mRNA_H-paniculata_contig1274.1725.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1274.1725.1
Unique NamemRNA_H-paniculata_contig1274.1725.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: A0A6H5JK22_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK22_9PHAE)

HSP 1 Score: 163 bits (412), Expect = 5.240e-44
Identity = 87/114 (76.32%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    4 DAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFDEVTVAEEESGARVLSKV 345
            D   +G FNNGDVYLVMHA                 GGAS G+ R LFYWVGSKASMDKGTVACIKAVELRRALPG CSIRREDEGQESPEFLVLFDEVTVAEEESGARVLSKV
Sbjct:  212 DEVDMGHFNNGDVYLVMHAVHEISGDV---------GGASTGITRTLFYWVGSKASMDKGTVACIKAVELRRALPGPCSIRREDEGQESPEFLVLFDEVTVAEEESGARVLSKV 316
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: D8LCX9_ECTSI (Villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCX9_ECTSI)

HSP 1 Score: 162 bits (409), Expect = 1.410e-43
Identity = 86/114 (75.44%), Postives = 89/114 (78.07%), Query Frame = 1 
Query:    4 DAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFDEVTVAEEESGARVLSKV 345
            D   +G FNNGDVYLVMHA                 GGA+ G+ R LFYWVGSKASMDKGTVACIKAVELRRALPG CSIRREDEGQESPEFLVLFDEVTVAEEESGARVLSKV
Sbjct:  212 DEVDMGHFNNGDVYLVMHAVHEISGDV---------GGAATGITRTLFYWVGSKASMDKGTVACIKAVELRRALPGPCSIRREDEGQESPEFLVLFDEVTVAEEESGARVLSKV 316
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: A0A0R3SVM7_HYMDI (Uncharacterized protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SVM7_HYMDI)

HSP 1 Score: 75.1 bits (183), Expect = 3.810e-13
Identity = 48/131 (36.64%), Postives = 71/131 (54.20%), Query Frame = 1 
Query:    1 DDAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLF--DEVTVAEEESGARVLSKVSEEEGGVTPFHYYG 387
            +D E VG+  +GD Y+++     TE           DGGA+G     +FYW+G+KAS+DK     + AV LR  L      +RE++G ESPEFL LF  +++TV E  SG+     V+ +E  V  +  +G
Sbjct:  129 EDEEYVGQLFSGDCYILLQTREVTEVPT--------DGGATGNREWRVFYWIGAKASLDKRACVAMHAVNLRNLLGIDGQTQREEQGDESPEFLALFPRNKITVLEGSSGSTGFHIVACKEAIVRMYRLFG 251
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: A0A0R3UGY8_MESCO (Uncharacterized protein n=2 Tax=Mesocestoides corti TaxID=53468 RepID=A0A0R3UGY8_MESCO)

HSP 1 Score: 74.3 bits (181), Expect = 7.250e-13
Identity = 47/131 (35.88%), Postives = 72/131 (54.96%), Query Frame = 1 
Query:    1 DDAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFD--EVTVAEEESGARVLSKVSEEEGGVTPFHYYG 387
            +D E VG+  +GD Y+V+    +TE           DGGA+G     +FYW+GS A++DK     + AV LR  L      +RE++G+ES +FL LF+  ++TV E  SG+  L  V+ +E  V  +  +G
Sbjct:  588 EDEEYVGQLYSGDCYIVLQTREATEVPT--------DGGATGNREWRIFYWIGSNATLDKRACVAMHAVNLRNFLGIDGQTQREEQGEESADFLSLFEGHKITVLEGSSGSTGLHIVACKETAVRMYRLFG 710
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: A0A158QIG7_RODNA (Uncharacterized protein n=2 Tax=Hymenolepididae TaxID=6214 RepID=A0A158QIG7_RODNA)

HSP 1 Score: 73.2 bits (178), Expect = 1.840e-12
Identity = 47/131 (35.88%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:    1 DDAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLF--DEVTVAEEESGARVLSKVSEEEGGVTPFHYYG 387
            +D E VG+  +GD Y+++     TE           DGGA+G     +FYW+GSKAS+DK     + AV LR  L      +RE++G ES EFL LF  +++T+ E  SG+     V+ +E  V  +  +G
Sbjct:  590 EDEEYVGQLFSGDCYIILQTREVTEVPR--------DGGATGNREWNVFYWIGSKASLDKRACVAMHAVNLRNLLGIDGQTQREEQGDESQEFLALFPGNKITILEGSSGSTGFHIVACKEAIVRMYRLFG 712
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: W6UNX4_ECHGR (Uncharacterized protein n=1 Tax=Echinococcus granulosus TaxID=6210 RepID=W6UNX4_ECHGR)

HSP 1 Score: 72.0 bits (175), Expect = 4.780e-12
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:    1 DDAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFD--EVTVAEEESGARVLSKVSEEEGGVTPFHYYG 387
            +D E VG+  +GD Y+++     TE           DGGA+G     +FYW+G+KAS+DK     + AV LR  L      +RE++G+ES +FL LF   ++TV E  SG+     V+ +E  V  +  +G
Sbjct: 1853 EDEEYVGQLYSGDCYILLQTREVTEVPK--------DGGATGNREWRIFYWIGAKASLDKRACVAMHAVNLRNFLGIDGQTQREEQGEESSDFLSLFQGHKITVLEGSSGSTGFHIVACKEAAVRMYRLFG 1975
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: A0A158REP0_HYDTA (Uncharacterized protein n=1 Tax=Hydatigena taeniaeformis TaxID=6205 RepID=A0A158REP0_HYDTA)

HSP 1 Score: 70.9 bits (172), Expect = 1.210e-11
Identity = 46/131 (35.11%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:    1 DDAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFD--EVTVAEEESGARVLSKVSEEEGGVTPFHYYG 387
            +D E VG+  +GD Y+++     TE           DGGA+G     +FYW+G+KAS+DK     + AV LR  L      +RE++G+ES +FL LF   ++TV E  SG+     V+ +E  V  +  +G
Sbjct: 1929 EDEEYVGQLYSGDCYILLQTREVTEVPK--------DGGATGSREWRIFYWIGAKASLDKRACVAMHAVNLRNFLGIDGQTQREEQGEESSDFLSLFQGHKITVLEGSSGSTGFHIVACKEAVVRMYRLFG 2051
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: A0A0R3W7Y2_TAEAS (Uncharacterized protein n=3 Tax=Taeniidae TaxID=6208 RepID=A0A0R3W7Y2_TAEAS)

HSP 1 Score: 69.3 bits (168), Expect = 4.070e-11
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 1 
Query:    1 DDAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFD--EVTVAEEESGARVLSKVSEEEGGVTPFHYYG 387
            +D E VG+  +GD Y+++     TE           DGGA+G     +FYW+G+KAS+DK     + AV LR  L      +RE++G+ES +FL LF   ++TV +  SG+     V+ +E  V  +  +G
Sbjct:  570 EDEEYVGQLYSGDCYILLQTREVTEVPK--------DGGATGNREWRIFYWIGAKASLDKRACVAMHAVNLRNFLGIDGQTQREEQGEESSDFLSLFQGHKITVLDGCSGSTGFHIVACKEAAVRMYRLFG 692
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: A0A6V7J0Q9_9HYME (Uncharacterized protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7J0Q9_9HYME)

HSP 1 Score: 67.8 bits (164), Expect = 7.690e-11
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1 
Query:    4 DAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFD-EVTVAE 312
            D  A G+F  GD Y+V+   +                  +GG+I  +++W+G KA++DK   A I AV LR  L   C   RE++G ES EFL+LFD E+T  E
Sbjct:   66 DEVAHGKFYEGDCYIVLKTSLDE----------------AGGLIWAIYFWIGEKATLDKRACAAIHAVNLRNFLGAQCRTIREEQGDESDEFLMLFDSEITYIE 153
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BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Match: A0A835CN58_9HYME (Uncharacterized protein n=1 Tax=Aphidius gifuensis TaxID=684658 RepID=A0A835CN58_9HYME)

HSP 1 Score: 65.5 bits (158), Expect = 8.980e-10
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 1 
Query:    4 DAEAVGRFNNGDVYLVMHAYVSTESSAXXXXXXVGDGGASGGVIRILFYWVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFD 294
            D  A G+F  GD Y+++   +                  SG ++  +++W+G KA++DK   A I AV LR  L   C   RE++G ES +FL+LFD
Sbjct:  542 DEVAHGKFYEGDCYIILKTIIDD----------------SGSLVWSIYFWIGDKATLDKRACAAIHAVNLRNFLGAQCRTIREEQGDESDDFLILFD 622
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1274.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JK22_9PHAE5.240e-4476.32PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D8LCX9_ECTSI1.410e-4375.44Villin n=1 Tax=Ectocarpus siliculosus TaxID=2880 R... [more]
A0A0R3SVM7_HYMDI3.810e-1336.64Uncharacterized protein n=1 Tax=Hymenolepis diminu... [more]
A0A0R3UGY8_MESCO7.250e-1335.88Uncharacterized protein n=2 Tax=Mesocestoides cort... [more]
A0A158QIG7_RODNA1.840e-1235.88Uncharacterized protein n=2 Tax=Hymenolepididae Ta... [more]
W6UNX4_ECHGR4.780e-1235.11Uncharacterized protein n=1 Tax=Echinococcus granu... [more]
A0A158REP0_HYDTA1.210e-1135.11Uncharacterized protein n=1 Tax=Hydatigena taeniae... [more]
A0A0R3W7Y2_TAEAS4.070e-1134.35Uncharacterized protein n=3 Tax=Taeniidae TaxID=62... [more]
A0A6V7J0Q9_9HYME7.690e-1137.50Uncharacterized protein (Fragment) n=1 Tax=Bracon ... [more]
A0A835CN58_9HYME8.980e-1034.02Uncharacterized protein n=1 Tax=Aphidius gifuensis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1274contigH-paniculata_contig1274:1108..1503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue2.2e-37
Seed eggNOG ortholog2880.D8LCX9
Preferred nameFLII
Hectar predicted targeting categoryother localisation
GOsGO:0001703,GO:0003674,GO:0003779,GO:0005488,GO:0005509,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005815,GO:0005829,GO:0005856,GO:0005903,GO:0005912,GO:0005924,GO:0005925,GO:0006996,GO:0007010,GO:0007275,GO:0007369,GO:0007525,GO:0007527,GO:0008092,GO:0008150,GO:0009653,GO:0009790,GO:0009987,GO:0010004,GO:0010927,GO:0015630,GO:0016043,GO:0022607,GO:0030029,GO:0030036,GO:0030054,GO:0030055,GO:0030154,GO:0030239,GO:0031032,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032989,GO:0042692,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048468,GO:0048598,GO:0048646,GO:0048856,GO:0048869,GO:0051014,GO:0051146,GO:0055001,GO:0055002,GO:0061061,GO:0070013,GO:0070161,GO:0070925,GO:0071840,GO:0097435,GO:0098862
EggNOG free text desc.actin filament severing
EggNOG OGsCOG4886@1,KOG0443@1,KOG0443@2759,KOG0444@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.617199-CDS-H-paniculata_contig1274:1107..15031622928996.617199-CDS-H-paniculata_contig1274:1107..1503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1274 1108..1503 -
1691480695.4326932-CDS-H-paniculata_contig1274:1107..15031691480695.4326932-CDS-H-paniculata_contig1274:1107..1503Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1274 1108..1503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1274.1725.1prot_H-paniculata_contig1274.1725.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1274 1108..1503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1274.1725.1

>prot_H-paniculata_contig1274.1725.1 ID=prot_H-paniculata_contig1274.1725.1|Name=mRNA_H-paniculata_contig1274.1725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=132bp
DDAEAVGRFNNGDVYLVMHAYVSTESSAGGGGGTVGDGGASGGVIRILFY
WVGSKASMDKGTVACIKAVELRRALPGACSIRREDEGQESPEFLVLFDEV
TVAEEESGARVLSKVSEEEGGVTPFHYYGGT*
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mRNA from alignment at H-paniculata_contig1274:1108..1503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1274.1725.1 ID=mRNA_H-paniculata_contig1274.1725.1|Name=mRNA_H-paniculata_contig1274.1725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig1274:1108..1503- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGATGCGGAAGCCGTAGGCCGTTTTAACAACGGGGACGTGTACCTAGT
AATGCATGCCTACGTATCAACGGAAAGCTCGGCCGGCGGGGGCGGGGGTA
CGGTAGGCGACGGGGGTGCCTCTGGCGGCGTGATTCGCATTCTCTTTTAC
TGGGTAGGCTCGAAAGCTTCCATGGACAAGGGCACCGTGGCGTGCATCAA
AGCCGTGGAGTTGAGGCGGGCGCTGCCAGGGGCTTGTTCCATTCGACGGG
AGGACGAAGGCCAAGAGAGCCCTGAGTTTTTGGTGCTATTTGATGAGGTT
ACGGTGGCGGAGGAGGAGTCTGGCGCTAGAGTGCTTAGCAAGGTGAGCGA
AGAGGAAGGGGGGGTTACTCCATTTCACTATTACGGAGGAACATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1274:1108..1503-

>mRNA_H-paniculata_contig1274.1725.1 ID=mRNA_H-paniculata_contig1274.1725.1|Name=mRNA_H-paniculata_contig1274.1725.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=792bp|location=Sequence derived from alignment at H-paniculata_contig1274:1108..1503- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACGATGCGGAAGCCGTAGGCCGTTTTAACAACGGGGACGTGTACCTAGT
AATGCATGCCTACGTATCAACGGAAAGCTCGGCCGGCGGGGGCGGGGGTA
CGGTAGGCGACGGGGGTGCCTCTGGCGGCGTGATTCGCATTCTCTTTTAC
TGGGTAGGCTCGAAAGCTTCCATGGACAAGGGCACCGTGGCGTGCATCAA
AGCCGTGGAGTTGAGGCGGGCGCTGCCAGGGGCTTGTTCCATTCGACGGG
AGGACGAAGGCCAAGAGAGCCCTGAGTTTTTGGTGCTATTTGATGAGGTT
ACGGTGGCGGAGGAGGAGTCTGGCGCTAGAGTGCTTAGCAAGGTGAGCGA
AGAGGAAGGGGGGGTTACTCCATTTCACTATTACGGAGGAACATAAGACG
ATGCGGAAGCCGTAGGCCGTTTTAACAACGGGGACGTGTACCTAGTAATG
CATGCCTACGTATCAACGGAAAGCTCGGCCGGCGGGGGCGGGGGTACGGT
AGGCGACGGGGGTGCCTCTGGCGGCGTGATTCGCATTCTCTTTTACTGGG
TAGGCTCGAAAGCTTCCATGGACAAGGGCACCGTGGCGTGCATCAAAGCC
GTGGAGTTGAGGCGGGCGCTGCCAGGGGCTTGTTCCATTCGACGGGAGGA
CGAAGGCCAAGAGAGCCCTGAGTTTTTGGTGCTATTTGATGAGGTTACGG
TGGCGGAGGAGGAGTCTGGCGCTAGAGTGCTTAGCAAGGTGAGCGAAGAG
GAAGGGGGGGTTACTCCATTTCACTATTACGGAGGAACATAA
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