVCR-LNKSLYGLKQAPRCWYKRFDSFIMCLGYNRLNADPCAYFKRSDDNDFVILL-LYVDDMLVAGPNKDHIEELKAQLAREFEMKDLGSANKILGMQIHRDRSNRKIWLSQKNYLKKILSRFSMQDCKPISTPLPFNFKLSSSMSPSSEEERMEMSRVPYASAVGSLMFAMICTRPDIAQVVGVVSRYMANPGKEHWNTVKRILRYIKGTSNVALCYG 1055          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12816.1771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A409WVI7_9AGAR1.780e-4136.92Integrase catalytic domain-containing protein (Fra... [more]
A0A284QR55_ARMOS4.380e-4030.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4C1SXU4_EUMVA7.010e-4034.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A1Y1M2G6_PHOPY7.640e-3932.12Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]
A0A5S6Q3I8_TRIMR9.790e-3934.47Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M8W6_PARCT1.780e-3833.94Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6S7IT23_PARCT2.330e-3833.94Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A6G0X2D0_9STRA2.400e-3834.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A2Z247_HIBSY1.200e-3731.64Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A2XQI6_HIBSY1.570e-3731.64Cytochrome P450 71A9-like n=1 Tax=Hibiscus syriacu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12816contigH-paniculata_contig12816:585..1729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score106.3
Seed ortholog evalue1.3e-20
Seed eggNOG ortholog15368.BRADI2G31610.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs37THH@33090,3GG2K@35493,3IIIB@38820,3M5VU@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1082
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12816.1771.1prot_H-paniculata_contig12816.1771.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12816 860..1306 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.4710703-UTR-H-paniculata_contig12816:584..8591622929002.4710703-UTR-H-paniculata_contig12816:584..859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12816 585..859 +
1691480697.5415456-UTR-H-paniculata_contig12816:584..8591691480697.5415456-UTR-H-paniculata_contig12816:584..859Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12816 585..859 +
1622929002.4997616-UTR-H-paniculata_contig12816:1306..14731622929002.4997616-UTR-H-paniculata_contig12816:1306..1473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12816 1307..1473 +
1691480697.563731-UTR-H-paniculata_contig12816:1306..14731691480697.563731-UTR-H-paniculata_contig12816:1306..1473Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12816 1307..1473 +
1622929002.51569-UTR-H-paniculata_contig12816:1536..17291622929002.51569-UTR-H-paniculata_contig12816:1536..1729Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12816 1537..1729 +
1691480697.573647-UTR-H-paniculata_contig12816:1536..17291691480697.573647-UTR-H-paniculata_contig12816:1536..1729Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12816 1537..1729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.4857392-CDS-H-paniculata_contig12816:859..13061622929002.4857392-CDS-H-paniculata_contig12816:859..1306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12816 860..1306 +
1691480697.5547886-CDS-H-paniculata_contig12816:859..13061691480697.5547886-CDS-H-paniculata_contig12816:859..1306Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12816 860..1306 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12816.1771.1

>prot_H-paniculata_contig12816.1771.1 ID=prot_H-paniculata_contig12816.1771.1|Name=mRNA_H-paniculata_contig12816.1771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MSTLRTVFSLAVERDFELEGMDVDAAYLNAPVEEELLVKLPPQFSHSSRD
IPFVRCLRKSLYGLRQSRWNWNSTLDDFLVGIGLDRPNTNPCLYFSRDDG
GETDLLVAVYVDDLVIAGRGDKLDEFKNNISQRFRVKDLGSLSHVLGI*
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mRNA from alignment at H-paniculata_contig12816:585..1729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12816.1771.1 ID=mRNA_H-paniculata_contig12816.1771.1|Name=mRNA_H-paniculata_contig12816.1771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1145bp|location=Sequence derived from alignment at H-paniculata_contig12816:585..1729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGAAATCCGCGGAAGAAGCATTAAATGGCCCAGGGGAGGGAAAATGGCG CTCGGCAATCAATCAAGAACGCGGGGCGTTGGTGGAAAATGAAACATGGG AAAGCAAAGACCCGGGGAGGTTACCGGCACGGCGGAAGGCGCTTCGTACG AAATGGATTTTCAAGCGAAAACTGAAGGAGGACGGCAGCGTGGCACGCTA CAAAGCGCGACTGGTGGCTCAAGGCTTCACAGTTGAAGGTGAAGATTTCT TTGAAATCAGTGCCCCGGAGCTCGAATGTCGACGTTACGTACTGTTTTTA GCCTGGCCGTCGAACGTGATTTCGAATTAGAAGGCATGGACGTAGATGCG GCATATTTGAACGCCCCGGTAGAAGAAGAACTGTTAGTTAAGCTACCCCC CCAGTTTTCACATTCGTCCCGAGACATACCGTTTGTGCGCTGCCTGCGTA AAAGTCTGTATGGCCTGAGGCAGAGCCGCTGGAACTGGAATAGCACCCTT GACGATTTTCTTGTCGGGATAGGACTCGATCGTCCCAATACCAACCCGTG CTTGTACTTTTCTCGCGACGATGGGGGAGAGACAGACCTTCTGGTGGCCG TCTATGTTGACGACCTGGTCATTGCTGGTCGTGGTGATAAACTAGACGAG TTTAAGAATAACATAAGTCAGCGTTTTAGGGTGAAAGACTTGGGCTCTCT CTCGCACGTGTTGGGAATATAAGTACGACGTGGCTGCCCTGATGGTACCA CAACCATTTCTCAGGGTAGCCACACCCACGAGGTACTAAAAATATACGGT TTTGACGAGTGTCGAGGGGTACTCACCTCTGTAGAGAGAAAAATGAAGAT TTCGGCACCCGGGTCGACCGACAAGCCCTCCGAACCGCAGTCATTTGGGG CTGTACTGTCGGACATAGGCGCAGCAGTACAAAAAAGCGGCAGAGGGATA AGTGGTAATTCAACTGAATATAGAGGCATGGTAGAATCATTCATGTACGC CTCGACAGAAACTAGACCTGATATAGCATACGCGGTACACCAAGCAGCAC GTCATATGGAGGACCCATGTCGGGAAGACTTCAGTACATGCCAGGGCATT TTTTGTTATCTCAGTACTATGCCTGATCTCGACATTACGTTCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig12816:585..1729+

>mRNA_H-paniculata_contig12816.1771.1 ID=mRNA_H-paniculata_contig12816.1771.1|Name=mRNA_H-paniculata_contig12816.1771.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig12816:585..1729+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGACGTTACGTACTGTTTTTAGCCTGGCCGTCGAACGTGATTTCGA
ATTAGAAGGCATGGACGTAGATGCGGCATATTTGAACGCCCCGGTAGAAG
AAGAACTGTTAGTTAAGCTACCCCCCCAGTTTTCACATTCGTCCCGAGAC
ATACCGTTTGTGCGCTGCCTGCGTAAAAGTCTGTATGGCCTGAGGCAGAG
CCGCTGGAACTGGAATAGCACCCTTGACGATTTTCTTGTCGGGATAGGAC
TCGATCGTCCCAATACCAACCCGTGCTTGTACTTTTCTCGCGACGATGGG
GGAGAGACAGACCTTCTGGTGGCCGTCTATGTTGACGACCTGGTCATTGC
TGGTCGTGGTGATAAACTAGACGAGTTTAAGAATAACATAAGTCAGCGTT
TTAGGGTGAAAGACTTGGGCTCTCTCTCGCACGTGTTGGGAATATAAATG
TCGACGTTACGTACTGTTTTTAGCCTGGCCGTCGAACGTGATTTCGAATT
AGAAGGCATGGACGTAGATGCGGCATATTTGAACGCCCCGGTAGAAGAAG
AACTGTTAGTTAAGCTACCCCCCCAGTTTTCACATTCGTCCCGAGACATA
CCGTTTGTGCGCTGCCTGCGTAAAAGTCTGTATGGCCTGAGGCAGAGCCG
CTGGAACTGGAATAGCACCCTTGACGATTTTCTTGTCGGGATAGGACTCG
ATCGTCCCAATACCAACCCGTGCTTGTACTTTTCTCGCGACGATGGGGGA
GAGACAGACCTTCTGGTGGCCGTCTATGTTGACGACCTGGTCATTGCTGG
TCGTGGTGATAAACTAGACGAGTTTAAGAATAACATAAGTCAGCGTTTTA
GGGTGAAAGACTTGGGCTCTCTCTCGCACGTGTTGGGAATATAA
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