mRNA_H-paniculata_contig1281.1769.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1281.1769.1
Unique NamemRNA_H-paniculata_contig1281.1769.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1281.1769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1281contigH-paniculata_contig1281:9451..10479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1030
Cds size1029
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.3824332-CDS-H-paniculata_contig1281:9450..104791622929002.3824332-CDS-H-paniculata_contig1281:9450..10479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1281 9451..10479 +
1691480697.5183105-CDS-H-paniculata_contig1281:9450..104791691480697.5183105-CDS-H-paniculata_contig1281:9450..10479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1281 9451..10479 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1281.1769.1prot_H-paniculata_contig1281.1769.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1281 9451..10479 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1281.1769.1

>prot_H-paniculata_contig1281.1769.1 ID=prot_H-paniculata_contig1281.1769.1|Name=mRNA_H-paniculata_contig1281.1769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=343bp
MGDVAESFVVAPATTAAELAAPDKAQPTVVDGNTAIESVKMTCDAKETVP
AGAKLVSAAVDFSTSASLFEHGGSFSAVAQEPSAAVLPSLDHTDFVVTSH
SADRPCLSLSGNRSEHKQGECVDKLGVPLLSPGGSDLSPCSGNTSAPQPA
GVAYATHDNKPSGTSKGSGKFLSAGSAVERETSDWLNLDPVAPTSFGARD
EIWGIMWRGVLSGRSKLLGNFETSGTAATLADASGERQEIASGQARLPSS
PPAPAPGFQTNPRSLQASADNSRRKEGGYRSSDEDAHVADHGVPGHMAAL
TTTSNVSIYRNNGTESSHATRIVGATTAGIPVFSGQQVFQPEC
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mRNA from alignment at H-paniculata_contig1281:9451..10479+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1281.1769.1 ID=mRNA_H-paniculata_contig1281.1769.1|Name=mRNA_H-paniculata_contig1281.1769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1029bp|location=Sequence derived from alignment at H-paniculata_contig1281:9451..10479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGACGTAGCAGAGAGTTTCGTGGTAGCCCCGGCTACAACAGCAGC
AGAATTAGCAGCGCCAGACAAGGCACAGCCAACTGTGGTCGATGGAAACA
CCGCTATTGAGTCGGTGAAGATGACCTGCGATGCTAAAGAGACCGTTCCG
GCGGGCGCGAAATTGGTCTCGGCCGCTGTTGATTTCTCCACCAGCGCAAG
CCTTTTTGAACACGGTGGGTCGTTTTCGGCGGTGGCACAAGAACCTAGTG
CTGCTGTTCTACCATCGCTAGATCACACGGATTTCGTTGTGACTTCGCAT
TCCGCCGACAGACCGTGCCTCTCTTTGAGCGGGAACCGGTCCGAGCACAA
GCAGGGTGAATGTGTAGACAAGTTAGGCGTACCATTGCTATCCCCTGGAG
GATCGGATCTTTCTCCCTGTAGTGGGAACACGTCAGCGCCACAGCCTGCC
GGTGTTGCGTACGCAACCCACGACAACAAACCGTCGGGGACTAGCAAAGG
CAGCGGTAAGTTCTTGTCTGCCGGGAGCGCAGTAGAGCGCGAAACGTCAG
ACTGGCTAAACTTGGATCCCGTCGCGCCGACTTCTTTCGGCGCGAGGGAT
GAAATATGGGGCATCATGTGGCGGGGTGTGCTATCAGGCCGATCCAAACT
GTTGGGTAACTTTGAAACATCGGGCACTGCTGCGACACTTGCTGATGCGA
GTGGTGAGCGGCAAGAAATAGCGTCGGGGCAAGCGCGACTTCCATCATCG
CCACCCGCACCCGCACCAGGCTTCCAAACAAATCCTCGTAGCCTCCAAGC
GAGCGCCGACAACTCTAGAAGGAAGGAGGGCGGATACAGATCCAGTGACG
AGGATGCCCATGTAGCAGACCACGGAGTTCCGGGGCACATGGCAGCCTTA
ACAACGACTAGCAATGTTAGTATCTACCGCAACAACGGAACGGAAAGTTC
GCATGCCACCCGCATTGTCGGCGCCACTACCGCTGGCATTCCTGTGTTTT
CCGGGCAACAGGTGTTTCAGCCAGAGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1281:9451..10479+

>mRNA_H-paniculata_contig1281.1769.1 ID=mRNA_H-paniculata_contig1281.1769.1|Name=mRNA_H-paniculata_contig1281.1769.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2058bp|location=Sequence derived from alignment at H-paniculata_contig1281:9451..10479+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGGACGTAGCAGAGAGTTTCGTGGTAGCCCCGGCTACAACAGCAGC
AGAATTAGCAGCGCCAGACAAGGCACAGCCAACTGTGGTCGATGGAAACA
CCGCTATTGAGTCGGTGAAGATGACCTGCGATGCTAAAGAGACCGTTCCG
GCGGGCGCGAAATTGGTCTCGGCCGCTGTTGATTTCTCCACCAGCGCAAG
CCTTTTTGAACACGGTGGGTCGTTTTCGGCGGTGGCACAAGAACCTAGTG
CTGCTGTTCTACCATCGCTAGATCACACGGATTTCGTTGTGACTTCGCAT
TCCGCCGACAGACCGTGCCTCTCTTTGAGCGGGAACCGGTCCGAGCACAA
GCAGGGTGAATGTGTAGACAAGTTAGGCGTACCATTGCTATCCCCTGGAG
GATCGGATCTTTCTCCCTGTAGTGGGAACACGTCAGCGCCACAGCCTGCC
GGTGTTGCGTACGCAACCCACGACAACAAACCGTCGGGGACTAGCAAAGG
CAGCGGTAAGTTCTTGTCTGCCGGGAGCGCAGTAGAGCGCGAAACGTCAG
ACTGGCTAAACTTGGATCCCGTCGCGCCGACTTCTTTCGGCGCGAGGGAT
GAAATATGGGGCATCATGTGGCGGGGTGTGCTATCAGGCCGATCCAAACT
GTTGGGTAACTTTGAAACATCGGGCACTGCTGCGACACTTGCTGATGCGA
GTGGTGAGCGGCAAGAAATAGCGTCGGGGCAAGCGCGACTTCCATCATCG
CCACCCGCACCCGCACCAGGCTTCCAAACAAATCCTCGTAGCCTCCAAGC
GAGCGCCGACAACTCTAGAAGGAAGGAGGGCGGATACAGATCCAGTGACG
AGGATGCCCATGTAGCAGACCACGGAGTTCCGGGGCACATGGCAGCCTTA
ACAACGACTAGCAATGTTAGTATCTACCGCAACAACGGAACGGAAAGTTC
GCATGCCACCCGCATTGTCGGCGCCACTACCGCTGGCATTCCTGTGTTTT
CCGGGCAACAGGTGTTTCAGCCAGAGTGCATGGGGGACGTAGCAGAGAGT
TTCGTGGTAGCCCCGGCTACAACAGCAGCAGAATTAGCAGCGCCAGACAA
GGCACAGCCAACTGTGGTCGATGGAAACACCGCTATTGAGTCGGTGAAGA
TGACCTGCGATGCTAAAGAGACCGTTCCGGCGGGCGCGAAATTGGTCTCG
GCCGCTGTTGATTTCTCCACCAGCGCAAGCCTTTTTGAACACGGTGGGTC
GTTTTCGGCGGTGGCACAAGAACCTAGTGCTGCTGTTCTACCATCGCTAG
ATCACACGGATTTCGTTGTGACTTCGCATTCCGCCGACAGACCGTGCCTC
TCTTTGAGCGGGAACCGGTCCGAGCACAAGCAGGGTGAATGTGTAGACAA
GTTAGGCGTACCATTGCTATCCCCTGGAGGATCGGATCTTTCTCCCTGTA
GTGGGAACACGTCAGCGCCACAGCCTGCCGGTGTTGCGTACGCAACCCAC
GACAACAAACCGTCGGGGACTAGCAAAGGCAGCGGTAAGTTCTTGTCTGC
CGGGAGCGCAGTAGAGCGCGAAACGTCAGACTGGCTAAACTTGGATCCCG
TCGCGCCGACTTCTTTCGGCGCGAGGGATGAAATATGGGGCATCATGTGG
CGGGGTGTGCTATCAGGCCGATCCAAACTGTTGGGTAACTTTGAAACATC
GGGCACTGCTGCGACACTTGCTGATGCGAGTGGTGAGCGGCAAGAAATAG
CGTCGGGGCAAGCGCGACTTCCATCATCGCCACCCGCACCCGCACCAGGC
TTCCAAACAAATCCTCGTAGCCTCCAAGCGAGCGCCGACAACTCTAGAAG
GAAGGAGGGCGGATACAGATCCAGTGACGAGGATGCCCATGTAGCAGACC
ACGGAGTTCCGGGGCACATGGCAGCCTTAACAACGACTAGCAATGTTAGT
ATCTACCGCAACAACGGAACGGAAAGTTCGCATGCCACCCGCATTGTCGG
CGCCACTACCGCTGGCATTCCTGTGTTTTCCGGGCAACAGGTGTTTCAGC
CAGAGTGC
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