mRNA_H-paniculata_contig12684.1683.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12684.1683.1
Unique NamemRNA_H-paniculata_contig12684.1683.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12684.1683.1 vs. uniprot
Match: D8LB73_ECTSI (Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB73_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 6.550e-9
Identity = 26/50 (52.00%), Postives = 33/50 (66.00%), Query Frame = 2 
Query:  101 WSVVDGLLETRTYNGTGNNVDNPLWGAANRAQIRSVASADYTDGISATPG 250
            W  + G  E RTYNGTGNN+D P WG+  + Q+RS+  A Y DG+S  PG
Sbjct:   35 WDTLVGENERRTYNGTGNNLDQPEWGSVGQRQLRSMTEASYGDGVSEPPG 84
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12684.1683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB73_ECTSI6.550e-952.00Peroxinectin n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12684contigH-paniculata_contig12684:4651..6275 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size257
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928990.6347094-CDS-H-paniculata_contig12684:4650..47091622928990.6347094-CDS-H-paniculata_contig12684:4650..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12684 4651..4709 -
1691480693.162743-CDS-H-paniculata_contig12684:4650..47091691480693.162743-CDS-H-paniculata_contig12684:4650..4709Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12684 4651..4709 -
1622928990.6475368-CDS-H-paniculata_contig12684:6079..62751622928990.6475368-CDS-H-paniculata_contig12684:6079..6275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12684 6080..6275 -
1691480693.1741478-CDS-H-paniculata_contig12684:6079..62751691480693.1741478-CDS-H-paniculata_contig12684:6079..6275Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12684 6080..6275 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12684.1683.1prot_H-paniculata_contig12684.1683.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12684 4651..6275 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12684.1683.1

>prot_H-paniculata_contig12684.1683.1 ID=prot_H-paniculata_contig12684.1683.1|Name=mRNA_H-paniculata_contig12684.1683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
RLIHVVPSTAFSSPEMVARASRPSLAIGLIIPVVECCRRLVRDEDLQRHG
EQRRQSTLGRGQQGSDPVRGVCGLHRWNFRNSGG*
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mRNA from alignment at H-paniculata_contig12684:4651..6275-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12684.1683.1 ID=mRNA_H-paniculata_contig12684.1683.1|Name=mRNA_H-paniculata_contig12684.1683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1625bp|location=Sequence derived from alignment at H-paniculata_contig12684:4651..6275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGATCCATGTCGTGCCGTCTACTGCCTTTTCCTCTCCGGAGATGGT
TGCCCGCGCTTCCCGTCCTTCTCTTGCTATTGGCCTCATCATCCCGGTGG
TGGAGTGTTGTCGACGGCTTGTTAGAGACGAGGACCTACAACGGCACGGG
GAACAACGTCGACAATCCACTCTGGGGCGCGGCCAACAGGGCTCAGGTAT
CTTGTTATTTTAATACGGTAATGTTGGCTGTGGTCCTTTAGGAAAGTGTT
TTCAACTCTTTAGTCGAGTAATTAAAAAAAACGAATCTTGAAGGGTGTGG
TGCCTCCATGCGGGCTTAATGAACTAGTGTACCAGGGCAACGCGTCGTTT
TGCGTGGATCATCTTTTAATATATACATACTGCGAATATATGAAATCAAG
CAGTACATATATATATATATATATATATATATATATATATATATACATAA
GTATGCTGAAACACTGACCATGCCATACCGTATGAACGCGAAGTGTTCAC
TGAACAAGATCCGAACAAAGCCACGAACAAACTGCAAGTCTACGCCTCAC
AACACAACAGGTAAAGTCAGAACAGGTAAAACCTGCGCGAAGTGTCCAAC
ATTTGAATGATTGGCTCAACACAACACTGCAAAGTTAGCTTGTAATGCTG
CACGAGCCAGACGTGAATGCTTTTCTACCTTTCTTCACTTTTATATTTTA
TTTTATGTATTAGTACGAGGACGAAACACGTACTACAGTGCTATTTCACC
GTGACTGTATGATTTGTAGAATATGAAAGTAGCTGGAGAGAAAGGAAGTC
AGATCTGCTTTCAAAGCTCGTCGGTGAGAATTTCTGAGGAAATATATATA
CTGTGATGGTTTACGCTCTCTCTTGGCGTTCCGACCCCAGCTCACCAAAC
ACCGAAATCTAACGGTAACCCCAGCCGCAATGCCTGCTTCATGCTCTATA
AGAAGTGTGCAAGGCACATGCTCAATTCGGCGCCATAAGCACCATGGCCG
AGTTACGTATTTTTTGGGCGTGCGTCAGAACTGTTGCCGGCCAGAACATC
CTGAAAACGTTGTGGACGTCGCTTTTTCCCCCACCCAATCAAACATTTTT
ACTTCACGGGGAGTACTGTGCGTAGCCCCAGACTCGGCATGATCATAACG
GAATCAGCACTCGAAACGAGCGCCCAGCATCAGGGGTTGATCAGACACCA
TTGCACGAGAGAAGGAGCCTTAGAACAGACATGAAAGTTATATTTGTGGG
CTATAATTATTATCTTTAAGAAAAACGACAAGCTATTACCGTTTGATCCA
AGCCAGAGACCCAGTACTATACTGTAGTGTAGTATAGGGTAGTATACTGC
ACTGTTAGTAGTGATAAAACCATTTCTTTCAAATGCTTTGAAATTATGAA
CTTCCTATTGAGAAATTTCGCGATGTTTCTCCAAAACAGTCATTCGACTG
ACACAATTCGGCTCCGCGCCAACTTCGCCAGGCAGGGCTGCCGCTGACTC
AGCGCCTCCGTGGATGTGTTATGTGTGCTTGCCTTGCCGCCGCTTGGGTC
GTTTTTCATAAAAAAGATCCGGTCCGTGGCGTCTGCGGATTACACCGATG
GAATTTCCGCAACTCCGGGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12684:4651..6275-

>mRNA_H-paniculata_contig12684.1683.1 ID=mRNA_H-paniculata_contig12684.1683.1|Name=mRNA_H-paniculata_contig12684.1683.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig12684:4651..6275- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTGATCCATGTCGTGCCGTCTACTGCCTTTTCCTCTCCGGAGATGGT
TGCCCGCGCTTCCCGTCCTTCTCTTGCTATTGGCCTCATCATCCCGGTGG
TGGAGTGTTGTCGACGGCTTGTTAGAGACGAGGACCTACAACGGCACGGG
GAACAACGTCGACAATCCACTCTGGGGCGCGGCCAACAGGGCTCAGAGGT
TGATCCATGTCGTGCCGTCTACTGCCTTTTCCTCTCCGGAGATGGTTGCC
CGCGCTTCCCGTCCTTCTCTTGCTATTGGCCTCATCATCCCGGTGGTGGA
GTGTTGTCGACGGCTTGTTAGAGACGAGGACCTACAACGGCACGGGGAAC
AACGTCGACAATCCACTCTGGGGCGCGGCCAACAGGGCTCAGATCCGGTC
CGTGGCGTCTGCGGATTACACCGATGGAATTTCCGCAACTCCGGGGGGTG
AATCCGGTCCGTGGCGTCTGCGGATTACACCGATGGAATTTCCGCAACTC
CGGGGGGTGA
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