mRNA_H-paniculata_contig12730.1720.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12730.1720.1
Unique NamemRNA_H-paniculata_contig12730.1720.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: D8LMF3_ECTSI (DUF676 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF3_ECTSI)

HSP 1 Score: 350 bits (897), Expect = 7.130e-103
Identity = 166/221 (75.11%), Postives = 196/221 (88.69%), Query Frame = 1 
Query:    1 YRFLMIRAPSVLIPGGQGRLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRDARRGVAHGQIVCDMAQSVLGPISDETLYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDSPSLVCLLLCTLLDLIR 663
            +RFL++RA S+L+PGGQGRLSF+ HSAGA+I+R+AL+S  L+PAL  LH+FVSLGSPHLGT+YGASG+VRTGMWAMKRWTKS LLEE+G+TDA  PRD+LLCWLS+QPGLEYFRHVVLVSADKDGYVP QSAR+QMCDA++RDA+R V HGQ+VC+MA+++L PI+D++LYRLHLWGG           MDEYIGR AHISMMDSPSLVCLLLCTLLDLIR
Sbjct: 1370 HRFLLVRARSLLLPGGQGRLSFIGHSAGAVIIRVALSSPSLQPALGRLHMFVSLGSPHLGTVYGASGIVRTGMWAMKRWTKSALLEELGLTDAPRPRDTLLCWLSQQPGLEYFRHVVLVSADKDGYVPSQSARIQMCDASLRDAKREVPHGQVVCEMARALLEPINDDSLYRLHLWGGERQPNAGGGG-MDEYIGRTAHISMMDSPSLVCLLLCTLLDLIR 1589
[Close]
BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: A0A6H5JT64_9PHAE (DUF676 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT64_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 1.160e-99
Identity = 165/224 (73.66%), Postives = 194/224 (86.61%), Query Frame = 1 
Query:    1 YRFLMIRAPSVLIPGGQGRLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRDARRGVAHGQ---IVCDMAQSVLGPISDETLYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDSPSLVCLLLCTLLDLIR 663
            +RFL++RA S+L+PGGQGRLSF+ HSAGA+I+R+ALTS  L+PAL  LH+FVSLGSPHLGT+YGASG+VRTGMWAMKRWTKS LLEE+ +TDA  PRD+LLCWLS+QPGLEYFRHVVLVSADKDGYVP QSAR+QMCDA++RDA+R V HGQ   +VC+MA+++L PI+DE+LYRLHLWGG           +DEYIGR AHISMMDSPSLVCLLLCTLLD IR
Sbjct: 1402 HRFLLVRARSLLLPGGQGRLSFIGHSAGAVIIRVALTSPSLQPALGRLHMFVSLGSPHLGTVYGASGIVRTGMWAMKRWTKSALLEELSLTDAPRPRDTLLCWLSQQPGLEYFRHVVLVSADKDGYVPSQSARIQMCDASLRDAKREVPHGQAKGVVCEMARALLEPINDESLYRLHLWGGERQPNAGGGG-VDEYIGRTAHISMMDSPSLVCLLLCTLLDRIR 1624
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BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: A0A6V1VCI1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1VCI1_HETAK)

HSP 1 Score: 167 bits (422), Expect = 5.240e-44
Identity = 94/223 (42.15%), Postives = 140/223 (62.78%), Query Frame = 1 
Query:    7 FLMIRAPSVLIPGG-QGRLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRDARRGVAHGQIVCDMAQSVLGPISDETLYRL---HLWGGXXXXXXXXXXXMDEYIGRAAHISMMDSPSLVCLLLCTLLDLIR 663
            F++ +AP +  P   +GRLSF+ +S G++++R AL S+ L   L  LH F+SL SPHLG  Y ASGL++TGMWA++ + K ++LEE+ + DA HP ++ L  LS+ PGL  FRHV LVSA +D YVP  SARVQ+C    R+A     HG  V DMA +++  ++   +  L   H++ G           ++  IGRAAH+S ++SP ++ LLL T  D+++
Sbjct:   62 FVLDKAPFMGHPTRPRGRLSFVGYSMGSLVIRAALASRALSLFLPRLHAFLSLSSPHLGCPYSASGLIKTGMWALRTFMKVRVLEELELKDAEHPTETTLYKLSQTPGLGLFRHVALVSAHRDKYVPAYSARVQVC----REAGADFVHGPAVIDMAANLMSEVAPGAVAHLDLDHVFEGLS---------VNTVIGRAAHLSYLNSPQVINLLLFTFYDMLK 271
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BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: A0A7S1U7I9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7I9_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.600e-35
Identity = 83/219 (37.90%), Postives = 133/219 (60.73%), Query Frame = 1 
Query:    4 RFLMIRAPSVLIPGGQGRLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRDARRGVAHGQIVCDMAQSVLGPISDETLYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDSPSLVCLLLCTLLDLI 660
            + L+ +AP  L   G GRLSF+ HS G++++R ALT+ +LR  L  LH ++SL SPHLG ++  S LV++G+WA+ +  ++ +L E+ +TD  +   + L  LS+  GLE+F+HVVLVS+ +D YVP  SAR+Q+C+ A   + R    G ++  MA +++ P    ++ R+ L              +D  IGR+AHI  +D+P LV  L+ T L ++
Sbjct:  198 KILLEKAPW-LASTGTGRLSFIGHSLGSLVIRSALTNPLLRLFLPRLHCYISLSSPHLGQMFSRSQLVQSGIWALTKLRRADVLTELKLTDKRNREKTTLFELSKAGGLEHFKHVVLVSSHQDEYVPLHSARIQICEEAESASER--EGGPLLIRMAANLIAPCRSSSIIRICLQADFNEGKKSS---LDNLIGRSAHIMYLDNPELVQFLMFTCLPVL 410
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BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: A0A2G9S3X4_LITCT (DUF676 domain-containing protein (Fragment) n=3 Tax=Neobatrachia TaxID=8416 RepID=A0A2G9S3X4_LITCT)

HSP 1 Score: 140 bits (354), Expect = 1.910e-34
Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 1 
Query:   55 RLSFLAHSAGAIIVRIALTSKVLRPALKC----LHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRDARRGVAHGQIVCDMAQSVLGPI---SDETLYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDS 615
            R+SF+ HS G +I+R    S + RP  KC    LH F+SL  PHLGTLY +S LV TG+W M++W KS  L ++   D S PR + L  LS++PGLE+FR+VVLVS+ +D YVP  SAR++MC  A++D + G     +  +M Q++L P+   +D  L R  +               +  IGRAAHI+++DS
Sbjct:   68 RISFIGHSLGNLIIR----SVISRPRFKCYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQKWKKSGSLLQLTCRDHSDPRQTFLYKLSKKPGLEHFRNVVLVSSLQDRYVPYHSARIEMCKTALKDKQSG----PVYAEMIQNILLPVLQNNDCNLVRYDV-------IHALPNTANSLIGRAAHIAVLDS 246
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BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: A0A183TCM5_SCHSO (DUF676 domain-containing protein n=1 Tax=Schistocephalus solidus TaxID=70667 RepID=A0A183TCM5_SCHSO)

HSP 1 Score: 137 bits (345), Expect = 6.750e-34
Identity = 75/196 (38.27%), Postives = 119/196 (60.71%), Query Frame = 1 
Query:   58 LSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRD-ARRGVAHGQIVCDMAQSVLGPISDETLYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDSPSLVCLLLC 642
            + F+ HS G +++R AL    + P L  LH F+SL  PHLGT+YG SGLV  GMWA+++  KS+ L ++ + D + PR++ +  LS  PGL  FR+V+LVS+ +D YVP  SAR+++C AAI+D +  G+ + ++V ++ Q ++   S  T+ R  +               + +IGRAAHI+++DS  L+    C
Sbjct:    1 MGFIGHSLGCVLIRAALAHPRMEPLLPLLHTFLSLCGPHLGTVYGTSGLVNMGMWALQKLKKSESLLQLRLRDHTDPRETYIYKLSSSPGLGSFRYVLLVSSPQDHYVPHHSARIELCKAAIQDNSEFGIIYMEMVANLLQRLIKE-SRTTVVRYDI-------HHNFPISANNFIGRAAHIAVLDSKVLLEKFFC 188
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BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: UPI001E1E05D4 (protein FAM135B-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1E05D4)

HSP 1 Score: 147 bits (370), Expect = 2.030e-33
Identity = 83/200 (41.50%), Postives = 120/200 (60.00%), Query Frame = 1 
Query:   55 RLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRDARRGVAHGQIVCDMAQSVLGPISDETLYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDSPSLV--CLLLCTL 648
            +LSF+ HS G II+R ALT+  + P L  L+ F+SL  PHLGTLY  SGLV  GMW M++W KS  L ++ + D   PR S L  LS++PGLE+FRHV+LV + +D YVP  S+R++MC AA R++      G +  +M  ++L PI +    +L  +              +  IGRAAHI+++DS   +   L++C L
Sbjct: 1101 KLSFIGHSLGTIIIRSALTNVEMIPLLPKLYTFLSLSGPHLGTLYNNSGLVNMGMWFMQKWKKSGSLLQLSLKDGVDPRQSFLFKLSQKPGLEFFRHVLLVGSSQDRYVPYHSSRIEMCKAAQRESS---GLGSVYAEMVANILQPIVNNPKCKLIRYD----VFHALPSTANTIIGRAAHIAVLDSEIFIEKFLMVCGL 1293
[Close]
BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: A7RLZ6_NEMVE (Predicted protein (Fragment) n=2 Tax=Nematostella vectensis TaxID=45351 RepID=A7RLZ6_NEMVE)

HSP 1 Score: 138 bits (347), Expect = 2.070e-33
Identity = 80/207 (38.65%), Postives = 121/207 (58.45%), Query Frame = 1 
Query:   55 RLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRDARRGVAHGQIVCDMAQSVLGPISDET---LYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDSPSLV-CLLLCTLLDLIR 663
            +LSF+ HS G II+R ALT   +R      H  +SL  PHLG LY  S LV TG+W M++W KS  L+++ + D +  R + L  LS+  GLEYF++++LVS+ +D YVP  SAR++MC AA +D+      G I  +M  +++ P+  +T   L R  ++ G            + +IGRAAHI+M+DS   +  +LL + +D  R
Sbjct:   72 KLSFIGHSLGNIIIRSALTHPDMRLFAGKFHTLLSLSGPHLGMLYPTSPLVSTGLWLMQKWKKSDALQQLSLHDHTDLRQTFLYKLSKSSGLEYFKNILLVSSTQDHYVPYHSARMEMCRAAAKDSSE---FGTIYREMVTNLMAPLKSKTGSTLVRYSVYHGLPSSA-------NSFIGRAAHIAMLDSELFIEKMLLVSAMDYFR 268
[Close]
BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: A0A182PP44_9DIPT (DUF676 domain-containing protein n=1 Tax=Anopheles epiroticus TaxID=199890 RepID=A0A182PP44_9DIPT)

HSP 1 Score: 144 bits (362), Expect = 2.290e-32
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = 1 
Query:   55 RLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRD-ARRGVAHGQIVCDMAQSVLGPISDETLYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDS 615
            R+SF+AHS G IIVR AL    +RP L  LH F+SL  PHLGTLY +SGLV  GMW M++W KS  L ++ + DA+ PR S L  LS++  L +F++V+L  + +D YVPP SAR+++C AA+RD +  G+ + ++V ++   +L    D TL R  +               +  IGRAAHI+++DS
Sbjct: 1384 RISFVAHSLGTIIVRSALARPQMRPLLSRLHTFLSLSGPHLGTLYNSSGLVNMGMWFMQKWKKSGSLLQLCLRDAADPRQSFLYRLSQRSTLHHFKNVLLCGSSQDRYVPPHSARLELCKAAVRDQSNLGIVYREMVHNIIAPMLAR-QDLTLARFDV-------HHALPHTANALIGRAAHIAVLDS 1563
[Close]
BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Match: A0A182U356_9DIPT (DUF676 domain-containing protein n=2 Tax=gambiae species complex TaxID=44542 RepID=A0A182U356_9DIPT)

HSP 1 Score: 144 bits (362), Expect = 2.300e-32
Identity = 81/188 (43.09%), Postives = 117/188 (62.23%), Query Frame = 1 
Query:   55 RLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSLGSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWLSRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRD-ARRGVAHGQIVCDMAQSVLGPISDETLYRLHLWGGXXXXXXXXXXXMDEYIGRAAHISMMDS 615
            R+SF+AHS G IIVR AL    +RP L  LH F+SL  PHLGTLY +SGLV  GMW M++W KS  L ++ + DA+ PR S L  LS++  L +F++V+L  + +D YVPP SAR+++C AA+RD +  G+ + ++V ++   +L    D TL R  +               +  IGRAAHI+++DS
Sbjct: 1396 RISFVAHSLGTIIVRSALARPQMRPLLSRLHTFLSLSGPHLGTLYNSSGLVNMGMWFMQKWKKSGSLLQLCLRDAADPRQSFLYRLSQRSTLHHFKNVLLCGSSQDRYVPPHSARLELCKAAVRDQSNLGIVYREMVHNIIAPMLAR-QDLTLARFDV-------HHALPHTANALIGRAAHIAVLDS 1575
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12730.1720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF3_ECTSI7.130e-10375.11DUF676 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JT64_9PHAE1.160e-9973.66DUF676 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6V1VCI1_HETAK5.240e-4442.15Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U7I9_9STRA1.600e-3537.90Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A2G9S3X4_LITCT1.910e-3442.27DUF676 domain-containing protein (Fragment) n=3 Ta... [more]
A0A183TCM5_SCHSO6.750e-3438.27DUF676 domain-containing protein n=1 Tax=Schistoce... [more]
UPI001E1E05D42.030e-3341.50protein FAM135B-like n=1 Tax=Mercenaria mercenaria... [more]
A7RLZ6_NEMVE2.070e-3338.65Predicted protein (Fragment) n=2 Tax=Nematostella ... [more]
A0A182PP44_9DIPT2.290e-3243.09DUF676 domain-containing protein n=1 Tax=Anopheles... [more]
A0A182U356_9DIPT2.300e-3243.09DUF676 domain-containing protein n=2 Tax=gambiae s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12730contigH-paniculata_contig12730:885..7417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score341.7
Seed ortholog evalue2.6e-91
Seed eggNOG ortholog2880.D8LMF3
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.carboxylic ester hydrolase activity
EggNOG OGsKOG2205@1,KOG2205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size1694
Cds size654
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.0339403-UTR-H-paniculata_contig12730:884..19121622928996.0339403-UTR-H-paniculata_contig12730:884..1912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12730 885..1912 -
1691480695.21268-UTR-H-paniculata_contig12730:884..19121691480695.21268-UTR-H-paniculata_contig12730:884..1912Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12730 885..1912 -
1622928996.170775-UTR-H-paniculata_contig12730:7405..74171622928996.170775-UTR-H-paniculata_contig12730:7405..7417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12730 7406..7417 -
1691480695.2777512-UTR-H-paniculata_contig12730:7405..74171691480695.2777512-UTR-H-paniculata_contig12730:7405..7417Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12730 7406..7417 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.0501769-CDS-H-paniculata_contig12730:1912..19811622928996.0501769-CDS-H-paniculata_contig12730:1912..1981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 1913..1981 -
1691480695.222208-CDS-H-paniculata_contig12730:1912..19811691480695.222208-CDS-H-paniculata_contig12730:1912..1981Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 1913..1981 -
1622928996.0702388-CDS-H-paniculata_contig12730:3061..32021622928996.0702388-CDS-H-paniculata_contig12730:3061..3202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 3062..3202 -
1691480695.22993-CDS-H-paniculata_contig12730:3061..32021691480695.22993-CDS-H-paniculata_contig12730:3061..3202Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 3062..3202 -
1622928996.117426-CDS-H-paniculata_contig12730:4000..41151622928996.117426-CDS-H-paniculata_contig12730:4000..4115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 4001..4115 -
1691480695.243097-CDS-H-paniculata_contig12730:4000..41151691480695.243097-CDS-H-paniculata_contig12730:4000..4115Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 4001..4115 -
1622928996.1335464-CDS-H-paniculata_contig12730:5726..58341622928996.1335464-CDS-H-paniculata_contig12730:5726..5834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 5727..5834 -
1691480695.2547462-CDS-H-paniculata_contig12730:5726..58341691480695.2547462-CDS-H-paniculata_contig12730:5726..5834Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 5727..5834 -
1622928996.1510308-CDS-H-paniculata_contig12730:7184..74051622928996.1510308-CDS-H-paniculata_contig12730:7184..7405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 7185..7405 -
1691480695.2699866-CDS-H-paniculata_contig12730:7184..74051691480695.2699866-CDS-H-paniculata_contig12730:7184..7405Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12730 7185..7405 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12730.1720.1prot_H-paniculata_contig12730.1720.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12730 1913..7405 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12730.1720.1

>prot_H-paniculata_contig12730.1720.1 ID=prot_H-paniculata_contig12730.1720.1|Name=mRNA_H-paniculata_contig12730.1720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MIRAPSVLIPGGQGRLSFLAHSAGAIIVRIALTSKVLRPALKCLHLFVSL
GSPHLGTLYGASGLVRTGMWAMKRWTKSQLLEEIGMTDASHPRDSLLCWL
SRQPGLEYFRHVVLVSADKDGYVPPQSARVQMCDAAIRDARRGVAHGQIV
CDMAQSVLGPISDETLYRLHLWGGGRQAAGGGGGGMDEYIGRAAHISMMD
SPSLVCLLLCTLLDLIR*
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mRNA from alignment at H-paniculata_contig12730:885..7417-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12730.1720.1 ID=mRNA_H-paniculata_contig12730.1720.1|Name=mRNA_H-paniculata_contig12730.1720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6533bp|location=Sequence derived from alignment at H-paniculata_contig12730:885..7417- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TACAGGTTTCTAATGATACGTGCACCAAGCGTCCTAATACCTGGGGGCCA
GGGTCGGCTGTCGTTCCTGGCGCACAGTGCCGGGGCGATAATTGTGAGAA
TTGCGCTCACTTCGAAGGTCTTGCGTCCGGCTTTGAAATGTCTGCATCTC
TTCGTATCGCTGGGCTCTCCCCACCTCGGCACCCTGTACGGGGCGAGTGG
GCTTGTTAGGACCGGCATGTGGGCCATGAAGAGGTGAAAATAATTGCTGA
TTTTTTTTTTTCTTTGGGGGGGTGGGGTGTTGCAGTTGTGAAGTATAACT
CTAAACCTCATATAATAACTCCATTGTAAAGTACCCATATTGAGGTTATG
TAGCTGATTTTAAAGCTACGCTTATGTAATGACACTTATCAGCAAAAATT
AATCAAGAAGGGGAAGCGGTAGGTATAGACATGTCTCGCTGAGGCTATGT
TTGGGACGTGTGCCAGGTTTTTTTGTTTTTCTTTTTGGGGTGCTTCTTTG
TTATCTGTGTTGTCTGCGATGTAAGTCTTTGTCTTTTTTTTGTTGTGATG
TGTCAGCAAGCATTGCCATCAGACAAAGAGATGAGGGCGTTGGTGCGCGT
GGGGATGTAAGTGAATGTTATGACTCGAAGAAGTGGTTTTTATCTAGACT
TCCTTCTCTCTTAGAGATACAGGCGAGCAGTGGGCTGTCGTATGTAACGT
GGCGAGAGAGGTTATGGAATCGCATACGTTGCGAGAAGTGCTCTGTCCTG
CTTCGGGTGATGTCTCGCCGATGCACTGGGGGTTTCATGACTTGGATACT
AACTCCTCTGGTCTATGACTGGATAATGACACCTTTGGTCTATGACTGGA
TAATGACACCTCTGGTCTATGACTGGATAATGACATCTACCAACCATGAC
TGGATAATGACACCTCCGAACTATGAGAAGGTCTCCTGGTCTGTAGATGG
ATACATCGGGAAGTGCACACTGTGTTGTCAGTAGTGGCAAAGATCGAATT
AATTTCGCTCAAAAGTGCTACTACTATTCTAGTGGTTGGCCCGCGGTGTA
TACCCGTGCCGATAATCGATCAATCAATCAAATCCCAGTTTTTTTTTTCG
CCATACAGCCATGATCTATGTGCAGTGCACAGACCATTACGTCATGCCCC
ATGTATTCGACCTAGGATCCTACGGTAGTGTTTTTTTTGCCAGGCAAAAA
GTGTCATATTATGTAGTGAACCCGTAACCTGAGAGAAGATTTATGATGAT
GATGATGATGATCAATTATTATGTCCTGAAGTATGGCCGTAAGAGGATAC
ATGCAGCCTTTTTCAATACCTGTCGAATCGAATCGACAGCTAAGAAGGAT
ACGTGACGAATGAGTCACACACCTTCGACGAGTATTCGACGTTAAAGAGT
GTGGCTGAAATGGCAAAGCAAGCGCCTCGACGTTTGTTTGTTTTTTAGCA
CGATGAAGGTCGATGAAGTTTTGGCTGAAGGTTGTAAGGTTACGTGATGG
ACAACCTTGCACCCCGGATCTACCAACGCCTTTTTGTGGATTGACCGCGA
TTTGAAGTGCCACCGATTGTTCTGCATCACTAGGTGGACCAAGAGTCAAC
TGTTGGAAGAGATAGGCATGACCGACGCATCTCACCCTAGGGACTCTCTT
CTTTGCTGGCTTAGCCGTCAGCCAGGGTTGGAGTACTTCAGGTAAGGAAT
GCTATCAGCCCTCTTTTATGTCTTAACTATGACCTTGTTTGCTGTTTCAC
TAGGACGATTGGCTTTCTGAGGGCAGTATATTTGACAGCGTGTTGAGTAT
TTGCGCAGAATGGATTTCCGTTTTTTTCTGAATTCCGGTTTTGATCCTGT
GTCAATGGTTGACCCGAATTTAGTCGTCTGTTTATTTTTGGATGGTGAAC
GAACGAGCCTTCAAGAGTTGAGGATCTTCGGTGACCTACGCAAAGTCAAT
CTGCAGGAGTAATTCGTATTAGAAAAATAGATGGAGTGTCTCCCCCTCGC
ACTCCATTTAAAAAAAAATTATTATTGAAATCCTTTTGTAGCTTGACTTT
GTGCAGGTAGCTGAGACCCTCAACTCGTGAAGGCTCGCTCACAGCCCACA
AATGCACCGATAAGTATAAACGGGTTAATCAGTGACTGACTGTCCAGGGG
AAGTGAAATGGTGCAGGATCAAAAGGGGAAAATTGGAAGAAAATCTCTTC
GTGTTTTGCTCTTGAGACTAAATTCATGGAAGAGAAGAAAGTCAACAGGA
AACGTTCAATTTTGCTTCTGCCCTCTTTAATCGGTTAATGGGAAGACGAT
GTGGCCCAGGGTGAGATCTTATGCCCATTGGCGTTTTGATTGATTGTTTG
TTGGTTTGTTTTTTGCGCTTTTTTTTACTGAGTGCAACGCAGGTGAAGTG
AGATATCGAGGATAGCTGCACAGCCGTAGCATAGCCACGATAGAGATATC
ATGTTGAGCGTCATAGATCTACCAGCTGTGGCAAGTAGGTCGGATGAATC
GGGACTGAGATGGTCCACCCCCGTCCGTTTTTTTTGTTTTTTTTTCAGTT
TGTGGATAATAACCAATTAATCTGGCAGCTTGAACATACTTAGCATACCT
TCAATTTGCGTTACGGATATTGTCATATTTTTTTGATAGTGCAGTAATAT
GTGCAACTCTAGTTGCACTTTTGATTTGCTCTTTATTTTATGGCACTTTT
TTTCAAACCGTATTTTCGTCGTGAAAATGCCGTCTTGCTGGTGAAGGTAT
CCACTGTTATTGACCCCTGTGGTGATGTCGTTATGTAGTAATTGGTCGTG
AAGTTCTTGTTTCCTGAGTGGAGTGTATTTCCAGCTGTCTTATAATAACT
GCTGTGTATGTATATATCATCATTCTGGAATATCTCACACAGATCAAGAT
CAATCCAATTCACTTGTCCACCTGCATGCAGCGCTAGCGGGAGCGGGAGC
GGGAGCAATCACTTGTCCATGTGTAGCACTCCTGGCCAAGCGGACACTAA
TATGTGATACTAGCGTCGGCTTGCACGAAAGCTAGCAAGTCTACACTTGT
GATTTTGTTTTTAACGTTATGGAGTGATGATACACATGAACAAGACTGCG
TTTATGGCCCCATCTTGATCTCGTGCCAGTCATCTTGCTTCGCAATTTGA
ATCTTTGTGTGTGTGTGTTCTCGCCTGTCGAATATTTATCAGAAAGGAAC
GAACATACGTGGATAGCTGTTGTTTGTTCTTTGGAATTTGATTAGTTTCT
CCCCGCCCGCCCGCGTTTCCCCCTGCCCCGCTTGTTGGGTGCCGTAATCT
AGGCATGTAGTATTGGTCTCGGCCGATAAAGACGGGTATGTCCCGCCGCA
GTCGGCTCGAGTCCAGATGTGCGATGCTGCGATCAGGGATGCTCGCCGGG
GTGTGGCACACGGGCAGGTAACAGCTGTCGCATCGTTCTCCTGCGGCTTT
TTGCGTCCCCGTTTTACCTTTTACAGTAGCTCGTTTTTCGACTCATGGAC
ATGCAAATTGCAAGTAAGTCAGCTATAATACATGCCCGCAGTCAGCACAA
GGGTCGGGCATTGTTGTTCTATGTTCGTTTGTTTCCTTTTCCAGCAAGGA
TCAACGAATGAGAGGACTCCACACAATGCGTTGCTACTGGAGATGGGTGC
TTTTTGTACCTCCCCCCCCCCTCCCTAGGTTGTAGGAGGTAAAAATTGGC
CTAAACAAGTGACGTTTGAGGTAGATACGGTAGATGAAACCTTTGTAAGG
CACATTTGTCAAGGTAGAAAAGAGCGATTGCCCATGGGAAGTTGCTCTGA
TAGGATCAAAGCTCTATCCTCACAAGGACGCTTGGTCGAATGCCTAACAA
ATACGGCATGTAAATATGAGGACTCCCCCACCCCCCTAGGCGACCAACCC
TCTATCCTCTGTTTCTTTTTGTGGTTGACCAGTATGGCTCAACTGCTGTT
GTACTTGTCATCTGTTCCCCGTTTTTTCGACGTTGGTTTGACACAAAGTA
TGTGTCAACGTAGAACAGAGGGAGATGAGTTGGAGCTTTAGAGCAAACGC
ATCACAACGAGATCTTTCGTAAGGGATGCCAGCTGAGCTTTCGTTCTGTT
GATTGAAATTGACCCCGTTTATTATGTTGTCAGTTGTCAATTACGTATAC
ACGACTGGACTGCATTTTATATATATTTTTTATCGTGCATGTTTTTTCGC
GTGGCTCTACGGCAGATTGTGTGTGATATGGCACAGTCAGTTCTGGGCCC
AATCAGCGACGAGACTCTGTACCGCTTGCATCTGTGGGGGGGAGGCAGGC
AAGCCGCCGGAGGGGGAGGCGGCGGCATGGATGAGTACATCGGTCGAGCG
GCACATGTGAGGAGATCAAGGGCGATATGTCTTGTGTCGTTTGAGGCTTG
CGGGCATTTGAGAGATTACTGCCTGCAGGGGAAATGTCAGGCATTTTGAG
CAGATTAGGCATGCAGGGTAGATTGATCGTACAGGGCAGGCCATCATGCA
GTGCAGGGTGGGCATGCACGGTCGGGAGGGCGTGCGGGGTAGACGCGTTT
CAGTAGAAAATAATATTGGCTGCTCTTCTCTTTCATAACGACATTTTTCG
CGATATGCCGTGGACTAAATGGCTAAGCGCACGTGAGGGCTGGGTCATGC
GTATGTCTAGTTTCAAGACGCGGTGGCGTCGGCAGTGGAGGTAGTTGAAA
AAACATCTTGTTTGTTTTTGTTCCGGCAACGATTTTGTCGTGAAGCACCT
AAAGTACTTTGGGCTTGACTTGCTGTACGTGTACGGAAGATGTGATGACG
TTATGCTCCACGAGCAACTGCCACCGTAGCTCCGCTTGTAATCGCTTTGG
GTTACTGTGTGCTTTGTCGATATATACAGGAACAAAATAACGATTGTTTT
TTTCCCAGCCCCCAAATTAATTTAGATGGATCGATCATGTTGGGGTGTGC
TTGGGCACATCAATTAATAGCGATTCATGAGCAGTTTTCACGACACGCTA
AAGCTACTATTTTATTTTTAGTGTCGCGGTTTGTGGTTTTTGTAATTTGT
CGGCCACCCGAGACGCGAAACACTAGTAGTGCTTTTGAATCCTGGCGAAC
GCTGGTACTCACTGTTGTTTGCGTCGGTGCTGTCCCATCGTTGGACTCCT
CTCGAGGCACACAGAATTGTCTTCCCGTTCTGCTCTCTTTTTGTTCTTTT
TGTTCTTTTTGTTCTTTTTGTTCTTTTTGTTGTTTGAGTTGTCTAACTGA
CAAACCCATTGCGTATACCTGCCACAATGTTTTGTGTCGAAGCCGCTCCT
GCTTTCCACTGTTTATAATGTAGATATCCTTGAAGGTGATGTGCTCTGTT
TCGATCTGCTCTGTTTCGATCTGCTCCGTCTTCCCTCACCCACCCGACCG
TCTCATCTCGCCTCACCCCGTCTCTCGCCCTATCAGATATCGATGATGGA
CTCGCCTAGTTTGGTGTGTCTGCTTCTATGTACTCTACTGGACCTCATCC
GCTGATGAGTAGAATGCTCGTCTCTGCGGGGCTAATCTAAGCCAGTACAC
ACTGTTTACTTCCATGTATACCGCGTACTGCGGTAGTAGTATCGATCGTG
GGAATTGTTTTGACCTCGTGTTTTTTTATCGAACCACTCCGATGTGGATT
TTTTTTTTTAATATTTATGACAATCCACGAGTATCCGGGGGGGAATATGT
GTTGCTGAGAGAGGGTATGTTGAACTCGCCGCATTTATGAAAAACCTCCT
TGACCGCCTTTTGCGCCTCCCGCGTGGTTTTGCTTTTTAAGATTCAGACG
TTGTGATTTTTTTTTTTTTTTCCTCACCGGTGTGGTGTGGGTGGTGCAAG
GAGGGCGCGATTACGTCCTGCTGTTGGTTGTGGGCAAAGGGTTGCCGGGA
GAACGTTGAGGGGGGACGTGACTTGCGTGCTATTATTCGTTGGTATTTTT
CTGATGGTGCTCGTTTTTTTAATTTTCTGGCTGGTGCAGTGTGCGCCTCT
TTGAACAGACACGGTCTTCTATCACCATTCATACGCGAGAGGTTTGCGAT
ATTGGTGTTTATAGATGCATGCTACAGTAGGTGTACTTGATAATCTTCTC
TTTGTGTCGTTGTTGGCCCCACGTTTTTCTGGGATTGCGGGTGAACAGGG
TTGAGGTGTCATTCATAGCGTGTAGGTGGTGCTGCCGAAGGAGGGTTTCG
GTTGTCTGTGTGCTATGATTGCTCGATACAGTTTTAATTTTTGGCAAGAA
ACGAAAAGTTCATCCTTAGCGGTTGTTGAGCTATCATATAATTATAGATT
TCTCTACGCTGAGGATGGGTCTTGTATAGCATATTTGCTTTACTCTGCTG
CCGAATCATCTCTCGCAATTTTTCCAGTACCCACGATCTCTGAATCCATG
ATATATATATACCACCTCTGTCCCGTTAGTCTGGCTTATAACGGTATTTT
GTAAAATACCTTCTGCAATTGTGGCCTTTCGTGAAATATAAAGCATATCA
TTCGAAAGCTTACATGTTCAGCTTGAATGTAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12730:885..7417-

>mRNA_H-paniculata_contig12730.1720.1 ID=mRNA_H-paniculata_contig12730.1720.1|Name=mRNA_H-paniculata_contig12730.1720.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig12730:885..7417- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATACGTGCACCAAGCGTCCTAATACCTGGGGGCCAGGGTCGGCTGTC
GTTCCTGGCGCACAGTGCCGGGGCGATAATTGTGAGAATTGCGCTCACTT
CGAAGGTCTTGCGTCCGGCTTTGAAATGTCTGCATCTCTTCGTATCGCTG
GGCTCTCCCCACCTCGGCACCCTGTACGGGGCGAGTGGGCTTGTTAGGAC
CGGCATGTGGGCCATGAAGAGATGATACGTGCACCAAGCGTCCTAATACC
TGGGGGCCAGGGTCGGCTGTCGTTCCTGGCGCACAGTGCCGGGGCGATAA
TTGTGAGAATTGCGCTCACTTCGAAGGTCTTGCGTCCGGCTTTGAAATGT
CTGCATCTCTTCGTATCGCTGGGCTCTCCCCACCTCGGCACCCTGTACGG
GGCGAGTGGGCTTGTTAGGACCGGCATGTGGGCCATGAAGAGGTGGACCA
AGAGTCAACTGTTGGAAGAGATAGGCATGACCGACGCATCTCACCCTAGG
GACTCTCTTCTTTGCTGGCTTAGCCGTCAGCCAGGGTTGGAGTACTTCAG
GTGGACCAAGAGTCAACTGTTGGAAGAGATAGGCATGACCGACGCATCTC
ACCCTAGGGACTCTCTTCTTTGCTGGCTTAGCCGTCAGCCAGGGTTGGAG
TACTTCAGGCATGTAGTATTGGTCTCGGCCGATAAAGACGGGTATGTCCC
GCCGCAGTCGGCTCGAGTCCAGATGTGCGATGCTGCGATCAGGGATGCTC
GCCGGGGTGTGGCACACGGGCAGGCATGTAGTATTGGTCTCGGCCGATAA
AGACGGGTATGTCCCGCCGCAGTCGGCTCGAGTCCAGATGTGCGATGCTG
CGATCAGGGATGCTCGCCGGGGTGTGGCACACGGGCAGATTGTGTGTGAT
ATGGCACAGTCAGTTCTGGGCCCAATCAGCGACGAGACTCTGTACCGCTT
GCATCTGTGGGGGGGAGGCAGGCAAGCCGCCGGAGGGGGAGGCGGCGGCA
TGGATGAGTACATCGGTCGAGCGGCACATATTGTGTGTGATATGGCACAG
TCAGTTCTGGGCCCAATCAGCGACGAGACTCTGTACCGCTTGCATCTGTG
GGGGGGAGGCAGGCAAGCCGCCGGAGGGGGAGGCGGCGGCATGGATGAGT
ACATCGGTCGAGCGGCACATATATCGATGATGGACTCGCCTAGTTTGGTG
TGTCTGCTTCTATGTACTCTACTGGACCTCATCCGCTGAATATCGATGAT
GGACTCGCCTAGTTTGGTGTGTCTGCTTCTATGTACTCTACTGGACCTCA
TCCGCTGA
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