mRNA_H-paniculata_contig12809.1766.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12809.1766.1
Unique NamemRNA_H-paniculata_contig12809.1766.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 4.770e-80
Identity = 131/250 (52.40%), Postives = 168/250 (67.20%), Query Frame = 1
Query:    1 VLASLQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVEC-FGILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLHS 747
            VLA LQIL RGN F ++  +S +S  T  S FH FCK FA +L+ E++ LPTG+ L   M+ YD +GF GA GSTDVTHI WG  P +   + TGKE   T+A++ TVDHSG +L +T+G  GA NDK+I+R+DK V  +R   +Y     KL  +DG +  EKG YL+VD GYH+     L+ P+K    R +L +SKRL+S RKDVEC FGILKGRFRI+KL I F +   + NV +TCCILHNMLHS
Sbjct:   84 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRT--LIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHS 331          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE)

HSP 1 Score: 255 bits (651), Expect = 5.720e-79
Identity = 131/250 (52.40%), Postives = 168/250 (67.20%), Query Frame = 1
Query:    1 VLASLQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVEC-FGILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLHS 747
            VLA LQIL RGN F ++  +S +S  T  S FH FCK FA +L+ E++ LPTG+ L   M+ YD +GF GA GSTDVTHI WG  P +   + TGKE   T+A++ TVDHSG +L +T+G  GA NDK+I+R+DK V  +R   +Y     KL  +DG +  EKG YL+VD GYH+     L+ P+K    R +L +SKRL+S RKDVEC FGILKGRFRI+KL I F +   + NV +TCCILHNMLHS
Sbjct:  175 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGEDLRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRT--LIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHS 422          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 242 bits (618), Expect = 3.350e-74
Identity = 125/250 (50.00%), Postives = 163/250 (65.20%), Query Frame = 1
Query:    1 VLASLQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVECF-GILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLHS 747
            VLA LQIL RGN F ++  +S +S  TA + FH F + FA +++ E I LPTGD     M  YD +GF+GA GSTDVTHI WG  P +     TGKE + T+AY+ TVDH+  +L +T G  G+ NDKSI+R+D  V  +RE  +Y      + + DG     KG YL+VD GYH+   V L+ P+K    + +LA+SKRL+SVRKDVECF GI+KGRFRI KL I + +   + NV +TCCILHNMLHS
Sbjct:  159 VLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQKKVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKW--VTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHS 406          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5JV45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV45_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 2.950e-71
Identity = 121/249 (48.59%), Postives = 155/249 (62.25%), Query Frame = 1
Query:    1 VLASLQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVEC-FGILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLH 744
            VL  LQ+LGRGN F +V QLSLMS  TA+  FH FC  F+  L+H+W+ LP G+ L      Y  +G  GA  S D THI+W   P S T+   GKE ++TL YEA+ DHSG IL  TKG  GA NDK++V+ D +V  +RE E + S    L D +G      G +LIVDGGYH+     L+CP KE  +  +  WSKR +S+RKD+EC FG LKGRFR+ K  ILF    ++ N  +T CI+HNMLH
Sbjct:  113 VLGVLQVLGRGNCFADVAQLSLMSRQTAEKSFHRFCDCFSSGLWHQWVTLPEGEVLKKVAGEYGDMGCPGAVASVDCTHISWPACPFSETNTHKGKEGYTTLVYEASCDHSGRILSSTKGFPGAENDKTVVKRDLSVLRMREEEPWASYKFVLFDLEGNTTEHTGGWLIVDGGYHRVPS--LICPFKEYASEAQQEWSKRFESIRKDIECLFGRLKGRFRLFKTGILFGTREKIDNAWFTACIIHNMLH 359          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 3.490e-68
Identity = 115/244 (47.13%), Postives = 153/244 (62.70%), Query Frame = 1
Query:   16 QILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVECFGILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLHS 747
            Q+LG+GN FD+V QLS MS+S AQ  FH FC+ FA ++F E I LPTG  L   M  +  +G+ GA GSTDVTHI W   P +     TGKE F T+AY+ TVDH G  L +T G  GA NDK+I+R+D  V  +R    Y     KLR  +G +++ +G +LIVD GYH+   V L+ P+K  +  E+ A+S+ L+SVRKDV CF       RI KL + + +   V N+ +TCCILHNMLH+
Sbjct:   42 QVLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPTGTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEW--VTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF-------RILKLRMPYHKREYVDNIFFTCCILHNMLHT 276          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 223 bits (567), Expect = 7.170e-68
Identity = 118/246 (47.97%), Postives = 153/246 (62.20%), Query Frame = 1
Query:   13 LQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVECF-GILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLHS 747
            L++LG+GN FD+V QLS MSES AQ+ FH FC+  A ++F E I LPTG  L   M  +  +G  GA GSTDVTHI     P +     TGKE F T+AYE TVDH+G  L +T G AG  NDK+ +R+D  V  +R    Y     KLR  +G E+  +G +LIVD GY+              E+ E+ A+S+ L+SVRKDVECF GILKGRFRI KL + + +   + N+ +TCCILHNMLH+
Sbjct:  137 LKVLGKGNCFDDVEQLSKMSESIAQALFHKFCRHSAAEMFDEHIYLPTGTYLDEVMGIFHQLGCTGACGSTDVTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERTRRGCFLIVDNGYY--------------ESNEDTAFSRHLESVRKDVECFFGILKGRFRILKLRMPYHKREYIDNIFFTCCILHNMLHT 368          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5JHC3_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC3_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 7.490e-67
Identity = 118/246 (47.97%), Postives = 158/246 (64.23%), Query Frame = 1
Query:   13 LQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVECF-GILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLHS 747
            L++LGRGN FD++ QLS +SE T Q  FH F +RFA + F + +K P G  L   ++ Y  VGF G AGS D THI +   P S  H   GKE F+T+A+E   DH    LG++K   GAMNDK+IV FD+ V+ ++     + +   L   DG E  E+G+YLIVDGGYH+       CP +   T++ELA+ K+L+SVRKD+ECF GILKGRFRI K+P+L+R   ++  +  TCC LHNMLHS
Sbjct:  137 LKVLGRGNFFDDIPQLSFISEQTIQRVFHEFTQRFALEFFPKHVKFPQGAHLEEILREYKDVGFGGCAGSMDCTHIHYQSAPNSGRHSYVGKEGFATVAFEVVCDHKLRCLGVSKAFPGAMNDKTIVMFDEYVRRIKTE--CKDVPFTLLGEDGSEFEERGLYLIVDGGYHK-------CPVQFPVTQDELAFRKQLESVRKDIECFFGILKGRFRILKMPLLYRGIHKLDCIFQTCCALHNMLHS 373          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5K8I3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8I3_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 1.470e-65
Identity = 113/248 (45.56%), Postives = 154/248 (62.10%), Query Frame = 1
Query:    1 VLASLQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVEC-FGILKGRFRISKLPILFRESAQVGNVVWTCCILHNML 741
            VLA L+ILGRGN FD+V +++ M E+T    FH F +RFA ++F  W+++P  D L   MK YD VG +GA GS D THI W   P S      GKE ++TL +   V H   +L  T+G  GA NDK+I++FDK   AVR G  Y+ +   L+  DG +  EKG +LIVDGGYH      L  P +    + E  + ++L+SVRKD EC FG++KGRFRI K+  L+R+  ++ N+ +TC ILHNML
Sbjct:  135 VLAVLRILGRGNYFDDVSEVTGMGEATVNHMFHKFTERFACEIFPVWVRMPNEDELKDIMKTYDEVGMSGAMGSMDGTHIEWTLCPYSQRSSHIGKEGYATLVFNVAVSHDMRVLSCTRGFPGAQNDKTIIKFDKFAMAVRNG-WYKDVEYTLKGEDGADIKEKGPWLIVDGGYHNWKQ--LQSPIRAPSNKAESGFKRQLESVRKDSECCFGVVKGRFRICKMQFLYRKKERIDNIFFTCIILHNML 379          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.280e-64
Identity = 115/252 (45.63%), Postives = 154/252 (61.11%), Query Frame = 1
Query:    1 VLASLQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPT--GDALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVECF-GILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLHS 747
            VLA L ILGRGN F  + Q+S MS  T Q+ FH FCK FA +++ E I LP+     L   MK YD +GF+GA GS DVTHI W   P +     TGKE   T+ Y+ TV+H+G  + +T+G   + NDK+ V +D  V+ +R    Y      + + DG     KG YL+VD GYH+     L+ P K   +  ++ +SKRL+SVRKDVECF GILKG FRI K+ + + E  ++ NV +TCCILHNMLH+
Sbjct:   99 VLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWK--ILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHT 348          
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.880e-63
Identity = 116/252 (46.03%), Postives = 157/252 (62.30%), Query Frame = 1
Query:    1 VLASLQILGRGNSFDEVGQLSLMSESTAQSGFHTFCKRFAEDLFHEWIKLPTGD--ALAATMKAYDAVGFNGAAGSTDVTHIAWGCTPASHTHL*TGKERFSTLAYEATVDHSGWILGMTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGVYLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVECF-GILKGRFRISKLPILFRESAQVGNVVWTCCILHNMLHS 747
            VLA L ILGRGN F  +  LS MS  T Q  FH FC+ FA +++ E I LP+ +   L   M  Y+ +GF GA GSTDVTHI W   P +     TGKE   T+ Y+ TV+H+G +L +T+G  G+ NDK+I+  D+ V  +R  + Y      +  +DG  +  KG YLIVD GYH+     L+ P+K   +  +L +SKRL+SVRKDVECF GILK RFRI KL + +++  ++  V +TCCILHNMLH+
Sbjct:  128 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWR--MLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHT 377          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12809.1766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KY50_9PHAE4.770e-8052.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPH7_9PHAE5.720e-7952.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAU4_9PHAE3.350e-7450.00Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV45_9PHAE2.950e-7148.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE3.490e-6847.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE7.170e-6847.97DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JHC3_9PHAE7.490e-6747.97DDE Tnp4 domain-containing protein n=2 Tax=Ectocar... [more]
A0A6H5K8I3_9PHAE1.470e-6545.56Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHI0_9PHAE1.280e-6445.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBE2_9PHAE1.880e-6346.03Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12809contigH-paniculata_contig12809:4166..5495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue2.2e-24
Seed eggNOG ortholog2880.D7FSK2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plant transposon protein
EggNOG OGs2E2RF@1,2S9YA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size747
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12809.1766.1prot_H-paniculata_contig12809.1766.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12809 4166..5147 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.1900797-CDS-H-paniculata_contig12809:4165..43701622929002.1900797-CDS-H-paniculata_contig12809:4165..4370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12809 4166..4370 -
1691480697.4573357-CDS-H-paniculata_contig12809:4165..43701691480697.4573357-CDS-H-paniculata_contig12809:4165..4370Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12809 4166..4370 -
1622929002.2061112-CDS-H-paniculata_contig12809:4866..48791622929002.2061112-CDS-H-paniculata_contig12809:4866..4879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12809 4867..4879 -
1691480697.4684367-CDS-H-paniculata_contig12809:4866..48791691480697.4684367-CDS-H-paniculata_contig12809:4866..4879Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12809 4867..4879 -
1622929002.2189867-CDS-H-paniculata_contig12809:4966..51471622929002.2189867-CDS-H-paniculata_contig12809:4966..5147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12809 4967..5147 -
1691480697.4768434-CDS-H-paniculata_contig12809:4966..51471691480697.4768434-CDS-H-paniculata_contig12809:4966..5147Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12809 4967..5147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929002.234268-UTR-H-paniculata_contig12809:5147..54951622929002.234268-UTR-H-paniculata_contig12809:5147..5495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12809 5148..5495 -
1691480697.4860811-UTR-H-paniculata_contig12809:5147..54951691480697.4860811-UTR-H-paniculata_contig12809:5147..5495Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12809 5148..5495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12809.1766.1

>prot_H-paniculata_contig12809.1766.1 ID=prot_H-paniculata_contig12809.1766.1|Name=mRNA_H-paniculata_contig12809.1766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MTKGMAGAMNDKSIVRFDKTVQAVREGELYRSMACKLRDRDGVEQVEKGV
YLIVDGGYHQAYPVYLVCPAKEAETREELAWSKRLDSVRKDVECFGILKG
RFRISKLPILFRESAQVGNVVWTCCILHNMLHS
back to top

mRNA from alignment at H-paniculata_contig12809:4166..5495-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12809.1766.1 ID=mRNA_H-paniculata_contig12809.1766.1|Name=mRNA_H-paniculata_contig12809.1766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1330bp|location=Sequence derived from alignment at H-paniculata_contig12809:4166..5495- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTTGGCGAGCTTGCAGATTCTGGGCAGAGGGAATAGTTTCGATGAGGT CGGCCAGCTCTCCTTGATGAGCGAGTCCACTGCCCAAAGTGGGTTCCACA CATTTTGCAAGCGTTTCGCTGAAGATCTTTTTCATGAGTGGATTAAACTC CCTACCGGGGATGCCCTCGCAGCCACGATGAAGGCGTACGATGCGGTGGG CTTCAACGGGGCAGCAGGCTCGACTGATGTCACCCACATCGCATGGGGTT GCACCCCGGCATCACATACCCATCTCTAAACGGGCAAGGAAAGATTCTCG ACTCTCGCATACGAGGCAACGGTAGACCACTCGGGGTGGATACTTGGGAT GACGAAGGGAATGGCCGGAGCAATGAACGATAAATCCATCGTCCGTTTTG ACAAGACAGTACAAGCGGTCAGGGAGGGTGAACTGTACAGGTCGATGGCT TGCAAGCTCCGCGATAGGGACGGCGTGGAACAGGTGGAGAAGGGTGTTTA CCTCATCGTTGACGGAGGATATCACCAGGGTTGATGGTGATTGCTGCTGC ACCACCGTACGGAAATGCGTTGCATAATTTTACGTTATGTAGCAACAATT CTTCGTTTGTGACTAGCATACCCCGTTTAGTGTTGTGTATCAACCACAAC TCGCCTACGATGTACCGATTTGTTGATCCCAACGTAAACGGCTGTCCCAA GGTCCCACTTTGTGAGCCGCAACTCTAGACCCACCGAACATTCGTTTCAA ATATTACAACCAGACGAGGTGCAAACTAGGAGACAACAAGCTTCCTTGAT ATCAGTGGCAGCTACGCGAAATCCGTAGGAACACCACGTAGTGTATGTTG TTTAGAGCGCAGGCCATGCCACCGTTGACAAGGAATTTGCTAGGATAAAA CGCTTCTGTGTCTTTTTTTATGGTCGATTTCAACCGTCGGCATTATTGAA TGTCGTCTTCAGCTTCAATTTTCTCCGTACCGCTGATTGATGATTGATCA AGGTTGAGATAAATCTTACGAGCTGGGCGTTTCAATATCTGACACCGTTG ACCAGACGCCGCACAAGAACAACGTGTATCAACACCACTGTTCTCTCGTT TCTCCTCTTATTCTCAGTGAAGGAGTCTAGTGTGCCCGGCAAAAGAAGCT GAAACTCGAGAGGAATTAGCGTGGAGTAAACGTCTCGACAGCGTTCGAAA GGATGTGGAATGCTTCGGCATTCTCAAGGGGCGATTCAGAATTTCGAAGC TGCCCATTCTTTTCAGGGAGTCCGCTCAGGTAGGCAATGTGGTCTGGACA TGTTGCATCCTTCACAACATGCTGCATTCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12809:4166..5495-

>mRNA_H-paniculata_contig12809.1766.1 ID=mRNA_H-paniculata_contig12809.1766.1|Name=mRNA_H-paniculata_contig12809.1766.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig12809:4166..5495- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACGAAGGGAATGGCCGGAGCAATGAACGATAAATCCATCGTCCGTTT
TGACAAGACAGTACAAGCGGTCAGGGAGGGTGAACTGTACAGGTCGATGG
CTTGCAAGCTCCGCGATAGGGACGGCGTGGAACAGGTGGAGAAGGGTGTT
TACCTCATCGTTGACGGAGGATATCACCAGGATGACGAAGGGAATGGCCG
GAGCAATGAACGATAAATCCATCGTCCGTTTTGACAAGACAGTACAAGCG
GTCAGGGAGGGTGAACTGTACAGGTCGATGGCTTGCAAGCTCCGCGATAG
GGACGGCGTGGAACAGGTGGAGAAGGGTGTTTACCTCATCGTTGACGGAG
GATATCACCAGGCATACCCCGTTTACATACCCCGTTTATCTAGTGTGCCC
GGCAAAAGAAGCTGAAACTCGAGAGGAATTAGCGTGGAGTAAACGTCTCG
ACAGCGTTCGAAAGGATGTGGAATGCTTCGGCATTCTCAAGGGGCGATTC
AGAATTTCGAAGCTGCCCATTCTTTTCAGGGAGTCCGCTCAGGTAGGCAA
TGTGGTCTGGACATGTTGCATCCTTCACAACATGCTGCATTCGTCTAGTG
TGCCCGGCAAAAGAAGCTGAAACTCGAGAGGAATTAGCGTGGAGTAAACG
TCTCGACAGCGTTCGAAAGGATGTGGAATGCTTCGGCATTCTCAAGGGGC
GATTCAGAATTTCGAAGCTGCCCATTCTTTTCAGGGAGTCCGCTCAGGTA
GGCAATGTGGTCTGGACATGTTGCATCCTTCACAACATGCTGCATTCG
back to top