mRNA_H-paniculata_contig12703.1695.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12703.1695.1
Unique NamemRNA_H-paniculata_contig12703.1695.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A4Y9ZY34_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZY34_9AGAM)

HSP 1 Score: 93.2 bits (230), Expect = 5.810e-20
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVK 300
            IA   A KE  +LR  LG IG  C+ +T L  DN+SA+ +++  + H RTKHI VR+H +RE    G + L+YV TGDQ+AD+LTKGL + K
Sbjct: 1033 IAAAHAAKEATWLRTFLGEIGRPCKTATLLLMDNQSAMAIARNPAFHARTKHIDVRYHFLREKVEAGAINLQYVPTGDQVADVLTKGLVKAK 1124          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A0L7QKC3_9HYME (Copia protein n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QKC3_9HYME)

HSP 1 Score: 83.6 bits (205), Expect = 9.570e-19
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGL 288
            +++ EA KE +YLR  L ++GF  +    L+ DN+ AI L++    H RTKHI VR H +R+  R+  + LKYV TG+ +AD+LTKGL
Sbjct:    1 MSMSEATKEAIYLRRFLRTLGFESQSRIQLYCDNQGAIKLAENPVFHNRTKHIDVRHHFVRDALRDKAIELKYVPTGEMVADVLTKGL 88          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A401H2X4_9APHY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H2X4_9APHY)

HSP 1 Score: 85.9 bits (211), Expect = 6.660e-18
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVKFQ 306
            +A     KE V+LR  L  IG   +G T L  DN+SAI LSK ++ H RTKHI VR+H IRE    G +  +YV TG+Q+AD+LTKGL R K +
Sbjct:  210 MAGAHGTKEAVWLRTFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHE 303          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A8H7NTQ9_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Postia placenta TaxID=104341 RepID=A0A8H7NTQ9_9APHY)

HSP 1 Score: 87.0 bits (214), Expect = 8.420e-18
Identity = 46/94 (48.94%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVKFQ 306
            +A     KE ++LR  L  IG    GST L  DN+SAI L+K    H RTKHI VR+H IRE    G +  +YV TG+Q+AD+LTKGL R K +
Sbjct: 1030 MAGAHGTKEAIWLRAFLSEIGQAISGSTPLLIDNQSAIALAKNPEFHNRTKHIAVRYHFIREKYDSGDITPEYVPTGNQVADVLTKGLAREKHE 1123          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A4Y2H1X2_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2H1X2_ARAVE)

HSP 1 Score: 85.5 bits (210), Expect = 1.490e-17
Identity = 48/96 (50.00%), Postives = 62/96 (64.58%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFG--CRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVKFQ 306
            IA   AVKE ++LR+LL  +     C    TLF DN+SAI L K    H RTKHI VR+H IRE   +G + +KYV++ +QLADI TK L +VKF+
Sbjct:  249 IATSTAVKEVLWLRQLLQDVSEIELCDEGITLFVDNQSAIKLIKNPVFHKRTKHIDVRYHFIREKCDDGSVNIKYVKSEEQLADIFTKALPKVKFE 344          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A1X7SFX4_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SFX4_AMPQE)

HSP 1 Score: 82.8 bits (203), Expect = 1.580e-17
Identity = 40/94 (42.55%), Postives = 58/94 (61.70%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVKFQ 306
            +A+    +E V++REL   +     G TT+FEDN+SAI+++K    H R KHIG+++H IRE      + +KY  T D +ADI TKGL   KF+
Sbjct:   78 MALASTAQEAVWMRELNADMNNKPNGPTTIFEDNQSAISMAKNPQFHGRAKHIGIKYHFIREQVSTESVQIKYCRTEDMVADIFTKGLTHEKFE 171          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A4Y2TYG7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2TYG7_ARAVE)

HSP 1 Score: 83.6 bits (205), Expect = 1.830e-17
Identity = 48/96 (50.00%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFG--CRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVKFQ 306
            IA   AVKE  +LR+LL  +  G  C    TLF DN+SAI L K    H RTKHI VR+H I E   +G + +KYV+  +QLADI TK L +VKF+
Sbjct:  130 IAASIAVKEVSWLRQLLQDVSEGELCDEGITLFVDNQSAIKLIKNPVFHKRTKHIDVRYHFIGEKCDDGSVNIKYVKYEEQLADIFTKALPKVKFE 225          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A0L6WME8_9AGAR (Copia protein n=2 Tax=Termitomyces sp. J132 TaxID=1306850 RepID=A0A0L6WME8_9AGAR)

HSP 1 Score: 80.1 bits (196), Expect = 1.880e-17
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   37 EAVKETVYLRELLGSIGFGCRGS-TTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVKF 303
            E+ +E ++LR LL +IG+    + TT+F DNK+AI+LS+  +AH R KH  +++H IRE +  G +A+KYV T D +AD+ TK L +  F
Sbjct:    5 ESTQECIWLRMLLKAIGWDFTSNPTTMFCDNKAAISLSEDPTAHARVKHFDIKYHFIREHAHNGEIAIKYVNTRDNIADMFTKPLPKPLF 94          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 85.9 bits (211), Expect = 2.140e-17
Identity = 47/94 (50.00%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVKFQ 306
            +A     KE V+LR  L  IG   +G T L  DN+SAI LSK ++ H RTKHI VR+H IRE    G +  +YV TG+Q+AD+LTKGL R K +
Sbjct: 1010 MAGAHGTKEAVWLRAFLSEIGQVQKGPTPLLIDNQSAIALSKNAAFHERTKHIAVRYHFIREKYDSGEIEPEYVPTGNQVADVLTKGLPREKHE 1103          
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Match: A0A6G0RP41_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RP41_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.400e-17
Identity = 40/88 (45.45%), Postives = 58/88 (65.91%), Query Frame = 1
Query:   25 IAVGEAVKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSKGSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGL 288
            +A+ + VKE V++R LL  IG    G+T ++EDN+ A+ L+K      RTKHI +R+H IRE      + L+YV+T +QLAD +TKGL
Sbjct:    1 MALSDCVKECVWMRRLLKDIGAEQVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSNEVELEYVDTKNQLADFMTKGL 88          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12703.1695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4Y9ZY34_9AGAM5.810e-2048.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A0L7QKC3_9HYME9.570e-1945.45Copia protein n=1 Tax=Habropoda laboriosa TaxID=59... [more]
A0A401H2X4_9APHY6.660e-1850.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A8H7NTQ9_9APHY8.420e-1848.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A4Y2H1X2_ARAVE1.490e-1750.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A1X7SFX4_AMPQE1.580e-1742.55Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
A0A4Y2TYG7_ARAVE1.830e-1750.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A0L6WME8_9AGAR1.880e-1744.44Copia protein n=2 Tax=Termitomyces sp. J132 TaxID=... [more]
A0A401H123_9APHY2.140e-1750.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A6G0RP41_9STRA2.400e-1745.45Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12703contigH-paniculata_contig12703:1632..1937 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score89.0
Seed ortholog evalue1.4e-15
Seed eggNOG ortholog3641.EOY12702
KEGG koko:K13459
KEGG Pathwayko04626,map04626
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005623,GO:0005886,GO:0007154,GO:0007165,GO:0008150,GO:0009987,GO:0016020,GO:0023052,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0071944
EggNOG free text desc.Belongs to the disease resistance NB-LRR family
EggNOG OGs37T06@33090,COG2801@1,KOG0017@2759,KOG4658@1,KOG4658@2759
COG Functional cat.T
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Exons1
Model size306
Cds size306
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.3748074-CDS-H-paniculata_contig12703:1631..19371622928992.3748074-CDS-H-paniculata_contig12703:1631..1937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12703 1632..1937 -
1691480693.968687-CDS-H-paniculata_contig12703:1631..19371691480693.968687-CDS-H-paniculata_contig12703:1631..1937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12703 1632..1937 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12703.1695.1prot_H-paniculata_contig12703.1695.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12703 1632..1937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12703.1695.1

>prot_H-paniculata_contig12703.1695.1 ID=prot_H-paniculata_contig12703.1695.1|Name=mRNA_H-paniculata_contig12703.1695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MVQYRGRDIAVGEAVKETVYLRELLGSIGFGCRGSTTLFEDNKSAINLSK
GSSAHCRTKHIGVRWHGIREWSREGILALKYVETGDQLADILTKGLRRVK
FQ
back to top

mRNA from alignment at H-paniculata_contig12703:1632..1937-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12703.1695.1 ID=mRNA_H-paniculata_contig12703.1695.1|Name=mRNA_H-paniculata_contig12703.1695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig12703:1632..1937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCAGTACAGAGGCAGAGACATTGCAGTAGGAGAAGCGGTAAAGGA GACGGTATATCTTCGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGG GGAGCACGACATTGTTTGAGGACAATAAATCAGCTATCAATCTCAGTAAA GGATCTAGCGCACACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGG AATTCGAGAGTGGAGTCGGGAAGGAATATTGGCGTTGAAATACGTAGAGA CCGGCGACCAGCTTGCTGACATTTTAACGAAAGGATTGAGAAGGGTAAAG TTTCAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12703:1632..1937-

>mRNA_H-paniculata_contig12703.1695.1 ID=mRNA_H-paniculata_contig12703.1695.1|Name=mRNA_H-paniculata_contig12703.1695.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig12703:1632..1937- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTCAGTACAGAGGCAGAGACATTGCAGTAGGAGAAGCGGTAAAGGA
GACGGTATATCTTCGGGAGTTACTAGGATCGATAGGTTTCGGATGCAGGG
GGAGCACGACATTGTTTGAGGACAATAAATCAGCTATCAATCTCAGTAAA
GGATCTAGCGCACACTGCAGGACAAAGCACATCGGAGTGCGCTGGCACGG
AATTCGAGAGTGGAGTCGGGAAGGAATATTGGCGTTGAAATACGTAGAGA
CCGGCGACCAGCTTGCTGACATTTTAACGAAAGGATTGAGAAGGGTAAAG
TTTCAGATGGTTCAGTACAGAGGCAGAGACATTGCAGTAGGAGAAGCGGT
AAAGGAGACGGTATATCTTCGGGAGTTACTAGGATCGATAGGTTTCGGAT
GCAGGGGGAGCACGACATTGTTTGAGGACAATAAATCAGCTATCAATCTC
AGTAAAGGATCTAGCGCACACTGCAGGACAAAGCACATCGGAGTGCGCTG
GCACGGAATTCGAGAGTGGAGTCGGGAAGGAATATTGGCGTTGAAATACG
TAGAGACCGGCGACCAGCTTGCTGACATTTTAACGAAAGGATTGAGAAGG
GTAAAGTTTCAG
back to top