mRNA_H-paniculata_contig12790.1750.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12790.1750.1
Unique NamemRNA_H-paniculata_contig12790.1750.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: D7G424_ECTSI (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G424_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.490e-34
Identity = 59/79 (74.68%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:    1 QGVRCHAWLYLPRIASGDGHA-KPPPLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDPWR 234
            +GVRCHAWLY+P        A + PP+V+MAHGMG QKDMGLGKYAEAF  RG+AT VFDYRTFGGSDGMPRNLVDPWR
Sbjct:   55 KGVRCHAWLYVPTEKGESAEAGRLPPIVLMAHGMGGQKDMGLGKYAEAFTERGIATLVFDYRTFGGSDGMPRNLVDPWR 133
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A7S2XCL5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2XCL5_9EUKA)

HSP 1 Score: 105 bits (261), Expect = 3.850e-26
Identity = 49/78 (62.82%), Postives = 56/78 (71.79%), Query Frame = 1 
Query:    4 GVRCHAWLYLPRIASGDGHA---KPPPLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDP 228
            GVRCHAWLY P  +S    A   +PPP+V+MAHG G+QKD GL +YA AF  RG A FVFDYRTFG S+G PRN V P
Sbjct:  125 GVRCHAWLYRPEKSSATPAASPLQPPPVVVMAHGFGAQKDFGLERYAAAFVARGQAVFVFDYRTFGASEGTPRNHVSP 202
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A7C3X5F7_9ACTN (Alpha/beta fold hydrolase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C3X5F7_9ACTN)

HSP 1 Score: 102 bits (253), Expect = 1.800e-24
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    7 VRCHAWLYLPRIASGDGHAKPPPLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDPWR 234
            +RC AWLYLP        A+ PP+V+MAHG G+Q+D GL  YAE FA RG+A F+FDYR FG S+G PRNLV+PWR
Sbjct:   23 LRCAAWLYLPE------GARRPPVVVMAHGFGAQRDFGLQPYAERFASRGLAVFLFDYRNFGASEGRPRNLVNPWR 92
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A7S4FIE2_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FIE2_9EUGL)

HSP 1 Score: 99.4 bits (246), Expect = 2.330e-24
Identity = 46/76 (60.53%), Postives = 56/76 (73.68%), Query Frame = 1 
Query:    1 QGVRCHAWLYLPRIASGDGHAKPPPLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDP 228
            +GVRCHAWL LP        A PPP+V+MA G+ +QKDMG  +YAE FA  G+A+++ DYRTFGGSDG PRN VDP
Sbjct:  100 EGVRCHAWLVLPPPVVE--RATPPPVVVMAFGIAAQKDMGFLRYAEEFAAAGLASYLIDYRTFGGSDGAPRNSVDP 173
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A7S1DXJ0_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DXJ0_HEMAN)

HSP 1 Score: 101 bits (252), Expect = 3.470e-24
Identity = 44/78 (56.41%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:    1 QGVRCHAWLYLPRIASGDGHAKPPPLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDPWR 234
            +GV CH WL LP++  G     PP +V++ HG+GSQKDMGL +YAE+FA  G+A+ V DYR FGGSDGMPR+++DP +
Sbjct:  119 EGVNCHGWLVLPKLPEG---TPPPGIVVVFHGLGSQKDMGLVRYAESFAEGGIASLVIDYRGFGGSDGMPRHMIDPMK 193
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A150GSC7_GONPE (Hydrolase_4 domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GSC7_GONPE)

HSP 1 Score: 102 bits (255), Expect = 4.260e-24
Identity = 51/85 (60.00%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 QGVRCHAWLYLPRIAS------GDGHAKPP-PLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDPWR 234
            QG  C AWLY P  A+      G G   PP P+VIMAHG+G QKD+GL ++A+AFA  GMA FVFDYRTFGGSDG PR+ V P R
Sbjct:   65 QGTACEAWLYTPTAATAAATAAGGGRRWPPFPVVIMAHGLGGQKDLGLHRFADAFAAAGMAAFVFDYRTFGGSDGEPRHWVSPRR 149
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A2V0NRA0_9CHLO (Hydrolase_4 domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NRA0_9CHLO)

HSP 1 Score: 101 bits (251), Expect = 1.050e-23
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 1 
Query:    4 GVRCHAWLYLPRIASGDGHAKPPPLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDPWR 234
            GV C AWLY P+  +     +PPP+V+M HG+G+QKDMGL  YAE FA  GM  FVFDYR+FGGSDG PRN + P R
Sbjct:   59 GVECEAWLYAPKRPA----TRPPPVVMMGHGLGAQKDMGLHVYAERFAAAGMVVFVFDYRSFGGSDGEPRNWISPAR 131
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A7S3ZD74_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZD74_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 1.190e-23
Identity = 49/83 (59.04%), Postives = 56/83 (67.47%), Query Frame = 1 
Query:    4 GVRCHAWLYLPRIA-------SGDGHAKPPP-LVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDP 228
            GVRCHAWLYLP          S D   KPPP +V+MAHG G+QKD GL +YA  F  RG+A F+FDYRTFG S+G PRN V P
Sbjct:   78 GVRCHAWLYLPEEKGTAKTKKSEDQDGKPPPPVVVMAHGFGAQKDFGLERYASVFVDRGLAVFMFDYRTFGASEGTPRNNVAP 160
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A0D2M9H5_9CHLO (Hydrolase_4 domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2M9H5_9CHLO)

HSP 1 Score: 100 bits (250), Expect = 1.580e-23
Identity = 46/78 (58.97%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:    1 QGVRCHAWLYLPRIASGDGHAKPPPLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDPWR 234
            QG++  AW+Y P+  +    A PPP+V+M HG+G+QKDMGL  YA  FA  G+A FVFDYRTFGGSDGMPRN + P R
Sbjct:   58 QGLQLEAWVYRPKHPA----ASPPPVVVMGHGLGAQKDMGLHNYASRFADSGLAVFVFDYRTFGGSDGMPRNWISPRR 131
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BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Match: A0A8I1ZNT0_9DELT (Alpha/beta fold hydrolase n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A8I1ZNT0_9DELT)

HSP 1 Score: 99.4 bits (246), Expect = 1.650e-23
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1 
Query:    1 QGVRCHAWLYLPRIASGDGHAKPPPLVIMAHGMGSQKDMGLGKYAEAFAVRGMATFVFDYRTFGGSDGMPRNLVDPW 231
            +G RC AWL+LP     DG  +PP +V+MAHG+  QKD GL  YAE FA RGMA  VFDYR +GGS+G PRNLV+PW
Sbjct:   11 RGQRCSAWLFLP-----DGRERPP-VVVMAHGLAGQKDFGLQAYAEYFAGRGMACLVFDYRNYGGSEGEPRNLVNPW 81
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12790.1750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G424_ECTSI2.490e-3474.68AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A7S2XCL5_9EUKA3.850e-2662.82Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7C3X5F7_9ACTN1.800e-2460.53Alpha/beta fold hydrolase n=1 Tax=Actinomycetia ba... [more]
A0A7S4FIE2_9EUGL2.330e-2460.53Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1DXJ0_HEMAN3.470e-2456.41Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A150GSC7_GONPE4.260e-2460.00Hydrolase_4 domain-containing protein n=1 Tax=Goni... [more]
A0A2V0NRA0_9CHLO1.050e-2359.74Hydrolase_4 domain-containing protein n=1 Tax=Raph... [more]
A0A7S3ZD74_9EUKA1.190e-2359.04Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A0D2M9H5_9CHLO1.580e-2358.97Hydrolase_4 domain-containing protein n=1 Tax=Mono... [more]
A0A8I1ZNT0_9DELT1.650e-2361.04Alpha/beta fold hydrolase n=2 Tax=unclassified Del... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12790contigH-paniculata_contig12790:4946..7390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue7.3e-28
Seed eggNOG ortholog2880.D7G424
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Serine aminopeptidase, S33
EggNOG OGs2RZEK@2759,COG1073@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928999.7932086-CDS-H-paniculata_contig12790:4945..50561622928999.7932086-CDS-H-paniculata_contig12790:4945..5056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12790 4946..5056 +
1691480696.6094267-CDS-H-paniculata_contig12790:4945..50561691480696.6094267-CDS-H-paniculata_contig12790:4945..5056Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12790 4946..5056 +
1622928999.816219-CDS-H-paniculata_contig12790:7264..73901622928999.816219-CDS-H-paniculata_contig12790:7264..7390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12790 7265..7390 +
1691480696.6186109-CDS-H-paniculata_contig12790:7264..73901691480696.6186109-CDS-H-paniculata_contig12790:7264..7390Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12790 7265..7390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12790.1750.1prot_H-paniculata_contig12790.1750.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12790 4946..7390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12790.1750.1

>prot_H-paniculata_contig12790.1750.1 ID=prot_H-paniculata_contig12790.1750.1|Name=mRNA_H-paniculata_contig12790.1750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=79bp
QGVRCHAWLYLPRIASGDGHAKPPPLVIMAHGMGSQKDMGLGKYAEAFAV
RGMATFVFDYRTFGGSDGMPRNLVDPWR*
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mRNA from alignment at H-paniculata_contig12790:4946..7390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12790.1750.1 ID=mRNA_H-paniculata_contig12790.1750.1|Name=mRNA_H-paniculata_contig12790.1750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2445bp|location=Sequence derived from alignment at H-paniculata_contig12790:4946..7390+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCGTGAGATGTCACGCCTGGTTGTACCTTCCTCGTATTGCCTCAGG
CGACGGACACGCTAAGCCGCCTCCGCTGGTGATAATGGCGCACGGCATGG
GGTCTCAAAAGGTAAGAGACATGGAAAATAACCAGTGGTGGCAAGTAGGA
AGTAGTAGTAATCGTATGTAACACGTGTGGAACTTGTGGAACGATCGTCG
TGCTCTCAGCAGTATAGCGTTCTTGGGACCGTGGTATGTGCTACGGTTCA
ATTGGATATTCTGCTATAGTATTTGTGTGCATGCATGTGTGTTAGTGTAT
GTGTTTTCTTCGTTGTGTGCCAAGGTTTAGCTGGTGGCGACAGTGGCGGT
GATTTATTTCGCGATGAAAAATGTGCTTTGTTGCAAAGCCTTGTTTTTGT
TCTTTTTTAACCCCCGGAAGGCTGAGGCAAAAGCCTTTACCGATGCTTCG
ATACTTGAGTATTTTACCGAACGAAGTATTTCTACATTTCCTTTAACAGA
ACAGAGTTATTTCTTCCTCTGCGGGGTAGGCGCCACCTCGGTTCGGCCGA
ACCAAGTAGGCAGTATTAACTGTTTTATTTGTTATGTGTACTTGGTGGCG
GGATATTATTCGTGAAGGATTATTCGAAGGGCATCATACTCTAGCTGTTC
AAGATGGTTTACGTTTGGGTATGATTTTATTTATTGTTTCTGAAATTATG
TTTTTTTTTGCTTTTTTTTGGGCTTTTTTTACTTAATCTCTTTCACCTGT
ATTCAATATTGGAGGTGTTTGGCCACCAATGGGTGTGGGGGTTGCACCCA
CTAACAGACCTCTGACTAGACTTCCAGTCATGCTCAGTTCACGAGCTACC
CTACCCGTTCGGACGTAGGTCCGTGTGCAAGGCCGTGTTTCTGAATTCGA
TAGCAGCGTAATCGTCATGTCGGAACTCCTTTCCAATTCTATACTTGAGT
AATTTCTAGAGTCGAATATTCGCGCACATCATGCCCCACGTGCGAGCATA
GCGAGCCCGCCACGAGCGCAGCGATCAATTGGCGTGGGTCCACGAGTAGT
ACGCCATAATCTACTTTGACGAAGAACATGTATTTCATTGAAAAAATAAA
GAGAAAGTTCTAAACGTGTGTCGCGACGTAAGTTGTGTGTTTTATGTGAC
ATGATAGGTAAAACGAAATACCGAAGCAAAGGTTGACACATTCAACAACT
AGTTAGTCGTCTGAAATGACCAATTGGGTGATGGTACCCCTTAACACCAA
AGTCCCGACCCGCAACGGGTGTCGAGCTGAAGAAGGCATCGGCTATAACA
TATAGTACCCACGCATGCGTCCACACGGCCCGAAAGCGTAGAATGTAAAC
AGAGTCGGAGAGACAGGAAGCTTCGTTTTCGATGAGGGCTAAGAGGTCGT
CATTATTCGTTTCTGGCAACTACTTAGTCCTTGTATTGTTGCAAAGATTC
AACATCTCACTCATACAGTCTTTAACACATCCAAGCTAGAGTATCTCCGC
CGTAAATAGCGCCTCTCGTATTTTGTACACGATAGGACTATACCCTGCTG
TTAAAATTCCAAACCCTTTCGTGCACACAGCGTGTTACTGTCATGTGAGT
ATTGCCGCTGTAGAGTGCAGACTTGAACGTACGTTTAACAATCTCCCGTA
TATCGCCAGTGGTTCTATTGAAAGTGGTTTGTGCATGCTCTTGGCCAAAA
CTGTGCGTGTGCCCTTGAAAGCTTTTGATTTTCATTGGAGTATGACCACA
GTGACGCCCATTCAGTGCGTGCTGGCCCTCGCTTGACCGACGGATTCGCT
GCGCTGGCCGTGGCTCGCTTACCCTCCCATCTCGCATGAATATTCATTTT
CCAGGAGTTACTTGAGCACAGAATTCAAGATCTATTCCGAATCTACGACC
ACCTCCATCCATCCTATCGCTTAAACTGACAAAGATACCAAAGAAATATA
GTAAAGAATGACTTGTTTTTGTTCGTATTCCTTTACCCCCCCTCCCTCCA
ATCGCCTGGTGAATTATTTTTGCTAATAAGCGGAAAGAGCTGAATTTTGA
GCTGAGCTTCAGAGCCATTAATTCAACTGACTATGGCAGCGTCAACTTAG
GAAAAAACAAATTGAGTGTACGGCGTTCATGTGAAAACTACTTCATGTCA
TACCAACCTACAGTACAGTACACGTACCGCCCCCTCCCTCCCTCCCTTGA
TCTACATCCCCGTTTTTCGAATTAACACCCCCCTGGCCGAGCGCCTATTC
CCCGTTCTATATATTGGGGTAGCACAGCTACGTGAGTATGTTAACGAGTG
ACGAATGCATCAATTACAGGATATGGGTCTGGGGAAGTACGCGGAGGCAT
TTGCTGTACGGGGCATGGCCACTTTCGTCTTCGACTACAGAACCTTCGGA
GGGTCTGATGGCATGCCGAGGAATCTAGTGGACCCGTGGCGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12790:4946..7390+

>mRNA_H-paniculata_contig12790.1750.1 ID=mRNA_H-paniculata_contig12790.1750.1|Name=mRNA_H-paniculata_contig12790.1750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at H-paniculata_contig12790:4946..7390+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGCGTGAGATGTCACGCCTGGTTGTACCTTCCTCGTATTGCCTCAGG
CGACGGACACGCTAAGCCGCCTCCGCTGGTGATAATGGCGCACGGCATGG
GGTCTCAAAAGCAGGGCGTGAGATGTCACGCCTGGTTGTACCTTCCTCGT
ATTGCCTCAGGCGACGGACACGCTAAGCCGCCTCCGCTGGTGATAATGGC
GCACGGCATGGGGTCTCAAAAGGATATGGGTCTGGGGAAGTACGCGGAGG
CATTTGCTGTACGGGGCATGGCCACTTTCGTCTTCGACTACAGAACCTTC
GGAGGGTCTGATGGCATGCCGAGGAATCTAGTGGACCCGTGGCGGTGAGA
TATGGGTCTGGGGAAGTACGCGGAGGCATTTGCTGTACGGGGCATGGCCA
CTTTCGTCTTCGACTACAGAACCTTCGGAGGGTCTGATGGCATGCCGAGG
AATCTAGTGGACCCGTGGCGGTGA
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