mRNA_H-paniculata_contig1271.1699.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1271.1699.1
Unique NamemRNA_H-paniculata_contig1271.1699.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: D7G6K9_ECTSI (Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K9_ECTSI)

HSP 1 Score: 350 bits (898), Expect = 2.750e-115
Identity = 188/266 (70.68%), Postives = 213/266 (80.08%), Query Frame = 2 
Query:   53 ASMIVSSSTAFLPSASLKA--SSEFSRPTAVRSQQSTRAKEVPAARRGGPLMSAPPQLAITLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCMAKW 844
            A+M+ SS     PS +      S  SR T  + Q S RA    A R   P MS+   L ITL+DDVI++PL+PV NYILVKMFAA+S+TAGGIVLPDEAQD+PCEGLVVA GPGR HPLTG LIPMCV  GDT+LFSRWSGRK+KY GEDHMFIMDDDLVLVYRG ELT DSLKMVRDQVLVVTEKGE+ETD GIVIAA+TA KE++SQG VVA+GEGRT S G I  CPFK GD+VKF+EYAP+EIKIKG +YAVVRMVDC+A+W
Sbjct:   13 AAMLASSGAFLAPSLNFGVLPRSASSRSTNQQQQHSGRAV---ARRATSPSMSS---LVITLEDDVIDKPLQPVGNYILVKMFAAVSRTAGGIVLPDEAQDVPCEGLVVAHGPGRTHPLTGTLIPMCVSEGDTVLFSRWSGRKVKYCGEDHMFIMDDDLVLVYRGPELTEDSLKMVRDQVLVVTEKGESETDAGIVIAASTAEKEKASQGRVVAIGEGRTGSTGEIVPCPFKAGDNVKFMEYAPVEIKIKGSYYAVVRMVDCIARW 272
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: A0A835YHA6_9STRA (Chaperonin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHA6_9STRA)

HSP 1 Score: 244 bits (622), Expect = 4.790e-74
Identity = 128/229 (55.90%), Postives = 159/229 (69.43%), Query Frame = 2 
Query:  158 RAKEVPAARRGGPLMSAPPQLAITLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCMAKW 844
            R+    A+R   P      +L  TLDD VI  PL+PVSN+ILVK+  + S T GGIVLPD++ D P EG VVA GPGR HP T  LIPMCV  G  +++S++SG+K+KY+G DH  I DDDL+LVY GE+ T  +LKM+RDQVLV   + E  TD GIVI+A TA KE  S+G VVAVG GRT S G +  C  +PG+ VKF EYA IEI ++ E YAVVRMVDC++KW
Sbjct:   32 RSSSAAASRSSRPTCLTMAELVHTLDDKVIRGPLQPVSNFILVKIRDSASLTTGGIVLPDQSIDKPSEGEVVATGPGRSHPHTAELIPMCVAPGQRVMYSKYSGKKVKYDGLDHTLITDDDLLLVYEGEKPTAANLKMIRDQVLVKITRSEGRTDTGIVISAQTAGKELKSEGQVVAVGPGRTASNGQLTPCYVQPGEFVKFREYAGIEITLESESYAVVRMVDCLSKW 260
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: A0A7S1UQU6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UQU6_9STRA)

HSP 1 Score: 191 bits (484), Expect = 3.090e-53
Identity = 99/204 (48.53%), Postives = 140/204 (68.63%), Query Frame = 2 
Query:  227 TLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCMA 838
            +LD + I  P  P+ N++LVK   AL+ T GGI+LPDEA++ P EG+V+AAGPG++HP TG  I   V+AGD++L+  + G  IKYN E+   I DDD++L Y G  +T+D+++  RD VLV  E+ + ET  GIVIAA   S++  +QG V  VGEGR TS G  +E P +PGD VKF +YA  E++I G+ Y++V+MVD +A
Sbjct:   84 SLDGEDIRGPATPLGNFVLVKTKDALTATTGGILLPDEAKERPTEGVVIAAGPGKLHPHTGIRIHNPVKAGDSVLYGMFDGAPIKYNDEECQMIRDDDVLLFYEGAAMTLDNVQPCRDYVLVELEEEDLETASGIVIAATVTSEDIPNQGIVAKVGEGRLTSSGKFSESPVQPGDMVKFKDYAGNEVRIDGKPYSLVKMVDILA 287
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: A0A8J2WID0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WID0_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.440e-52
Identity = 96/207 (46.38%), Postives = 134/207 (64.73%), Query Frame = 2 
Query:  227 TLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGE-ELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCMAKW 844
            TLDD  I  PLEPV+NYILVK+   +  T GG+ LPD+A++ P  G+VVAAG G+ HP TG ++P  V  GD +L+ ++ G  +KY GEDH  I DDD++L + G+  +T+  +K V D VLV   K E ET  GI +AA  + + R++ G VV  G GR  ++G     P + G+SVKF +YA  +I++ GE Y VVR+ DC+AKW
Sbjct:   32 TLDDAPIGGPLEPVANYILVKIDDGIDATKGGVFLPDQAKEKPSAGIVVAAGAGKAHPDTGVVVPNPVTEGDRVLYGKFDGTSVKYCGEDHQLIKDDDILLSWAGDASMTLGEVKCVADNVLVQVTKVEEETASGIALAAGVSEQTRTTSGVVVKTGTGRVAADGASVPVPVEVGESVKFKDYAGADIRLDGEDYIVVRVPDCLAKW 238
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: A0A7R9UAA2_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAA2_9STRA)

HSP 1 Score: 181 bits (458), Expect = 3.960e-50
Identity = 98/227 (43.17%), Postives = 145/227 (63.88%), Query Frame = 2 
Query:  173 PAAR---RGGPLMSAPPQLAITLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCMAKW 844
            P+AR   RG  + +A   +   LD   I   L+PVSN++LVK+  A+++TAGGI++P+ A+  P +GL VA GPGR HP TG L+P+ V+AG+ +++  + G KIKYN EDH+ + +D+++L Y G+ +  D+++ V D+VLV   K E +T  GIV++   ASK R  +G ++  G GR +SEG     P KP D +KF EY   E+ I+G  Y VVR  D +AKW
Sbjct:   11 PSARTPPRGLAVSAAETDVPPNLDGRPITSDLQPVSNFVLVKLRDAMAQTAGGIIMPETAKKRPNDGLAVAVGPGRYHPETGKLMPVSVKAGERVMYGEYMGTKIKYNEEDHVLVREDEVLLRYTGDIIKKDTVEPVGDKVLVEMTKEEKQTASGIVLSPE-ASKSRVCEGIILQCGPGRMSSEGETIPMPVKPDDKIKFREYGGEEVNIEGTEYMVVRANDILAKW 236
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: W7TNB8_9STRA (20 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TNB8_9STRA)

HSP 1 Score: 178 bits (452), Expect = 4.950e-49
Identity = 93/208 (44.71%), Postives = 139/208 (66.83%), Query Frame = 2 
Query:  221 AITLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCMAKW 844
            A  LD   I  PLEP++N +LVK+  A   +AGGIVLPD+A++ P EG VVAAGPGR HP T  L+PM V+ G  +L+ ++ G  + Y+G  H+ I DDD++L + G  +T+D+++ VRD++LV  +K + ++  GI++A +  +K R ++G V+ VG GR  S G +A+   KPGD VKF ++A  EIKI+ E Y V+  VD +A+W
Sbjct:   47 AHNLDGQEIPGPLEPLANVLLVKVKDAEDMSAGGIVLPDQAKEKPTEGEVVAAGPGRQHPETAVLMPMPVKPGSKVLYGKFDGMSVIYDGAPHVLIRDDDILLTWTGSSMTLDAVETVRDRILVKVKKAQEKSAGGILLAPSM-TKARPTEGEVIKVGPGRIASTGEVADVKVKPGDGVKFKDFAGTEIKIQDENYLVMYSVDVLARW 253
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: A0A7S2LH03_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LH03_9STRA)

HSP 1 Score: 170 bits (431), Expect = 6.970e-46
Identity = 91/204 (44.61%), Postives = 128/204 (62.75%), Query Frame = 2 
Query:  227 TLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCMA 838
            TLD + I  P+ PV N++LV+    ++ +AGGI+LPD+++    EG VVAAGPGR+HP TG  I   V+ G  +L+  + G +IKYN ED   I DDD++L Y G  +T++++   RD +LV  EK + ETD GIV+AA+        QGTVV VGEGR  S G     P   G+ VKF +YA  ++K+ GE +  VRMVD ++
Sbjct:   57 TLDGEKIRGPITPVGNFVLVRTKETVTASAGGILLPDQSKRRATEGEVVAAGPGRLHPHTGVRISCPVDPGQNVLYGLFDGTQIKYNDEDMQMIRDDDILLYYSGPMMTLENVTPCRDYLLVKVEKDKLETDSGIVVAASVTKDLEFCQGTVVKVGEGRMCSTGEFTPSPVGVGEFVKFRDYAGNDVKLGGEDFCCVRMVDILS 260
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: A0A7S1ZF55_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZF55_TRICV)

HSP 1 Score: 165 bits (417), Expect = 7.940e-44
Identity = 95/239 (39.75%), Postives = 140/239 (58.58%), Query Frame = 2 
Query:  119 FSRPTAVRSQQSTRAKEVPAARRGGPLMSAPPQLAITLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCM 835
            FS P  +R+Q+        AA    PL +       TLD + I  P+ P+ NY+LV+    L+ T GGIVLPD++++  CEG V+AAGPG++HP TG  I   +  G ++L+  ++G  + YN E    I DDD+++ Y G  +T  +    RD VLV T++ + ET  GIV+AA+    +   +GTV  VGEGR  S+G     P K G++VKF +Y   ++KI+GE Y+ VRMVD +
Sbjct:   26 FSPPAFLRTQR--------AATAAAPLFAE-----CTLDGETIRGPITPLGNYVLVQEKDVLTSTEGGIVLPDQSKERACEGEVLAAGPGKLHPHTGVRIVNPITEGMSVLYGEFAGTSMVYNDEQVTMIRDDDVIIYYEGTTMTKANAIPCRDYVLVKTKEQKLETASGIVVAASVTRGDVPCEGTVFKVGEGRMCSKGEFTPSPVKVGETVKFKDYGGNDVKIEGELYSAVRMVDIL 251
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: A0A7S2Y260_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y260_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.770e-43
Identity = 87/209 (41.63%), Postives = 133/209 (63.64%), Query Frame = 2 
Query:  224 ITLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTE----KGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCMA 838
            +TLD   I  P+ P+ N ILVK+   L+ ++GGI+LPD+A++ P EGLVV AGPG++HP TG  I   ++ G ++L+ ++ GR ++YNG++   I DDD++L Y G  + +DS+  VRD VL+  +    K + +T  G+VIA          +G V  VGEGR  S G  ++ P K GDSVKF +YA  E+ I+G+ Y +V+MV+ ++
Sbjct:   41 MTLDGMEIRGPITPLGNNILVKVKDTLTASSGGILLPDQAKERPTEGLVVTAGPGKLHPYTGVRITNPIKEGVSVLYGKFDGRPVEYNGDECQMIRDDDVLLYYTGVTMKLDSVVPVRDYVLIELDEKLGKDQLQTSSGVVIAQQVMKGANPCEGIVAKVGEGRLASLGNFSKPPVKVGDSVKFKDYAGNEVMIEGKQYTLVKMVNILS 249
[Close]
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Match: A0A7S2XTD7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XTD7_9STRA)

HSP 1 Score: 163 bits (413), Expect = 3.560e-43
Identity = 91/214 (42.52%), Postives = 129/214 (60.28%), Query Frame = 2 
Query:  194 PLMSAPPQLAITLDDDVIERPLEPVSNYILVKMFAALSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTILFSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTEKGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGDSVKFLEYAPIEIKIKGEFYAVVRMVDCM 835
            PL S P     TLD + I  P+ P+ N++LV+    LS T GGI+LPD+AQ+ P EG V+AAGPG IHP TG LI   V  G  +L+ ++ G  + YN ED   I DDD++L Y G  +T++++   RD VLV   K + E   G+VIA++    +   +G V+ VGEGR  S+G     P   GD VKF +YA   +KI+ + Y++VRM+D +
Sbjct:   50 PLASGP----TTLDGETIRGPIAPLGNFVLVRTKDMLSSTEGGILLPDQAQERPTEGEVMAAGPGNIHPDTGILIDNPVIKGMNVLYGKYDGVGMVYNDEDVQMIRDDDVLLYYTGIRMTLENVTPCRDYVLVEIPKTKLEMSSGVVIASSVTKDDLPCEGAVILVGEGRMCSKGVFTPAPCAVGDRVKFRDYAGNPVKIQNKEYSLVRMIDLL 259
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1271.1699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6K9_ECTSI2.750e-11570.68Chaperonin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G... [more]
A0A835YHA6_9STRA4.790e-7455.90Chaperonin n=1 Tax=Tribonema minus TaxID=303371 Re... [more]
A0A7S1UQU6_9STRA3.090e-5348.53Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A8J2WID0_9STRA1.440e-5246.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7R9UAA2_9STRA3.960e-5043.17Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TNB8_9STRA4.950e-4944.7120 kDa chaperonin n=2 Tax=Monodopsidaceae TaxID=42... [more]
A0A7S2LH03_9STRA6.970e-4644.61Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S1ZF55_TRICV7.940e-4439.75Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2Y260_9STRA2.770e-4341.63Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2XTD7_9STRA3.560e-4342.52Hypothetical protein n=1 Tax=Attheya septentrional... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1271contigH-paniculata_contig1271:10301..26763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.7
Seed ortholog evalue1.2e-40
Seed eggNOG ortholog159749.K0R458
KEGG koko:K04078
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Belongs to the GroES chaperonin family
EggNOG OGs2XGQX@2836,COG0234@1,KOG1641@2759
Ec32 ortholog descriptionGroES (chaperonin 10)-like
Ec32 orthologEc-05_006580.1
COG Functional cat.O
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029,ko03110
Exons7
Model size1519
Cds size846
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.738145-UTR-H-paniculata_contig1271:10300..103011622928992.738145-UTR-H-paniculata_contig1271:10300..10301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1271 10301..10301 +
1691480694.0848563-UTR-H-paniculata_contig1271:10300..103011691480694.0848563-UTR-H-paniculata_contig1271:10300..10301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1271 10301..10301 +
1622928992.8555188-UTR-H-paniculata_contig1271:26091..267631622928992.8555188-UTR-H-paniculata_contig1271:26091..26763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1271 26092..26763 +
1691480694.149986-UTR-H-paniculata_contig1271:26091..267631691480694.149986-UTR-H-paniculata_contig1271:26091..26763Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1271 26092..26763 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.7510967-CDS-H-paniculata_contig1271:10301..104921622928992.7510967-CDS-H-paniculata_contig1271:10301..10492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 10302..10492 +
1691480694.094464-CDS-H-paniculata_contig1271:10301..104921691480694.094464-CDS-H-paniculata_contig1271:10301..10492Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 10302..10492 +
1622928992.765238-CDS-H-paniculata_contig1271:13687..138351622928992.765238-CDS-H-paniculata_contig1271:13687..13835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 13688..13835 +
1691480694.1021674-CDS-H-paniculata_contig1271:13687..138351691480694.1021674-CDS-H-paniculata_contig1271:13687..13835Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 13688..13835 +
1622928992.781085-CDS-H-paniculata_contig1271:18857..189921622928992.781085-CDS-H-paniculata_contig1271:18857..18992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 18858..18992 +
1691480694.1101038-CDS-H-paniculata_contig1271:18857..189921691480694.1101038-CDS-H-paniculata_contig1271:18857..18992Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 18858..18992 +
1622928992.799372-CDS-H-paniculata_contig1271:20624..206961622928992.799372-CDS-H-paniculata_contig1271:20624..20696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 20625..20696 +
1691480694.1177773-CDS-H-paniculata_contig1271:20624..206961691480694.1177773-CDS-H-paniculata_contig1271:20624..20696Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 20625..20696 +
1622928992.8119023-CDS-H-paniculata_contig1271:21368..214671622928992.8119023-CDS-H-paniculata_contig1271:21368..21467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 21369..21467 +
1691480694.128222-CDS-H-paniculata_contig1271:21368..214671691480694.128222-CDS-H-paniculata_contig1271:21368..21467Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 21369..21467 +
1622928992.8278089-CDS-H-paniculata_contig1271:23706..238501622928992.8278089-CDS-H-paniculata_contig1271:23706..23850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 23707..23850 +
1691480694.135541-CDS-H-paniculata_contig1271:23706..238501691480694.135541-CDS-H-paniculata_contig1271:23706..23850Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 23707..23850 +
1622928992.8415327-CDS-H-paniculata_contig1271:26034..260911622928992.8415327-CDS-H-paniculata_contig1271:26034..26091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 26035..26091 +
1691480694.1426725-CDS-H-paniculata_contig1271:26034..260911691480694.1426725-CDS-H-paniculata_contig1271:26034..26091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1271 26035..26091 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1271.1699.1prot_H-paniculata_contig1271.1699.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1271 10302..26091 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1271.1699.1

>prot_H-paniculata_contig1271.1699.1 ID=prot_H-paniculata_contig1271.1699.1|Name=mRNA_H-paniculata_contig1271.1699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=282bp
MRCSGRMDLACVASFLAASMIVSSSTAFLPSASLKASSEFSRPTAVRSQQ
STRAKEVPAARRGGPLMSAPPQLAITLDDDVIERPLEPVSNYILVKMFAA
LSKTAGGIVLPDEAQDIPCEGLVVAAGPGRIHPLTGNLIPMCVEAGDTIL
FSRWSGRKIKYNGEDHMFIMDDDLVLVYRGEELTVDSLKMVRDQVLVVTE
KGETETDKGIVIAAATASKERSSQGTVVAVGEGRTTSEGGIAECPFKPGD
SVKFLEYAPIEIKIKGEFYAVVRMVDCMAKW*
back to top

mRNA from alignment at H-paniculata_contig1271:10301..26763+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1271.1699.1 ID=mRNA_H-paniculata_contig1271.1699.1|Name=mRNA_H-paniculata_contig1271.1699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16463bp|location=Sequence derived from alignment at H-paniculata_contig1271:10301..26763+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATGAGGTGCTCTGGAAGGATGGATTTGGCGTGCGTAGCTTCGTTCCTTG
CTGCGTCGATGATTGTCTCGTCAAGCACAGCGTTTTTGCCCTCAGCGTCG
CTGAAAGCTTCCTCTGAATTTTCTCGACCAACAGCCGTACGATCTCAGCA
GAGCACTAGGGCGAAGGAGGTGCCTGCTGCCAGGAGAGGAGGGTGAGCTT
ATGATACGCAAGTGGTGTTGGCCAGGATGCCAATTTTGGAATAGGAGAGT
TTTTGATCAGGTTGGAGATTTATGTTGTGTGCAGATTAGTTAAAGGTTGT
CCCTTGTGAAGAAAGCATGTGGCTCCGGTATATCTCGTACATTATACATG
TGTTCGTCCACGCCAACTTGTCATTGTATAACACTTGGGACTTGAGAGTT
CGGACGCACTAGTCGGTCATGCTATCAATGGCAGCCTGACTGTATACTGT
ACTGACTTCTCTATTGCTGATATCTTGAGCTCTTGATCAAAGTACTGGCC
TGTAGACGGTAGACTGGGGATGCTGCTGTTGTTTCAGCTTACTCTGCCGT
ATTTGCATGAATAGGCGATGTTTACCGATTGCATACAACTGCATGGCTCT
ACCGTCTGTACTGCGTCGAGGTGCGAAACGATCCCCTCGATTGAGGCTCT
AGAGAATGATTAGCCTGTTATCCCCAGCGTACCTTTTATCCATTGCGCGA
TAGCCCTTCCACGCAGAACTACCGGATCATTATGGCTGACTTACGTCTCT
GTTCGAAATGTTTTTCTTCCAGTCAGGCAGACTTTTGCCATTATACTCTA
TTCCCCTTCTAAGGGGATGAGTCTACTACCTCTGCATCCCTCCGTTACTC
TTTAGGAAGCGACCGCCCCAGTCAAACTACCCAGCAAGCACTATCCTCAA
AAAAGAGTAAGTAAACCAAAAAAATCTTACGGTGATACTCACTAACGCAT
CCATAATTCTCAAGCGCGTCCACTGTAAAGGACACACCGATACTATAGAC
TGACGTCAACTGAAAACCATATAACCCGGAGATATCAATCACACCAGGCT
GTGAAGATTTCTCAAGCACGACTATCAATATCTCTAGACCGTACGTTATC
GAGAAATCCCGCCCACCGATAGATGTCCGCAAGATCTTTCCAACGGTACA
CTACTCGTCGTCAGTACTGCCGTTGTTGTGGAGATAATCACGTTTTCCAA
GCGCCTGCAGCCCGGTATCAAATTAGCCCTACAGGCTCTAGTACAGACAA
TGTACATACAGTCCAGTCCAGTGTTATACGGTGAGCTTGTAAGGCCGCAT
GATCTTATGGGCACAAAAAACTTTGTTTTTTAAGCTTATTTTTTCAAGTT
TTGGACGAGAAATTTTCCGACGCGAACTGTACTGTAGAACCACTTATCCA
CGAGTTTATCTCATGCTGATCTGAAACTAGGTACTGCATACGCCATGACC
GAACATGAGACCATGTCTTGTTGTCTCATTTAGTTATGGTGCTGACTACT
GTGCAGTTAGAGTCGCGAATTCGACTGATCAACGGTCAGAACTGTGGCAA
CAGCCCCGCAGTTTATCCCAGCGATGTCTTCCGACACGCAGTTGTGAATA
CCTCCTCCTCATTGTCAAATGACTCGCAATACGGTTTGCAATCACTGGCA
CCACCGTGCAACAACGCTCGGGAGAGATGACCTGGTGCTACATTTCTGCA
ATATAAGGGTCGATTAGTGGGGCTGAACTGGTTTCGTGCTTGGAAGTGCA
AAGAGACTGTCTCACGGTCCATTCGGTACCATGTATTACCCGGGTGCCGG
AGCTTCGAGCATATCACTTCTTTTACACTACTGCTTCCCTAATACCACCC
CCCTGAATTACAAATCATGTTCGGTTTTTGAAGGGTCATGAGCGGAGTGA
AATCCTTTTAAAAAAAATGTTCATCGCTTTTGTTGCAGTGCAAATGAATA
TCAATGAAGGCAGCATCTTCATCGGACCGCTCCTTCATCCAAGGTGTGAA
AGGTGAACACATAGCCTCGTTGTTCCACACGTTAAGGAAACTTGGTACTG
TCTGAATGTAGTGTTTTACTAACATGTTTTATTATGCAAATGCATATGCA
TACATGCACTTGAATGTTATCTTGGTTTATTTATTGATCACATTCCGCAA
TAGCTGACTTTCACACCTTCATCGAAGTTCAGATGAGGATCAGTGAAGCC
ACAGCACCTTCACCCTCCTGACGAATACTTGGCGGATTCGCCACGAAATT
TTAGAAGTATTCGCCTGATTTTCACAATGAGCAGACACGTAAAATGAAGT
ACCCACCCCTGTCTATTCGACTTGCCACTATTATTAGCAGTCGTTGATGG
TCCGTGACACATAACATACACGAGCCCATTCTGAAACTCCGGTGAATATT
TTTTTTTCGTGGCAAATATACCAATTATTCGTATTTTTCCGTGGGATTTA
TCCTTGAAGTCGGCACCTGGTACTTTGTAGGCTGCACCTGGCATATATTT
TTCATACCCAACATTGGAACAGAGTATACACAAAATTATCATCTTCTGTA
GGGTGTTCTCCATACAACTCTAATTAATGACACAGAAAGAGTACAGCAAG
AGTTAACGGATCTATATAATATTGCAAGCTAACTCCGCGGTATTGTTTTC
AGCTGGTCAATTGAAATATTTCACGCATCGCGCGCGTGCCCCATTATGTT
GCAGGGCGTAGACGTGCAGTTGTTCGCGGGCTTGTTGATTCACTGTTCAT
TCATCAAGAGTCCCTGTTTTAGTTTTTGTCGATGGGCTTTTGAAGGTCAA
GTGTAAGTGTTGTTGACAAACATGCTGGACATGGCTGTACAATCAAGGTG
CGTTGTTGCATTGCTCTCCTTCAACTGAACATTCGGTTAGATATCCCGGT
CGTGAATTGCGCGATCTAATGTGGAAGAAAAAACATCGCTAAATCGTTAC
GAGGCTCCCTATTCGATGTGACCTGGGTACCTCCCCCTCCTTTCAAGCAG
GAGCACCTATAAGTACATGTGTGTCTTGCTGACTGTATCGACACATACGA
CACGGATTGACTGATGAACAACTGAGGGCTTGCAAGTGAGGTGGGTAAAT
ATGTCAAGTCCTCACTTCCACTACACGTCATGTCGTCTATACGCACAGTA
TAGTCAGTAGACATGTGATGGATACTGCTAAATCACTACCCCCTTAGTAT
CTACAGCAATCCACGCGCAACGTCCAACCGCCTAACCTCTATCTCCCCCA
CGTATAGTCTTTTCTTAACCCTCCCCCCCCCCCCGCCGACGCTATCTCTA
TTTCCCTCCGTCCACTTGCGACTTGCGGAAAACCATCATGAACGTTCTTG
CCCGGTGGTTTGTGTCAACGCACCCATGCAAGTGTAGGCCTCTGATGTCT
GCTCCGCCGCAGCTTGCCATCACCCTCGACGATGATGTCATCGAGCGACC
ACTAGAGCCGGTGAGCAACTACATCTTGGTCAAGATGTTCGCCGCGCTAT
CGAAAACGGCGGGGGGGATAGTACTGCCCGATGAGGTGAGTTGAGAGACT
GGAGGGAGAAAGTTGCGAGAACAAAACGGATAAGGAAGGGGGGGTGTGTG
ACAGGGGTCGCCAGGAGGCACAGGCAGGCTGTCTTACTGGGTGACAAAGG
CTATATATAGTGTATATGGTCTCGAGCGAAACATCTTCCATATCCCATAT
ATTACGTTCAGAACGTCATATAACACACGTTCTAGTGCCCACAAAACGTA
GTATACAGTGGAGTGATTACACTACGACAGATGCACCGTACAATGCTTGC
TGAGAGCACTTTATACTCAGTCTATGGTACTTACCAGAACACAATATACG
GTATAGTGCTTACTGGACATCACATTCCGTATTCTGGGTAAATTTCAGAA
CGTCATATACCATATAGTACTTACCAAACATTCTGGGTGGTCGGCTTCCC
AAAAAAGTGGTAGTTTTGACAACTGAGACACACGCCCTTGCAACGTTGAA
AAAGATATGGGGCTGTGTATGGGTGCCCATACGTTTACAATATTTCTGTA
CATCGTATAATACCTGGGACAATACACACATGGAGTATATACTAGTAGGA
GGGCCACCGCTCGGTCAATGCCGGCGGCTACGTCGACGGTGGCGCCGTAC
CTCGAGTCCACCCATACGGATTCGCTGTGGTTCGCTTACGCTCGCATTTA
GGCACACTTAACATTCAAGTTTAATTTTCACCCGGCGGTGAAAATGTGTG
CTCGAGCAATTGAAGTTGCTCACGTCGAGGTATTCCATGTTCCGAATCGC
CATATTTGTGCCCACTCGTATAGAGGTATACCAAGTCTTCACTCGAATTT
ACCCCTTCTAAAATGTGCACGTCCTATCACTCGAACGAAATGACACACAT
TTTGTATATGTGCACATTCATGCATTTCGGAATTTCGTTCCACTTGGTTA
TATTTTGGGGTACTCCGCCACTCGACTCCTACACTAACGTGTTCGAAACA
AGATTCATGGTCGTTGTGACCCTGGGGAATATTTATGAATCAGTTTAAAC
TGAATAAAAACATAATGTATTCAGATACAGATTCTTTTATAATTTACTAC
AAGATGGTAATTTTTTTACAAAATTTATTTCTAAGAAATTAGGTGATTCT
AAAAGAGGAAGTAAAGCAGATTTTTTTTATTGTAGAGCCCCGGAAAATTA
TGCTCTACAATTCAAACCACAAAATATAATTATTTCGACGGGTTATCCTA
GAAGTAAAAGAGAAAAAAAAATCTAATACAATTGCCCGTGGCAATGTTTG
GGTGATGCCCGACGCGAGTGTGGCTGAGTTGAGCTCTGCCAACGCACTCA
AGGCCTAGCAGGTAGGGTTCAGGACTACGATTATGGTTCCTTCCAGCGTG
AGCCCTGTTCACCATTTGATCGAACACAATGATTCACCCTTAGTGGTGCC
CCGAAGCGAGCAGGCCCAACGTTGGAACTAACGGCAATCCAAACCCGAGT
CCCCGCCCCCTAGGTACAGTGAGCATTGTCAAATCGGCGCCGCCAGAAGC
CGATTTGAGCAAAGCCTGTTTTGGGGCATAACTCAGAATCAACCAAACCA
TAACATTTCGATACCTTTCTGGGTATGCTATTATACCGAGTTGATGGACC
ATGGAGTCTCAAAAATTTCAGAGATCAGTTTTTGCAACAGGTCACCATTT
GTCCTTGTTTCAATTCAACGGTCAGCACTTAGTACCGAGCTGCTTCCGCG
TTGCTGACTTGGCCTACTGGTCTGGCTATCCATAATCCATATGTACCCAT
TGCCTTGCTCCCCCCCCCCCCCCCCCGTTTTGTACTTCCGTTCAATGTTT
GATGTAAGATGTCATAAGTCATGTAGTAAAAAACGTTATAGATATTCACC
TGTATGCAGTATGCACATATCGAAAAAAACAAACCTCGTCACAAAAGGCG
TTCGGATGTTACGGAGCAAGGGGACGCAGCGGGTGATCATTATCCATATG
TACTGCTGAAAACGGCGAGCCAGACTGAAAATCTTTGTCGCAGTACGAAG
TACCCGTCAAGTGGACTAGATAACAACGCACCGGGAGATGGATGTAGAGA
GGTTTCAGTCTGTCCGTGTGGGTGAGTTTTGCGAAATATCGGGGATGCCG
TACCTGCGTCCCACTTTCACATACGGGAAGATTAGGTTTGCCCGTCTGTG
AGTCGATGCTGCTCAATGAAATTCCTACTCCAAGAAAATACTCTGAAATT
CGCAAACGACTGCCCCCCACAATAGTTTAACCTATAAATGAAATGCCCTC
ACCATCTGGAATGTATCAATTTTTGCAGTAGGTCGGAGTTTATCCGTCAT
TCCAATTTTCAAAAAGTCAGCAATTCCTACCCAGCTCCTTCAGCCCTATT
GCCTTGGCCTACTGCCCTGGTCACCCGCATCCTCTCTGCACCCGCTGCAT
TTCTTCCCGCCCTATTCCTGCGCCGAGCACCTGTATCTCGTGCCACGTTC
TGACCTCGGGTGGGCTTTGTCCATGTGGTCACATTTCAATTTTTGGCTGT
TAATATATAAATGAACCTCGAGGATGCTACCAGAACTTTACCGAAGTGTG
CACTGAGGGAAGACTGTCAAGGCTTCGTGTGTGACTTGTGACAGATTTGA
GCGATTGGCACATGACCATACCGTGCTGCGAAGGTACTAGCTTGCTAATC
TCCCACAAGTAGCGATTCCTACTTGTTGTGTAACCACTATTATTTTAGCG
AGCAACAGTCATTATCCACAGGTCAGGCCTCGCTACGACGACTGTCGCCT
CCACACTCGCGCATAGGCAAATTGTCTCATGAGGTTTGTTTTTCAGAAAT
TAATCAGGTATAGAATTGAAATTCTGTTCCGAAGTTACCGTCGCCACCTC
CACCTTATCATGTAGCAATTAAGTTTAACTTACTTTTTTTCCCTGCAAAT
TCCACATGCCTCTGACGGAACAAAATTGTTCAACCGTGTTTTTTTTAGCC
CTATTTTCTTCTGTTCGATTTGATTAATATCTTCTGTAAAACGCCCAGTA
TTCTATTCGACAACACATATGTTTAATCTGTTCCATAAATGAAGTCGGTT
ATATTCGTCGGAGCACGTCTCCAAATCTCGACTGTTCAAAGGGTGTAGTT
GGAATTATCGGAAAGCAAAAAATTGAAAGATTCATGTATGTACTATATCG
AAGTGCATTCCGATTTTTGTATCAAAATTTATGGCCGCTTAAGGTTTACC
TACTTATTTCAATGTTCACGTTTTTCCTTTGGAAATATACCAAGAGGGGC
AAAAATATGGCCTTTTTTTCGGTCGAGTGCTTTCTTTTCCTTCGCACACG
CACTCGGTGGACTTCAAAAATATCCGCCAAAAACGATTCTCGGCCCTCAA
AAAGCATGCAGATTATCATAACAGGAAGTACAGCATCGATATAGATACCT
AGCTTTGACCATACCGTACCGTATGAACATGAAGTGTTGACTCAATAAGG
ACGGTATGAATGCCCGGGACGATATAAACTCTTCCCTCTCGCAAACTAAG
GCCGCTCACACTTGTCGAGAGACTGAAAGCACTCCCGGCCTTTGGAGATC
TTCGTCCAGTATACTTGGCAAGGGCGCAGTTTTCCGCTGGCATCGTTCAG
CACCGTAATTGTTGAGAAAATTGAATTTGATAAGACGTGTTTATCTTCCA
CCCATCAGGGATAATATAATCTCTCTCTCTATATATATATATATATACAT
GTGCGTGTACATACTGGAAAATAATCCCTAACAAGATATCTACCCATGAA
GATTGGATCCTGACCAAGGTATTATATTGTATCGTGTATATGCAAGGTAT
AAAACCATGCCCAAGAATGGCACCCCTGTCCCGCGATACCACCCCTGGTG
ATGAAGTATTTTGTGTTGATGGTACGGAGTCTACCAAAATCACCCCCCTT
GAATAGCGCCCCTTGTGATGAGGCCTACAATGTAGATCTTGGAGGGTATT
ATGCCTCTGTGAAAGACGGTAATGCATCAATCACGCGACGACGGGGAGAC
TTCTGACTACTCACACTCTCGAGGTAGCCCCATGCCACGCGGTGGATGCT
ATGCGAGCCGAACATGAACCACGGCAATCCGTAATTGCTCATCTTGAGCG
TCTCTGCTCCCCAGTGCCAGTATTACGAGCGTTAATAGTATTGACATCAA
AAAAAAAAAAGAACGGGTGTGTTGGGATCAAATGAGTGAAAAATGAAATT
GAAAATTGAAAATCGATGAAACTTATTAGGAACACTTACAAATTCGTTTT
GAACGGGTCCCGTGCCCCGGATTCGCGAGCGGAGGCGTGTCTAGCATCCT
GCAGCGGTGAGCGTGTGCAAGCAGCGCCGGTGGTGAATGTGTACGCTGAC
ACGCTACTCTGACCATCTGTTAGTTATTGGTTGACTGGTTACTGACGCAA
GAATGGCGGGAGCGTTGTGTTCTGCAAGCGGACGCAAGAAGGACAGAAGC
GCGACACGCCGAAACGGACCCACCGAAGTGTGGAATATATTGCAAACGCA
GCAGGAAGATGGTAGCTCTGTACACATCTCATGTAGACTACTGTGCTGTA
GTGTGACTGAACGTTTTGTAGACATAACCATGCACTATCCTGTACTACAG
TAATGTTTTCCACGTTTTTGGACCCTTTCATATTTGTGAATTCGTATCTA
ATAACATTAAAATGATGACACATTACGTACCTACGTGGAACGTGTAAAGA
ATTTTGACAGTTAGTTCTATTATTAGTACATGAAATGCCGGTTTGTGTGA
GATGCTCCGGCGTAGACTACATTATACTATATTGTCTGTAGACAACTAAG
GTATGACACAGTCGACTACTCAAGCGCTCGCCCGTGTACAAAAACGCGCG
CTAAGGGTCTGAGATTTGAATGGCCGACCGACAATAACACTACGAAGCTA
AATCGCTTACAATGCTGCACGAGCTAGACATTAGTTTTGCTTCACGTTTT
CATACTTTATTTAATACATACATATATCCTCTGCAACTTCTCTCACTGAC
ATGGCAGGCACAAGACATCCCATGCGAAGGCCTGGTAGTCGCTGCAGGAC
CAGGACGCATCCACCCCCTCACGGGCAACCTCATCCCCATGTGCGTAGAA
GCCGGGGACACTATCCTGTTTTCGAGGTGGAGCGGGCGCAAGGTGAGCCA
GGGTTTCGGCTGCTGCGGGCACCCCGACTTGACCCCTAAATAGCGCACAC
GCCACATCCGCTGTTGAGGTCGAAATATAAATCGTACAGCATACAAATTG
ATTCATGAATGCTCGGGGCTATTCACATAGCCTGGCCCGCGAACTCCGTA
AATCGCTTTGCGGTTGAGCGTGTGCGAAATAGTGGTCTTTTGTTATTGAC
TCGGCCTGTTAATAAGGAACAGATTCATAATGACCTGAGCCTAGGATGTT
TGAAAGAGTAAGAAATTCGTCCAAAAAAGAGGACCTGGACATCTACTACA
TGATAAGAAACAGCCAAAAAAGAAACAGGCAAAGTCTTACCACGAGCAGA
TAAGAAACACAGTACTGCTGCCCAGCCAGGAACAAAAAGAAACGGGCTAG
TAGGTCGCCAGCAGCCAGCATGGTACATCTTACAAGCCGAACATAATTGA
CGGCAAGTAGTAGTTGAGTGGTCGTTTCGTGACACCACCATGCAAGCCTC
AACGAGATCCTGGCGACAGTGCAAAAGACACCCTGTCAGCGCTGTTCTCC
AGTAAGGAATACGAAATAGGAAAGTACAGCTCCTCAGAACCTTCTCCAAA
CAAACAATAGGTAAGTAGGAAAACAACTGGAAGCGGGCAAAAAATTAAGA
CACTGAGCGTGGTCCCAAATTAACGGTTCTTCCTAGTGAGCCGGATCTGT
AAACCTCTAGTTTTGGCGCTTGTTCAGACCGATAACATTTTGTTGATCTG
TATGATACATTCAAAGCAGTCAACAAAATCTGTTGACCTACATTAACACC
TCTTTTGACCTGCGTTAAGATATACTTTGCCCCATGTGAAGGTCTTGCAT
CCTTTTGATGAGAGCTTGTTAGGGACAAAACAACCCATTCGGTGAGGTTC
CCGTGAGGGTCCCGGAATAACCCCTGCTTTTTTACGACTTCCTGCTACTA
CTAGCAGTATGTGTTATGAGCGAGAATCTCGTACTGTTGTTGGTTTATCT
GGCACATTCGAATCCGAGACCCTTGTGGGACCTCGTTCGTGTACGTCGAG
GCCCAAACTCTGTTGTTCTCCGTTTGTGTCGATAATCCCCTAGTTGGCGA
CGTTGATGCCATTTCGCAACTTGCTATACCTCAATCCTTCGGGGGCTCAC
ACCTCGAAGTCCTGTCTTCTGGTATCTGTTTTTTGCAATGCAGTATGCGT
TGCGTGCTTAATAATAGCAACAGAGGTCCCCTCTGAGAATGGTAATGGTT
GTCTCCTTGGTTTATGGCCTTCAGCTAATAGTTCCTCTGGTGGTCGATTT
GTCCAGGTGATACTTAGGGTTTTCGACACAAGGTTGCGTACCGACGGGGT
TAGCGTAGGCGGGCGGACATGAGAAGAACGCTGTGCTGCACGCGCCTTTT
TGCTGCAATTGTTGCTGATACTAAATGAACAGCCGCGAAGGATAATACTT
TACGTCAAATTACTGCAGCATAAGGTGGAAATTTCGAGTGGCCTCCACTA
ATGCATACTTCCTTACCGATGTATTTGTCTCACTGGCTGATCAAGTTTTC
GGTGCCGTGGTTTTCGTCATCGTCGCTGTCCGCTGTTTGTCACTTCCGTG
TGCAACAACGCTGTGGAAAAAAAGATCAAGTACAACGGGGAGGATCATAT
GTTCATCATGGATGATGACCTAGTGCTGGTCTACCGAGGAGAAGAGGTGC
TTAAAACGACTAGGGAGTGATACCCCCTTGTAGCCACAAGGGTAGCTACC
CTCTTTAGCGCGCGGGGGCCGGGGGGGGTGGAAAAAATTGTTCATGAAAG
CAGGCAAACGGCTATGCGTGCACAAAATCGTATGGAATTAGAACAAAAAA
ATAACACAAGTGTGAACGCGGTCAACACATTAGGGTAGCAACTCTCCGCC
AGAGAGTGTCATTATCCGAAAGTGACTGACGCTCCCTACATTATCAAATG
ACATACCGCGGGACGACTCGCCCAAAGAATTCCACTGAATACTCGAATCT
CGAATACTCGAAATTAACGAGATTCAGCGCTTTGCTGTCGCTCCGCGTAC
TATTCGTCTTATTGCCATCCTCCGTAAAACTGTGACGAATTCCCTACGTC
GTTCTTCGTGCTTAATTTTACGTCAAGGGGGAATCCCAAAGGTGCGCATT
GCCGCAATGGGGCCAACAACTCACCGGCGATTGCTGATTTTGGGATGTAA
AGTATTTGATACTTACCGAATTGCCACACAGCACACTCAGCCCCGCAAAC
GTAGTCCGTTTCTACTATTTTTTGGTCATACTCCATGAATTTTCCATGCG
CATTTTGTCGTAGTCCATGGATTCCCTCGTGCGGTCGCACGTGCGTGTCC
GTGTTTTTTTTCTTGCAGCTGACAGTGGACAGCTTAAAGATGGTGCGAGA
CCAGGTGCTAGTAGTGACCGAAAAGGGAGAGACAGAAACGGACAAGGGTA
TCGTCATTGCTGCTGCGGTGAGCGCGCCGGGTATCTACCCGATCACATTT
ATGGGGGGGCATGGTTTTTCGTTCCCGGTGAACTTGGCTTTGGCTCCTTC
ACGCGCACCTCTCTTTTTTACGTCGGATCTTCTTTACTGCAGAGGTATTT
GTGTATGAAATGGAGACGCTTTATTTCAGTCATGGATAGTAAGCCCTGTA
ATGGATTCTCTGAATGGTGCTCGAGGGGCTCAGGGGAAGCCTGTAGACAT
GCACTTGCTCCCCGTATTTTATGGGACTCACAGATGATCATTTGCTTGCA
TACAGTAGATACCCGCGAAAGCAAAACGCGCTTTTCCCAAGCTACGTCAT
TTTTGCCCGAAAACTACGCAGGCGCTCGTCGGGCCGCCCCTGAAAAAGAA
GTGTCGCTGGAAAGATTTTAAGACATCATCCCCCGGAAGAAACAAGTAGT
TGAAGGATTGGAGACGTGAAATTCGTTCACAATGAGCACGTTCATTTTAT
GTGCCCCTCGGGTCTTGTGTGACTGCCACGAATAATTGTGACACGAGTAG
ACAGGGATCGACACATGATTCACTCTGTGTGTCATCCCGCCCATTGTGAA
TATTCAGGCGTTCGTTTTTAATTTTCGACGCGAATGCTCCAACAAGTCGT
GTTGTCCGGGGGGGTGAACGGTGAAACATTCGTTGCGATGTTTCAAGCGT
CAGTCCGTGGCGTGTTCGTTTCATCTCTCGTGGAGGGAAAAACACGAATA
AACGCACGACTATGAGAAGATATCGGCGGGTAAAGAAATAAAACAAGAAA
CAACAAAAAAGGAAGAGCGCTGGGCTCCCATGGCATGCAAAATATGATTG
AGTTATCATGCACAGAAACGAAGTCGTCCCTATCATTGTTGTGTGTACGA
GCAGCGCTTGGTTCTGTTTTTCCTCCGTCATATCAGTACACGTTCTCCGC
TCCGCGTTCTTTTTTCAGTATGTTATACCGGTAGTGCAGCCTTAACTGCG
CCCGCTGTAGTCTGTTCTTACCATTCTCGTGCGCTTCCATGTATTAAACT
ATGTGGCACATACACGATGACTTCCTAGGCTGCATTTACGTAGTAGGTGA
TTTTTTTGTTTGCCTGCTTGTTTTTGTTTGCCTGCTTGTTTTTGTTTGTT
TGTTTTACTTTTGATTACCTTACTGATACTTAGAGCAGACGATGCCTCCA
AAGCTCTCTCGTATGTCGGCTATCTGACATCAGTATATCGGTATGTGCTG
TTTCCTTTCCAAGCGCTGTTATCAGTCCTTCTACTAGAGCTTGGTGGGGA
ACGAGGTGAGTCGCACGCCATATCATGGAAGGCATTCTGATGTTGTAATC
CATTATTTCAGCGCACTCCGAGAAGTGGTATCCGCCTTCGACGAATTCAC
ATCGGTTTGGTGGAAACCGTCACTCAGGCCGCATCTTACTCGGATCGCCA
GCTTTTTTGTCGGAAACTTGATTTTTGGACGTTGGCCGGCATTCTACTCC
GGGAAGACACCGTCATCGACGTCACATGCCTCGAGAGCCATGTTCGTTAC
TATGCGGAGAGGAAGGATTGCAGCCCCCAATTTTAGTTTTCTCTTGCCAA
AAAATTGAATGAGACAAAACAAAAAACAGCTGCCTCGGAAACTTGGGGTG
TTTTTTCACACGATTGTTGAAGGCGTTATTGAGCAAAGATATTCGATCTC
ACTCGGATTTTGATACATGGTGGTAGGAAGTACTTGGTTTTACTGTATGG
TGAAAATGAGGTTACCAACGCGCAACATATGTGGTGTCTGTAGTACGTAT
ATTATTGACTCGAGTATACAGTACCCACCTCCAATTTCTTTCGATTGATT
GTTACGGGCATACCTTTTTTCGTCTTTGCGTGCACATTTTAAAATTGTAT
TCTAATGTTATCCGTGCTGTCTGTCTTGTTGAAGTTGCTTGTCCTTGGCA
AACGTCTGCACCTGCTTTTGTCGCTGTTTTGGTGTAGTTGATGTGTAGAG
TCCTCTTATTTGAAGTAATTTTTCTGGGAACTGATGAGTACATAGAAAAC
AGTTGGTATTTGAGGCCAGTTTGTGCAGAATGGAGTCTTTTGTATGAGCA
TTGGAGCTATAGTTTCTGCCAACTTTGGTACCTGGGTTGTAGCACGAATG
AAAATTCTGTTGGGTGAAAAGGATTTTTTCCTTCCAGGTGCCAGTTGTCA
ATTTAAAAACTATTTCATGTTTACGTGCCCCCCCCCTCCCCTCCACAAAC
CCACAGACGGCATCCAAGGAGCGAAGTAGCCAGGGAACTGTAGTGGCGGT
CGGAGAAGGTCGTACGACAAGCGAAGGTGGAATCGCCGAGTGCCCATTCA
AGCCTGGTGACTCGGTGAAGTTTCTCGAGTATGCGCCAATAGAGATCAAG
GTACGTTTGGTAGCCCTTTCAGCACATTTTGTGGCGACGACCATGCACCG
TACAGCATTATACACAGGGGATACATTGCATCGGAGGTCCGTTTCGTTCC
TGGTCGTACATTAATCATGTTGATATTGGCGGTGTCTCCGCTGTTCTGCT
TTCGTGTCGCTCGATAAGGTATACCTGGTAGATAAACTAATACCTCCTAT
GTGCCACAAGTAAATGTGCCCATGTTTGGACTATGTAGGAGACACGGGAG
ATCTCCGACTTCGTTATTTTGTAGCGTTTTTGAAAACCTTGACAGTCTCA
AGGTCTGATGCAACCATCTGTCGTATTTTGTTTCCCGTCCATCGTGTTCA
TTATGGCGCAGAGGAGAAAGGCTGACAGCCCAGTTATTCACCGTTGCATT
CGACAAGCTTGTTGTCTTCCTCCAAAAAGGACGAGTGAAACATATGGAAA
CATCACGAAGTCACTCCATAGTGCACCAACTTTAAGCAGCGTGTTTTTTA
CATGAAACATAAATCAGATTTAATCTCGGGAATATAGTGAGCAATCTGAA
GCTTGTGAGATGCCAGGATTCAGGATTCGATGGGTGCCCTCCAACACTAG
TAGGTGTCCGTAGAGCTTATTTTGGGGTCTATCGAAGATGAAGCTGCCGT
TTGTTTTTCGGGACAAAAGAAAGAATATGAAAGGCTTGGGTATTCGATAC
AACATGCCGGAAAAGAATACTGTGCGGCACGGTTAGAAGGATCAAATATT
TGATATCGTATGTATGATTAAAAAGGAATCCCGAAATACTGACTACGTAG
ACTGTGCATCGAACGCAAAAAATACGTTGCATTTCTAACCGTGATCACAT
GTCCCTATGCGTGCTTACATACCCTGAAATATTCCTGCGGAAAGCTAACA
CATGGCCCCGAGTTGGTTTCTTTTTCTGCCCTTCAGGAACCGGAATCCGT
AACGGCTTAACAAAGATTTTCTAAAGACAAGTCGTGAATAATGGATATTG
ACCAATACGTCGACCGAAAGCTCAGCCAGGTTCTAGACAGTTCGTTAGTG
TATCTCGCTGCAAAAATGACGCGGTCATCCTTTTGTCCCTTAGGGGCTCT
TATATTGGATTTAGTATAGAGAAAGAACAGGCGAACACCGTATTTTTTCC
TAATAGCGAAAGAATAAACAAGTGCTCCATAGCTGGGTAAAGTCTTTAAA
AAAATGACTTCTGCGCTTGACATTCATTCTCAGATGCCGCGTTTGTTCCG
AAATGGTCTACTGTTGTAAGAGAGCTAAAATTGAATGAATATTAATAGTG
CAACCCACCTCGAAGGAATCAGTCGAAGGCACGGACTCAATTATATATAT
ATATATATATATATTATGTAGAGCTTTATATAACACGAACACTATCCAGT
TAATGTCTGATAAGTCAGGACCGCCAGTCATGCCTTGAAGTATTGTCTAT
CTGTCCGTTTGTCGCAGATTCGATACTACTACATGAGGCCGTGTCTTCCC
GACGAAATGAACAAGCGAAAATGAAGAATGATTTGTATTTTTAGCCATGA
AATAGTGTTTCGGTTTCATTGGGAAAGGCAAAATTAATTGTCCACACGAA
TATGCGACATATGTAACTTGGAAACGATACTATTCTCAGCGGTAGCCACA
CGTAGGGCGCCAACTTGCGACAGCGTCGGCATGGCCATGGGTATCAACTC
CCGCGATGTTAGGATAAAACTGCTCTCTGTCTTTTTATTGTCCTTGGTGT
ACCCCTGTCGATGGCGCACCGCACGTTCATTCACTGTCCCTCTTGGTCTC
TACATTCTGACCTTGGTCATTACACCGCCCAGTCACTTGTTCGTTTTCTT
GATGGCATTTGAACTCCACCGCGTTTTTGAAGAAGCCCAAAAAGACGTTT
GACAAGTCGCGGCGAGTGAAGAAAGTTCTTTCGAAAAAATATATTCCCTG
ATCTCTTCGTCCATGGACCGATCACCAAGCCAACCTTTCGATTAATCACA
GAGTTTAGAGTTTCTTTATTTTTTATTTTTTGCTAATTCATTTTACCTCA
ATTACACACCGTCTAAGGAAGCAAGTAGGTGTTTTTAAAGTCAAAGTGCA
CTTCGTGTGTATGTGTTTTTTGTCTGTATTTCTGTCTGCTCCTCTGTTTC
TTTATCTTGTGTGTCGCGACATGACTGGGCGCAGATCAAGGGAGAATTCT
ACGCTGTGGTTCGCATGGTCGATTGCATGGCTAAGTGGTAATGGAGAGAT
GGAGAGATCAAGCAAGCCGAGGAGACCTCTTTTCCGTAACCGCACCGGTG
CATGGCTTTTCTAAGCAGCCCTCAGGGTCGGCGGCGACCTCGAGTCATTT
CCCAATGGTTGCTTGTTGTGCCGCATATTTGAACGATATTTGACACCGAG
AATCAAGAGAGCAAGTGATGGTTGTCGCTGGGGGTATGGCGGGTGTACAC
TTTCTACATATATATCTTCTGGATATATTGCTCACCGTCTAGATCTCTTG
TTGTTTTGCGCAAACACACAGCGACACACACACGTTCTCGGCGATATATT
ACGCCTGTGATGCATTCATTGTTTGGCAACATGGGTGCACGGACGCATGC
TGGTTCCGTGAGAGATGCCGTCGTCGTTGTGAAACAGGCGTGTGAACGAC
GACCACCCACTTTTTCGGCGGATATTTTGGTTGGCAACCCCGCCTACCTT
GAATCGCATGCCTCGAAACGACGGTCACAAGAGGGCACTTGAAGTCCCCT
TCGAACGCTCCATCGCTTGGTGGCTGGAGACTGGCAAGAGTTACGTCGAC
GGTGCCGCAAATTTTACGTCCGTTGGGACTGTCAGCGTGCTTACTCATCT
TGAAGTTGTATCAGAAGCCAGTAACTTTTTCCCGGACCAACTTTCACGAC
CAGAGCTTGTGTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1271:10301..26763+

>mRNA_H-paniculata_contig1271.1699.1 ID=mRNA_H-paniculata_contig1271.1699.1|Name=mRNA_H-paniculata_contig1271.1699.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1692bp|location=Sequence derived from alignment at H-paniculata_contig1271:10301..26763+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGTGCTCTGGAAGGATGGATTTGGCGTGCGTAGCTTCGTTCCTTGC
TGCGTCGATGATTGTCTCGTCAAGCACAGCGTTTTTGCCCTCAGCGTCGC
TGAAAGCTTCCTCTGAATTTTCTCGACCAACAGCCGTACGATCTCAGCAG
AGCACTAGGGCGAAGGAGGTGCCTGCTGCCAGGAGAGGAGGATGAGGTGC
TCTGGAAGGATGGATTTGGCGTGCGTAGCTTCGTTCCTTGCTGCGTCGAT
GATTGTCTCGTCAAGCACAGCGTTTTTGCCCTCAGCGTCGCTGAAAGCTT
CCTCTGAATTTTCTCGACCAACAGCCGTACGATCTCAGCAGAGCACTAGG
GCGAAGGAGGTGCCTGCTGCCAGGAGAGGAGGGCCTCTGATGTCTGCTCC
GCCGCAGCTTGCCATCACCCTCGACGATGATGTCATCGAGCGACCACTAG
AGCCGGTGAGCAACTACATCTTGGTCAAGATGTTCGCCGCGCTATCGAAA
ACGGCGGGGGGGATAGTACTGCCCGATGAGGCCTCTGATGTCTGCTCCGC
CGCAGCTTGCCATCACCCTCGACGATGATGTCATCGAGCGACCACTAGAG
CCGGTGAGCAACTACATCTTGGTCAAGATGTTCGCCGCGCTATCGAAAAC
GGCGGGGGGGATAGTACTGCCCGATGAGGCACAAGACATCCCATGCGAAG
GCCTGGTAGTCGCTGCAGGACCAGGACGCATCCACCCCCTCACGGGCAAC
CTCATCCCCATGTGCGTAGAAGCCGGGGACACTATCCTGTTTTCGAGGTG
GAGCGGGCGCAAGGCACAAGACATCCCATGCGAAGGCCTGGTAGTCGCTG
CAGGACCAGGACGCATCCACCCCCTCACGGGCAACCTCATCCCCATGTGC
GTAGAAGCCGGGGACACTATCCTGTTTTCGAGGTGGAGCGGGCGCAAGAT
CAAGTACAACGGGGAGGATCATATGTTCATCATGGATGATGACCTAGTGC
TGGTCTACCGAGGAGAAGAGATCAAGTACAACGGGGAGGATCATATGTTC
ATCATGGATGATGACCTAGTGCTGGTCTACCGAGGAGAAGAGCTGACAGT
GGACAGCTTAAAGATGGTGCGAGACCAGGTGCTAGTAGTGACCGAAAAGG
GAGAGACAGAAACGGACAAGGGTATCGTCATTGCTGCTGCGCTGACAGTG
GACAGCTTAAAGATGGTGCGAGACCAGGTGCTAGTAGTGACCGAAAAGGG
AGAGACAGAAACGGACAAGGGTATCGTCATTGCTGCTGCGACGGCATCCA
AGGAGCGAAGTAGCCAGGGAACTGTAGTGGCGGTCGGAGAAGGTCGTACG
ACAAGCGAAGGTGGAATCGCCGAGTGCCCATTCAAGCCTGGTGACTCGGT
GAAGTTTCTCGAGTATGCGCCAATAGAGATCAAGACGGCATCCAAGGAGC
GAAGTAGCCAGGGAACTGTAGTGGCGGTCGGAGAAGGTCGTACGACAAGC
GAAGGTGGAATCGCCGAGTGCCCATTCAAGCCTGGTGACTCGGTGAAGTT
TCTCGAGTATGCGCCAATAGAGATCAAGATCAAGGGAGAATTCTACGCTG
TGGTTCGCATGGTCGATTGCATGGCTAAGTGGTAAATCAAGGGAGAATTC
TACGCTGTGGTTCGCATGGTCGATTGCATGGCTAAGTGGTAA
back to top