mRNA_H-paniculata_contig1277.1740.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1277.1740.1 vs. uniprot
Match: D7G8I9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I9_ECTSI) HSP 1 Score: 185 bits (470), Expect = 4.850e-44 Identity = 166/449 (36.97%), Postives = 229/449 (51.00%), Query Frame = 3
Query: 1470 PGGALAGVLGAAWVLAEKCGSVQATGASTARRNSGTV----VQQLESLLTAFVSAESCAITQGSDGATVTKTGSPPPKKRGKAGASGNLAPSV------RRLRFCAFDLSSVEMPSDARKNSDAPAKEIVSSLERVVTQSDQLQ-----RTLCSGGSGGGPTTAAG-------SIWVALLRGLRTLAD-ANPVSA-VVETVRNGCLTLGSQVSGKIVTRAAEFLLDELKPLQTMLQVPV-QXXXXXXXASILSALVRFNLRRLLNPPPLSYTKPSEIMPFVAPVPSTDRS-EVHKLMQLVPTESEGVKKTGA---ARDGAASAVLTMAMGKLHGYCESDAEKMVGGAEAFLSVKDILVTDNRNNKPRRKLPDAAVLEMLQRSSYRDVLEMLGTRAREARKYLVDTVDVMAALNARSFVLALLEHPGVEGAIARAGGWGDVEKFSSSLEK 2729
P GAL GVL A VL +K A+G A V ++Q ES LTA V+ E+CA+ T PP G A + +RFCAFDLS+V+MP+DA ++SDA AKE+ L RVV S LQ R +GG+G A G S+ A +RGL+T+A A P S +V + R C LG+++S ++V RAA LL+ + L+ +V + A +LSAL+RFNLR LLNPPP I STD+ +VH+++ LV ES+ K A RDGAASAVL+ A+ +L+ + SDA +++ AEAF V D + R Y D +A AR + TVD++AA+ AR+FVL LLE PGVE A+++A GWG++E+ S+ L K
Sbjct: 924 PRGALTGVLATARVLMQK-----ASGPGRASSLQSAVPPEAMRQFESFLTAIVATEACAMKHELRAGTEAGETVPPSAGAGVAXXXXXXXXXXXXXXXXKGVRFCAFDLSTVDMPTDAIEDSDAAAKEVAQCLARVVASSKLLQEGMPKRASGAGGAGKAAAVADGGIGGGLASVVKAFMRGLKTVAGVAEPDSCPLVASARGACRELGTEISTEVVKRAAALLLESFEALEGGAEVAATRCPLRQRLAIMLSALIRFNLRTLLNPPPHKSLSSLHI------ADSTDKPRKVHEVILLVSEESKPASKKDAFDPTRDGAASAVLSRALRRLYEF--SDAVEVMSRAEAF-------VADMKGKN---------------RDLYGD-----EEKASRARLHSQSTVDIVAAIRARNFVLELLEFPGVELAVSQARGWGELERLSTELRK 1332
BLAST of mRNA_H-paniculata_contig1277.1740.1 vs. uniprot
Match: A0A6H5LA33_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LA33_9PHAE) HSP 1 Score: 147 bits (372), Expect = 3.040e-32 Identity = 127/328 (38.72%), Postives = 176/328 (53.66%), Query Frame = 3
Query: 1470 PGGALAGVLGAAWVLAEKCGSVQATGASTARRNS--GTVVQQLESLLTAFVSAESCAITQGSDGATVTKTGSPPPKKRGKAGASGNLAPSV-------RRLRFCAFDLSSVEMPSDARKNSDAPAKEIVSSLERVVTQSDQLQ-----RTLCSGGSGGGPTTAAGSIW-------VALLRGLRTLAD-ANPVSA-VVETVRNGCLTLGSQVSGKIVTRAAEFLLDELKPLQTMLQVPV-QXXXXXXXASILSALVRFNLRRLLNPPPLSYTKPSEIMPFVAPVPSTDRS-EVHKLMQLVPTESEGVKKTGA---ARDGAASAVLTMAM 2369
P GAL GVL A VL +K G +++ ++S ++Q ES LT V+ E+CA+ T + G P G A+G +A + + +RFCAFDLS+V+MP+DA ++SDA AKE+ L RVV S LQ R +GG+G A G I A +RGL+T+A A P S +V +VR C LG+++S K+V RAA LL+ + L+ +VP + A +LSAL+RFNLR LLNPPP I STD+ +VH+++QLV ES+ K A RDGAASAVL+ A+
Sbjct: 1140 PRGALTGVLATARVLMQKASG---PGGASSLQSSVPPEAMRQFESFLTTIVATEACAMKHELRAGT--EAGETVPPSAGAGAAAGTVAAAKAAEGKKKKGVRFCAFDLSTVDMPTDAIEDSDAAAKEVAQCLARVVASSKLLQEGMPKRASGAGGAGKAAAVADGGIGGGLASAVKAFMRGLKTVAGVAEPDSCPLVSSVRAACRELGTEISTKVVKRAAALLLESFEALEGGAEVPATRCPLRQRLAIMLSALIRFNLRTLLNPPPHKSLSSLHI------ADSTDKPRKVHEVIQLVSEESKPASKKDAFDPTRDGAASAVLSRAL 1456
BLAST of mRNA_H-paniculata_contig1277.1740.1 vs. uniprot
Match: D7FV49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV49_ECTSI) HSP 1 Score: 133 bits (335), Expect = 8.950e-28 Identity = 146/523 (27.92%), Postives = 220/523 (42.07%), Query Frame = 3
Query: 1578 VVQQLESLLTAFVSAESCAITQGSDGATVTKTGSPPPKKRGKAGASGNLAPSVRRLRFCAFDLSSVEMPSDARKNSDAPAKEIVSSLERVVTQSDQLQR--------TLCSGGSGGGPTTAAGSI--WVALLRGLRTLADANPVSAVVETVRNGCLTLGSQVSG---------KIVTRAAEFLLDELKPLQTMLQVPVQXXXXXXXASILSALVRFNLRRLLNPPPLSYTKPSEIMPFVAP------------VPSTDRSEVHKLMQLVPTESEGVKKTGAARDGAASAVLTMAMGKLHGYCESDAEKMVGGAEAFLSVKDILVTDNRNNKPRRKLPDAAVLEMLQRSSYRDVLEMLGTRAREARKYLVDTVDVMAALNARSFVLALLEHPGVEGAIARAGGWGDVEKFSSSLEKVKDFPDADAHLTLLSDMGALKAWLGREETWCSA----------------GRDQRAEN------AFKRLDRLIVTCAENRSAV--IKGIEDREAENARLAAITTNSSSG 2981
V+ L L A++ AE+CA+ + +D A + +RG +GN P R +R CAF+ S+V MP D S+ A E+V L+ VVT +++ +GGSG + + W A +R A G K + +A LL EL+PL+ + V+ AS+LS+L+RF+LR L+ PP T+ E +P +P + S+VH ++ + T D A + A+ +L G+ A +++ AEAF + + + P R A + L T DV+ A+ AR FVL+LLE GVE AI AGGWG+VE ++SSL+ +K D D LTLLSD+GA KAWL + TW A GR +RA A++ L + I+ A +R +K E + A + R+ A S+G
Sbjct: 1431 VLPLLRDLSDAWMDAEACAL-KNTDDADDDEM-----HRRGAVVGAGNAGPP-RVVRLCAFNFSTVGMPLDTATGSELQALEVVRCLQGVVTALHKIENFHRRCNLVLKTTGGSGDESNGNSHRLVAWRAFQHEVRAAAANXXXXXXXXXXXXXXXXXXRGRQGRRPSAGMKEKEMAKAGLVLLGELEPLERSPEGLVKSPLRDRLASMLSSLIRFHLRIRLDAPPERLTRAPEALPSCGDPSYAEAKRRAEVLPPSHFSKVHTVVDVSET------------DATLGASFSKALFRLEGFSCEMAVEVLSAAEAFAAADQTRLAERDGGCP--------------------------ARVESAGRLLSATADVVDAVRARKFVLSLLELEGVEEAIVEAGGWGNVEMWASSLKGLKGCADIDEPLTLLSDVGAFKAWLMSKPTWGHATAEGILRSLLELRALRGRVERARQRWMCPEAYQALRQEILEAAHDRFRFPELKKKEGKAAADGRVEAAVVEQSAG 1908
BLAST of mRNA_H-paniculata_contig1277.1740.1 vs. uniprot
Match: A0A836CH73_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CH73_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.970e-21 Identity = 152/552 (27.54%), Postives = 213/552 (38.59%), Query Frame = 3
Query: 1410 AVTAGNVERVAREMFGKVYLPGGALAGVLGAAWVLAEKCGSVQATGASTARRNSGTVVQQLESLLTAFVSAESCAITQGSDGATVTKTGSPPPKKRGKAGASGNLAPSVRRLR--FCAFDLSSVEMPSDARKNSDAPAKEIVSSLERVVTQSDQLQRTLCSGGSGGGPTTAAGSIWVALLRGLRTLADA----------------NPVSAVVETVRNGCLTLGSQVSGKIVTRAAEFLLDELKPLQTMLQ----------------VPVQXXXXXXXASILSALVRFNLRRLLNPPPLSYTKPSE-------IMPFVAPVPSTDRSEVHKLMQLVPTESEGVKKTGAARDGAASAVLTMAMGKLHGYCESDAEKMVGGAEAFLSVKDILVTDNRNNKPRRKLPDAAVLEMLQRSSYRDVLEMLGTRAR--EARKYLVDTVDVMAALNARSFVLALLEHPGVEGAIARAGGWGDVEKFSSSLEKV------------------KDFPDADAHLTLLSDMGALKAWLGREETWCSAGRDQRAENAFKRLDRLIV 2882
A+TA V AR FG ++PG + VL AA LAE+ G + + + L L A V+ E+ A+ G A + A S R +R FCA+DLS+++ P DAR +S + + L V +S L R + GGS T+ +ALL+GL T+A A A+ V C +G+ + A LL E+ L + V + ILS+ +RF+LRRLLN PP S T ++ + + RS V +L++L GAA + A S+VLT A+ L A++ V AEAFL + T P A V R G R+ A +L V A A +FVL+L++ PG AIA AGGWG VE +S L V D HL +L D+ AL A L E G RA A +L L++
Sbjct: 322 AITATAVCECARRWFGDTHVPGCVMPVVLAAAHCLAERSGG--------GXXGTSRMCEPLLPLFKALVALEAAAVL-------------------GDAASGATAASSARPMRVLFCAYDLSTIDPPCDARPDSAQHVEAVALLLMAVRRESMALCRAMGHGGS-----TSRELPMLALLQGLATVARAAGTGSAATAGKAVLPLEQSGALKAVVEQACRDIGTAACARYAGGCATLLLAEISCLHMQVSAGGAPGDAQAQLSGPGVSSESFLRRRLLEILSSALRFHLRRLLNAPPQSPTAATDMERAGVALRAAAGSSAAAVRSAVWQLVRLARASD------GAADESALSSVLTQALAMLWHAQRGAAQRSVAAAEAFLQQRGGGAT----------APAAQVRSTKAARPARVTKAGGGARSEYEAALVHLEHVSGVQGAAAASTFVLSLMDWPGAAEAIAVAGGWGPVETLASQLADVCGGETAGAAGSGSSSSGGADTGHGPVHLCMLKDINALIAELRGGEAEMG-GVAARAAQAAAQLQALVL 824
BLAST of mRNA_H-paniculata_contig1277.1740.1 vs. uniprot
Match: A0A7S2V8C5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V8C5_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.510e-10 Identity = 64/222 (28.83%), Postives = 104/222 (46.85%), Query Frame = 3
Query: 2139 ASILSALVRFNLRRLLNPPPLSYTKPSEIMPFVAPVPSTDRSEVHKLMQLVPTESEGVK-KTGAARDGAASAVLTMAMGKLHGYCESDAEKMVGGAEAFLSVKDILVTDNRNNKPRRKLPDAAVLEMLQRSSYRDVLEMLGTRAREARKYLVDTVDVMAALNARSFVLALLEHPGVEGAIARAGGWGDVEKFSSSLEKVKDFPDADAHLTLLSDMGALKAWL 2801
AS+ S +RF+LRR NP P +YT P+ + P P RS+VH L+ VP + GV +GAA DG ++++ A+ ++ + +++E A A + T ++ + + T A +L + L+A F+L+L P ++ A+ AGG +E+ + LE V + DAHL +L D+ ALKAWL
Sbjct: 12 ASLASCCLRFHLRRQFNPNPPNYTTPNPKLSPPKPKPGV-RSKVHMLVCPVPVK--GVSHSSGAAADGCITSIMVHALRQIRNWALTESEATAATAAAAAERQS--TTGSQTGE-------------------------VSTSALTKEDHLQLEKSRIIGLHAAKFLLSLFTWPEIDEALDAAGGLHMIEELAVVLESVVH--EDDAHLVMLKDISALKAWL 201 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1277.1740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1277.1740.1 >prot_H-paniculata_contig1277.1740.1 ID=prot_H-paniculata_contig1277.1740.1|Name=mRNA_H-paniculata_contig1277.1740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=638bp MIPSRIVGGGAAIVFRALGEKGNRAVESVGVRARSKEDTCRGNAIAGKIEback to top mRNA from alignment at H-paniculata_contig1277:10604..23214+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1277.1740.1 ID=mRNA_H-paniculata_contig1277.1740.1|Name=mRNA_H-paniculata_contig1277.1740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=12611bp|location=Sequence derived from alignment at H-paniculata_contig1277:10604..23214+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1277:10604..23214+ >mRNA_H-paniculata_contig1277.1740.1 ID=mRNA_H-paniculata_contig1277.1740.1|Name=mRNA_H-paniculata_contig1277.1740.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3828bp|location=Sequence derived from alignment at H-paniculata_contig1277:10604..23214+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |