mRNA_H-paniculata_contig12711.1702.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12711.1702.1
Unique NamemRNA_H-paniculata_contig12711.1702.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12711.1702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12711contigH-paniculata_contig12711:2804..3705 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size221
Cds size219
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.0830147-CDS-H-paniculata_contig12711:2804..29681622928993.0830147-CDS-H-paniculata_contig12711:2804..2968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12711 2805..2968 -
1691480694.2436473-CDS-H-paniculata_contig12711:2804..29681691480694.2436473-CDS-H-paniculata_contig12711:2804..2968Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12711 2805..2968 -
1622928993.1214-CDS-H-paniculata_contig12711:3650..37051622928993.1214-CDS-H-paniculata_contig12711:3650..3705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12711 3651..3705 -
1691480694.2540522-CDS-H-paniculata_contig12711:3650..37051691480694.2540522-CDS-H-paniculata_contig12711:3650..3705Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12711 3651..3705 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12711.1702.1prot_H-paniculata_contig12711.1702.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12711 2805..3705 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12711.1702.1

>prot_H-paniculata_contig12711.1702.1 ID=prot_H-paniculata_contig12711.1702.1|Name=mRNA_H-paniculata_contig12711.1702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=73bp
GSGTRSAAAAFTSRTPPPGICRCTTKHCQTRGWIMFWVICPTLRTRCWLC
STSCKAAGISCYCVAEVPPGDCR
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mRNA from alignment at H-paniculata_contig12711:2804..3705-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12711.1702.1 ID=mRNA_H-paniculata_contig12711.1702.1|Name=mRNA_H-paniculata_contig12711.1702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=902bp|location=Sequence derived from alignment at H-paniculata_contig12711:2804..3705- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCAGGCACTAGGTCGGCGGCAGCAGCATTTACGAGTCGCACACCTCC
GCCAGGTGAGTTGAGCCGAATGGCACAAAACATGTGATTTGAGTTTCGTA
GTTCTGTGTGGGATCTTTGGTGCCCACGCATTGCCGTCTGCACTCGTGCT
GCTTGCTGCTGCTCGTGCGATCATGGGACGCCAAACTACCCTGACTGGCG
CAGCAACAGTTACGCAACTGCTGCACACTGCGGTACTACCGCTGTATCTG
TGCAAGTACTATTACCACTGCTGTAAACACTGCTGAAATCAATGATGTAT
ACCCCGGCTGTATCATGCGCATATTCTGTACGTACTCGCACACTGAATAT
GATCGTACGACATATCGTATGTATTGCTCGCACTGGCATATTACGACTGC
TGTACAAATACAATTGCTGTACTCGTACCTGTTGTTCCGTTACCGCTGCT
GTATCATGCGGACTCGCATCTCATGCATTTGATGGTATGATTGCTGTTCT
TACTCGCACGCGTCGGTTCTCGTAGTATCGCACGATACCTTCGTTGTCTG
CACAAGCAGGAGTGCGAAAGACATGTCTTGACCGCGCTCCACGAATGTCT
GTACTACTGGGTACACGTCTGTACAACTGCCCACAAAACACCCGACGTAC
GGACTAGTATGCAAATTCATCGACTAGTATTGACGCCCGAGCTCTTCCCC
TTTGCTTCCCCTTTGCTCTGGCTTCAATTCACGACAGGCATTTGTCGATG
TACGACAAAGCACTGCCAAACAAGAGGCTGGATCATGTTTTGGGTAATTT
GCCCGACTTTGAGAACGAGATGTTGGCTCTGCAGCACGTCGTGCAAAGCC
GCGGGCATATCCTGCTACTGTGTCGCCGAAGTTCCACCCGGAGATTGCAG
GG
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Coding sequence (CDS) from alignment at H-paniculata_contig12711:2804..3705-

>mRNA_H-paniculata_contig12711.1702.1 ID=mRNA_H-paniculata_contig12711.1702.1|Name=mRNA_H-paniculata_contig12711.1702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at H-paniculata_contig12711:2804..3705- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTTCAGGCACTAGGTCGGCGGCAGCAGCATTTACGAGTCGCACACCTCC
GCCAGGGTTCAGGCACTAGGTCGGCGGCAGCAGCATTTACGAGTCGCACA
CCTCCGCCAGGCATTTGTCGATGTACGACAAAGCACTGCCAAACAAGAGG
CTGGATCATGTTTTGGGTAATTTGCCCGACTTTGAGAACGAGATGTTGGC
TCTGCAGCACGTCGTGCAAAGCCGCGGGCATATCCTGCTACTGTGTCGCC
GAAGTTCCACCCGGAGATTGCAGGGCATTTGTCGATGTACGACAAAGCAC
TGCCAAACAAGAGGCTGGATCATGTTTTGGGTAATTTGCCCGACTTTGAG
AACGAGATGTTGGCTCTGCAGCACGTCGTGCAAAGCCGCGGGCATATCCT
GCTACTGTGTCGCCGAAGTTCCACCCGGAGATTGCAGG
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