mRNA_H-paniculata_contig12761.1734.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12761.1734.1 vs. uniprot
Match: D8LN09_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN09_ECTSI) HSP 1 Score: 352 bits (903), Expect = 2.720e-112 Identity = 188/344 (54.65%), Postives = 227/344 (65.99%), Query Frame = 3 Query: 54 WGGEDYSQYGYEPEYEMQDENDFSDQATLERWRHERLLANDRWQFGLYGKQAVGHWFGIWQEYVATDLGVEDDLDDEETSGLAPMIGLIPGSTFEANTRVTRRVIDSEAGKKVFVH----AHELPDRDATKDLSVQIPAPVTETLFTDSFRGGNGTQVVGNTYTIAAERC-SEDERDDIWVELGLRARDVRVRCLFQYGR------DEED--------------GIANVQRVYLAREGLERLPLEDGVADEELYGAAGKGLYDVHPRSRSPLYFSIYAQGGLTIRFPLKVAAGDGGVFCVDWTARDIRYQADRSFDLLDGSCSRLEVIEIGTADSKIFLPEEKF 1010 +G DYS+YGYEPE+E+Q E +D+ TL RWR E+LLANDRWQFG YG Q VG+W G WQEYVA DL D + S + MIG+IPG F A T++TRRVI+S K+F H A + A S P PV ETLF+DSFRGGNGTQVVGN YT A + D W+E+GLR +DVR+RC+F+YG D E G +++RV++ REGL+RLP ED + ELYG+AGKGLYD SRSPLYFSIYA+GGLT+RFPL+V G GGVF VDWTA RYQADR FD+LDGS RLEV EIGT D+++FLP EKF Sbjct: 135 YGSADYSEYGYEPEFELQGEEPNADEETLARWRLEKLLANDRWQFGKYGTQNVGNWIGSWQEYVAEDLSAGSDPE----SDIGAMIGIIPGKKFVATTKITRRVIESAEDTKIFEHEQGQATGGEGQGAVGYESEACPQPVVETLFSDSFRGGNGTQVVGNAYTSAETLAVAAGGADGPWIEVGLRVQDVRMRCVFEYGPGAGGSVDAEXXXXXXXXXXXXXXXGSTSIRRVFVVREGLDRLPPEDADKEPELYGSAGKGLYDPPSLSRSPLYFSIYAEGGLTMRFPLRVEEGQGGVFSVDWTAGSRRYQADRVFDVLDGSLRRLEVTEIGTQDAEVFLPMEKF 474 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12761.1734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12761.1734.1 >prot_H-paniculata_contig12761.1734.1 ID=prot_H-paniculata_contig12761.1734.1|Name=mRNA_H-paniculata_contig12761.1734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=304bp MQDENDFSDQATLERWRHERLLANDRWQFGLYGKQAVGHWFGIWQEYVATback to top mRNA from alignment at H-paniculata_contig12761:403..6944- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12761.1734.1 ID=mRNA_H-paniculata_contig12761.1734.1|Name=mRNA_H-paniculata_contig12761.1734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6542bp|location=Sequence derived from alignment at H-paniculata_contig12761:403..6944- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12761:403..6944- >mRNA_H-paniculata_contig12761.1734.1 ID=mRNA_H-paniculata_contig12761.1734.1|Name=mRNA_H-paniculata_contig12761.1734.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1824bp|location=Sequence derived from alignment at H-paniculata_contig12761:403..6944- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |