mRNA_H-paniculata_contig12805.1765.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12805.1765.1
Unique NamemRNA_H-paniculata_contig12805.1765.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12805.1765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12805contigH-paniculata_contig12805:1601..4274 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_004460.1
Exons2
Model size2066
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12805.1765.1prot_H-paniculata_contig12805.1765.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12805 1754..2778 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.7789416-UTR-H-paniculata_contig12805:1600..17531622929001.7789416-UTR-H-paniculata_contig12805:1600..1753Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12805 1601..1753 +
1691480697.379083-UTR-H-paniculata_contig12805:1600..17531691480697.379083-UTR-H-paniculata_contig12805:1600..1753Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12805 1601..1753 +
1622929001.8156574-UTR-H-paniculata_contig12805:2778..42741622929001.8156574-UTR-H-paniculata_contig12805:2778..4274Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12805 2779..4274 +
1691480697.4160728-UTR-H-paniculata_contig12805:2778..42741691480697.4160728-UTR-H-paniculata_contig12805:2778..4274Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12805 2779..4274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929001.7900186-CDS-H-paniculata_contig12805:1753..20381622929001.7900186-CDS-H-paniculata_contig12805:1753..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12805 1754..2038 +
1691480697.3881774-CDS-H-paniculata_contig12805:1753..20381691480697.3881774-CDS-H-paniculata_contig12805:1753..2038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12805 1754..2038 +
1622929001.805655-CDS-H-paniculata_contig12805:2646..27781622929001.805655-CDS-H-paniculata_contig12805:2646..2778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12805 2647..2778 +
1691480697.3964407-CDS-H-paniculata_contig12805:2646..27781691480697.3964407-CDS-H-paniculata_contig12805:2646..2778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12805 2647..2778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12805.1765.1

>prot_H-paniculata_contig12805.1765.1 ID=prot_H-paniculata_contig12805.1765.1|Name=mRNA_H-paniculata_contig12805.1765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MVLAAEDAFTFHEVASEGRTNGTRGLFELFGIQDDDGGYVAVIGLILLCI
AVLGCFYCKVYDPIKLWCQKKYKRWCVRGPRAVPPPPPGAEIPPERNHWY
LNKTLAIDQRDRSELGPITQSQQLQGGWYGAKNGGFGV*
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mRNA from alignment at H-paniculata_contig12805:1601..4274+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12805.1765.1 ID=mRNA_H-paniculata_contig12805.1765.1|Name=mRNA_H-paniculata_contig12805.1765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2674bp|location=Sequence derived from alignment at H-paniculata_contig12805:1601..4274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGACCTCCTGCAACTGTTCGCTAGAGTCTCACGTGCGACAATAGAGAGG
AGTGGGAACACGGTGACCGCTCTGGAGTAGAGAATCTGCGGTGTTGGCTA
TTTGGGGTGGACGAGCCACTGCTCCAACTTGGACGAAGGCGATACCATCA
TCAATGGTGTTAGCAGCGGAAGACGCTTTCACCTTTCATGAGGTAGCTTC
GGAGGGACGAACAAACGGAACACGGGGACTTTTCGAATTGTTTGGGATCC
AAGATGATGATGGAGGGTATGTGGCCGTCATCGGGTTGATTCTACTCTGT
ATTGCGGTCCTCGGGTGTTTCTACTGTAAGGTTTATGACCCTATCAAGTT
ATGGTGTCAAAAGAAGTACAAGAGGTGGTGTGTCAGGGGTCCAAGAGCAG
TACCGCCACCGCCGCCTGGCGCGGAGATACCGCCAGAGGTGAGCCAGCGC
TGTCGGCTAGTGCTATTAATAGGGTAGCCGGAGCGTCCCGCATCTATACA
AGAGCCCTCCCTTTCACACATCCCTTGTGGCCCTTTTACCCCAAGCTATT
CCGAAGGAGAGTATGTCTAGTTGATGTATGTGTTCACATAAGGTGGCCTA
GAGGAGGATGTACGTTATACGAACGTTACAAACTGTAGAGTCATTGCTGT
GGTATTCTTGTAATGAGTGTGCTTGTTGTAACTACTGGGTGATATTTACA
CGAGATTGCTTTGCAAAGAAATATACGAATGGTTTAAGATGAAGAACCTA
AGGTATCATCCAGTCCATCCGTGTTTTGCAAGCTTCCACTATTCATCAAC
ATAAAATGCTGCAGCTGTTCATGCACTGTATATGTATTCTTACGTCCCTC
ACTCAGTCTTGTGGAGTATGTCCCTCTCAATGAAAATCTGTGCGAAGTGT
CGTAATTTATATTCAGCCACTCGTACAACGGTTACACGATGCTCCAAATA
TTCAGGCCATACAACGTCTCAGTAAAGCCCTGTTTCTGTTCCCATGCTAC
TGACCATTCGACTATGTCTCACACGCGTCGTTTGTTGGCTTCTCAGCGCA
ACCACTGGTACTTGAATAAAACTTTGGCGATCGATCAGCGAGACCGAAGC
GAGCTGGGCCCAATAACGCAATCGCAGCAATTACAGGGAGGGTGGTACGG
CGCCAAAAACGGAGGCTTCGGGGTATGAATTGCAGTTTTTGTGTGATAGC
CGCAGATCCTCATGGACCGGACGGAGATAGGCCACCAAGTCAACCTCGAT
CTACCGAATCTTTGTAGATGGAGGGAAGACGGGTGGCGGCAGAACCACCT
GTTAATATTTTTTTCTTGTGTATTTTTCTTCACATCCAGGGATATAGCGG
TTGCTGCAGTAAATTCAATGTCAATCTGTTCTGTAGGGAGTGCGGTCGTT
GTGTTGCCGATGTATGCTCTTTCCGATACTTGTGGCAACGTAGCTTCACG
TTGCCTAGACGTCTGTGCGGTATAGAGGAAGGTGGGTGCAATTATTTCGG
TGCTGGTTTTCGTTCGTATCGAGGCTTTGCAGGTTAAACTCGAGCATGCA
CGGCCAGCCCTACCTTTTTATTATTTTATTGCTTGGCTTGCGTAATGGGC
TCCCAATTGCTCCGCACTATAGATAGCCTGACCTCGTCCGAGGGAGGTGT
AGTGCCCAATACTGGCTCGCATTGACTATGTTGGTATAGGCGATTGCTCC
GACCGAGCCATTTTTGTCTCGGGTAGATTCTATTTTCAGAGGGCGATACT
ACTGTTGCCTTGGCTGTGATCACGGCTTGCTATTATTGTCACGTGAGGTC
TCTTCGCGCGGGGAATCTGAATCCTGTGCGGGATGCCTAGAGATGGAAAG
GGGGCGGGTATTTGCTGTTGGGTTGCTTCGTCTTCTATCAGCAGGGCCTG
CTATTGTATTGGTACGACACTCTACTTGAAGCTCAAACTTCTAACAAGTG
TTTATTCAGATTTCTAAAAATGGTGAAGTTGCCGTATTCTGCTGGACTGC
GTTTGGCACTCTCCCGGAGACCAATGCTTGGTTCTCGGTGCGATAGGTGC
GAGCAACATAAATTGATAGGATGGAAAAGTTGTAGACGCAAAGCCATCGG
CCCAGAGTGCAGGATTTTGTAGCGAGCAGTGACGGGTGGCAGTGGCCTTT
TATCCGTTCATATGAGTGTGTGGACAAAGACTTTTGTGTAAAAATCACGC
ATAGCTGTGTTCATTAGGGTTGCTCCTTAGCATTTGGCTGACAGAAAAAT
CGCAGCAAAAAAAAGGCGATCGGTATGGGTTGGTGCTGTTCGGACGAGGG
TTTGCACCAACCAAGAAATCACGACTACCTTTCTATAACTTGTAGCATCA
TCGAGCCCATTCAGGCCCTACTCAGATGCCAAAATTCGTGACCCCAAAGT
TCAAGTGATTCTCTCCATAGCATCCCTCAATAAAACGGACTCCATGTTTG
GAGCAAACTCATTACCGCCACAGGCGCGAAGATCGATGAGGGGCGTTTCT
TCGGGTGGACGACTTCGTGGGTCATCTACAACATTCGTCTCTGCCATAGT
CTTGTATCCCCCCCTATACTTGAGTTGGTGCACGTGAAGAGGGGGGTGTT
GGGTCACTTTGTGATGGATTCAGGTTATCTAAATACTCTATTTGAATCGC
TTGATAATTTTCGCCAATATGCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig12805:1601..4274+

>mRNA_H-paniculata_contig12805.1765.1 ID=mRNA_H-paniculata_contig12805.1765.1|Name=mRNA_H-paniculata_contig12805.1765.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig12805:1601..4274+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTAGCAGCGGAAGACGCTTTCACCTTTCATGAGGTAGCTTCGGA
GGGACGAACAAACGGAACACGGGGACTTTTCGAATTGTTTGGGATCCAAG
ATGATGATGGAGGGTATGTGGCCGTCATCGGGTTGATTCTACTCTGTATT
GCGGTCCTCGGGTGTTTCTACTGTAAGGTTTATGACCCTATCAAGTTATG
GTGTCAAAAGAAGTACAAGAGGTGGTGTGTCAGGGGTCCAAGAGCAGTAC
CGCCACCGCCGCCTGGCGCGGAGATACCGCCAGAGATGGTGTTAGCAGCG
GAAGACGCTTTCACCTTTCATGAGGTAGCTTCGGAGGGACGAACAAACGG
AACACGGGGACTTTTCGAATTGTTTGGGATCCAAGATGATGATGGAGGGT
ATGTGGCCGTCATCGGGTTGATTCTACTCTGTATTGCGGTCCTCGGGTGT
TTCTACTGTAAGGTTTATGACCCTATCAAGTTATGGTGTCAAAAGAAGTA
CAAGAGGTGGTGTGTCAGGGGTCCAAGAGCAGTACCGCCACCGCCGCCTG
GCGCGGAGATACCGCCAGAGCGCAACCACTGGTACTTGAATAAAACTTTG
GCGATCGATCAGCGAGACCGAAGCGAGCTGGGCCCAATAACGCAATCGCA
GCAATTACAGGGAGGGTGGTACGGCGCCAAAAACGGAGGCTTCGGGGTAT
GACGCAACCACTGGTACTTGAATAAAACTTTGGCGATCGATCAGCGAGAC
CGAAGCGAGCTGGGCCCAATAACGCAATCGCAGCAATTACAGGGAGGGTG
GTACGGCGCCAAAAACGGAGGCTTCGGGGTATGA
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