mRNA_H-paniculata_contig12716.1704.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12716.1704.1
Unique NamemRNA_H-paniculata_contig12716.1704.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12716.1704.1 vs. uniprot
Match: D8LTH9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH9_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 3.220e-12
Identity = 37/60 (61.67%), Postives = 46/60 (76.67%), Query Frame = -2 
Query:  170 SKRRRQLWMREISLNERRYERRKEEARRHFEARQQQLLRWMVNEEAGRHDGLDGNAGPPP 349
            S +RRQLW   I  NE R+ER KE++R  ++ RQ++LL WMV+EEAGRHD LDG AGPPP
Sbjct:  237 SSQRRQLWALAIRENELRHERMKEDSRSEYDVRQKELLSWMVDEEAGRHDHLDGTAGPPP 296
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BLAST of mRNA_H-paniculata_contig12716.1704.1 vs. uniprot
Match: A0A6H5JNI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI7_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.970e-11
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = -2 
Query:  170 SKRRRQLWMREISLNERRYERRKEEARRHFEARQQQLLRWMVNEEAGRHDGLDGNAGPPP 349
            S +RRQLW   I  NE R+ER KE+ R  ++ RQ++L+ WMV+EEAGRHD LDG AGPPP
Sbjct:  860 SSQRRQLWALAIRENELRHERMKEDGRSEYDVRQKELVSWMVDEEAGRHDHLDGTAGPPP 919
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12716.1704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LTH9_ECTSI3.220e-1261.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNI7_9PHAE1.970e-1160.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12716contigH-paniculata_contig12716:77..495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.5000703-UTR-H-paniculata_contig12716:76..1651622928993.5000703-UTR-H-paniculata_contig12716:76..165Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12716 77..165 +
1691480694.3809264-UTR-H-paniculata_contig12716:76..1651691480694.3809264-UTR-H-paniculata_contig12716:76..165Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12716 77..165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.5180728-CDS-H-paniculata_contig12716:165..4951622928993.5180728-CDS-H-paniculata_contig12716:165..495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12716 166..495 +
1691480694.3889043-CDS-H-paniculata_contig12716:165..4951691480694.3889043-CDS-H-paniculata_contig12716:165..495Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12716 166..495 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12716.1704.1prot_H-paniculata_contig12716.1704.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12716 166..495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12716.1704.1

>prot_H-paniculata_contig12716.1704.1 ID=prot_H-paniculata_contig12716.1704.1|Name=mRNA_H-paniculata_contig12716.1704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MHIVVISLTPPGTPSMPPPPYQFMSSSGGGPAFPSNPSCRPASSFTIHRN
SCCCRASKCLLASSFLLSYLRSFKLISRIHNCLRRLLFIAASALNGDLLP
NSSKSKSPDP
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mRNA from alignment at H-paniculata_contig12716:77..495+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12716.1704.1 ID=mRNA_H-paniculata_contig12716.1704.1|Name=mRNA_H-paniculata_contig12716.1704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=419bp|location=Sequence derived from alignment at H-paniculata_contig12716:77..495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCCCATTACTGTATACTGGTGTTGATGATAATGACTACATGCATCTTTG
GTTTGTAGGCAGCACGACCTTAGCATAACAAGTAAGTGAATGCATATAGT
AGTAATCTCCTTAACCCCCCCCGGCACCCCCTCAATGCCACCCCCTCCTT
ATCAGTTCATGTCATCATCCGGGGGTGGCCCGGCGTTTCCATCCAATCCA
TCGTGTCGCCCAGCCTCTTCGTTTACCATCCACCGCAACAGTTGCTGCTG
CCGCGCTTCAAAGTGCCTTCTGGCCTCTTCCTTCCTCCTCTCGTACCTCC
GTTCATTCAAGCTAATCTCGCGCATCCACAATTGCCTTCGTCGCTTGCTG
TTCATCGCCGCCTCCGCACTTAACGGAGATCTGCTGCCGAATTCGTCCAA
GTCCAAGTCTCCTGACCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig12716:77..495+

>mRNA_H-paniculata_contig12716.1704.1 ID=mRNA_H-paniculata_contig12716.1704.1|Name=mRNA_H-paniculata_contig12716.1704.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig12716:77..495+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATATAGTAGTAATCTCCTTAACCCCCCCCGGCACCCCCTCAATGCC
ACCCCCTCCTTATCAGTTCATGTCATCATCCGGGGGTGGCCCGGCGTTTC
CATCCAATCCATCGTGTCGCCCAGCCTCTTCGTTTACCATCCACCGCAAC
AGTTGCTGCTGCCGCGCTTCAAAGTGCCTTCTGGCCTCTTCCTTCCTCCT
CTCGTACCTCCGTTCATTCAAGCTAATCTCGCGCATCCACAATTGCCTTC
GTCGCTTGCTGTTCATCGCCGCCTCCGCACTTAACGGAGATCTGCTGCCG
AATTCGTCCAAGTCCAAGTCTCCTGACCCCATGCATATAGTAGTAATCTC
CTTAACCCCCCCCGGCACCCCCTCAATGCCACCCCCTCCTTATCAGTTCA
TGTCATCATCCGGGGGTGGCCCGGCGTTTCCATCCAATCCATCGTGTCGC
CCAGCCTCTTCGTTTACCATCCACCGCAACAGTTGCTGCTGCCGCGCTTC
AAAGTGCCTTCTGGCCTCTTCCTTCCTCCTCTCGTACCTCCGTTCATTCA
AGCTAATCTCGCGCATCCACAATTGCCTTCGTCGCTTGCTGTTCATCGCC
GCCTCCGCACTTAACGGAGATCTGCTGCCGAATTCGTCCAAGTCCAAGTC
TCCTGACCCC
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