mRNA_H-paniculata_contig12669.1671.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12669.1671.1
Unique NamemRNA_H-paniculata_contig12669.1671.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12669.1671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12669contigH-paniculata_contig12669:5531..6195 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size665
Cds size411
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12669.1671.1prot_H-paniculata_contig12669.1671.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12669 5603..6013 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928988.8868282-UTR-H-paniculata_contig12669:5530..56021622928988.8868282-UTR-H-paniculata_contig12669:5530..5602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12669 5531..5602 +
1691480692.5721455-UTR-H-paniculata_contig12669:5530..56021691480692.5721455-UTR-H-paniculata_contig12669:5530..5602Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12669 5531..5602 +
1622928989.2247434-UTR-H-paniculata_contig12669:6013..61951622928989.2247434-UTR-H-paniculata_contig12669:6013..6195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12669 6014..6195 +
1691480692.5914252-UTR-H-paniculata_contig12669:6013..61951691480692.5914252-UTR-H-paniculata_contig12669:6013..6195Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12669 6014..6195 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928988.9702003-CDS-H-paniculata_contig12669:5602..60131622928988.9702003-CDS-H-paniculata_contig12669:5602..6013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12669 5603..6013 +
1691480692.5833104-CDS-H-paniculata_contig12669:5602..60131691480692.5833104-CDS-H-paniculata_contig12669:5602..6013Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12669 5603..6013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12669.1671.1

>prot_H-paniculata_contig12669.1671.1 ID=prot_H-paniculata_contig12669.1671.1|Name=mRNA_H-paniculata_contig12669.1671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=137bp
MPPCSSASARIFVPGAVDSSTPLQYLQMSHVTMLQGQPLALHHFGTSRCP
LQQPRHTYLRPKDTRQPITTATRLIYLQVPLPSSRAARTLLPVISYTPGL
LKNFQLPPSATLTHILEYQGHPQALPHAKRDVDCNV*
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mRNA from alignment at H-paniculata_contig12669:5531..6195+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12669.1671.1 ID=mRNA_H-paniculata_contig12669.1671.1|Name=mRNA_H-paniculata_contig12669.1671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=665bp|location=Sequence derived from alignment at H-paniculata_contig12669:5531..6195+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTAGCAGCAAGGGTATACGTGGCTTCGTCCCGAGAACAACCGTTAGCCC
TATACCTCTTCAGCACCTGCGGATGCCCCCGTGCAGCAGCGCTAGTGCAC
GTATATTCGTCCCAGGGGCAGTCGATAGCTCGACACCACTTCAGTACCTC
CAGATGTCACACGTGACTATGTTGCAAGGGCAACCGTTGGCCCTGCACCA
CTTCGGCACCTCTAGATGCCCCCTTCAGCAGCCACGGCATACGTACCTTC
GTCCCAAGGACACCCGTCAGCCCATCACCACTGCTACAAGACTAATTTAC
CTTCAGGTGCCCCTGCCGAGCAGCCGAGCTGCACGTACCCTCCTACCAGT
CATATCCTACACCCCGGGCCTACTGAAGAACTTCCAGTTACCACCTTCTG
CAACCCTCACGCATATCTTGGAGTACCAAGGACACCCACAAGCTTTACCG
CATGCCAAACGCGATGTTGATTGTAACGTATGACCCACAGGTTCTCCTCG
GTCGATCGCCCCAGGCCAATTTTTAGTGCTTAGATAAACCGGCCCCGAAT
AGATACCCATCGCCGCTAGATATTATCACCTCGTGCTGAAATACGTCGGC
ATGATCTATCGGGAAATTTCTGCCCTTAAATTTCGGTACCTCCCCTCCGC
CTGCAGCACCACTCT
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Coding sequence (CDS) from alignment at H-paniculata_contig12669:5531..6195+

>mRNA_H-paniculata_contig12669.1671.1 ID=mRNA_H-paniculata_contig12669.1671.1|Name=mRNA_H-paniculata_contig12669.1671.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at H-paniculata_contig12669:5531..6195+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCCCCGTGCAGCAGCGCTAGTGCACGTATATTCGTCCCAGGGGCAGT
CGATAGCTCGACACCACTTCAGTACCTCCAGATGTCACACGTGACTATGT
TGCAAGGGCAACCGTTGGCCCTGCACCACTTCGGCACCTCTAGATGCCCC
CTTCAGCAGCCACGGCATACGTACCTTCGTCCCAAGGACACCCGTCAGCC
CATCACCACTGCTACAAGACTAATTTACCTTCAGGTGCCCCTGCCGAGCA
GCCGAGCTGCACGTACCCTCCTACCAGTCATATCCTACACCCCGGGCCTA
CTGAAGAACTTCCAGTTACCACCTTCTGCAACCCTCACGCATATCTTGGA
GTACCAAGGACACCCACAAGCTTTACCGCATGCCAAACGCGATGTTGATT
GTAACGTATGAATGCCCCCGTGCAGCAGCGCTAGTGCACGTATATTCGTC
CCAGGGGCAGTCGATAGCTCGACACCACTTCAGTACCTCCAGATGTCACA
CGTGACTATGTTGCAAGGGCAACCGTTGGCCCTGCACCACTTCGGCACCT
CTAGATGCCCCCTTCAGCAGCCACGGCATACGTACCTTCGTCCCAAGGAC
ACCCGTCAGCCCATCACCACTGCTACAAGACTAATTTACCTTCAGGTGCC
CCTGCCGAGCAGCCGAGCTGCACGTACCCTCCTACCAGTCATATCCTACA
CCCCGGGCCTACTGAAGAACTTCCAGTTACCACCTTCTGCAACCCTCACG
CATATCTTGGAGTACCAAGGACACCCACAAGCTTTACCGCATGCCAAACG
CGATGTTGATTGTAACGTATGA
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