mRNA_H-paniculata_contig12666.1669.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12666.1669.1
Unique NamemRNA_H-paniculata_contig12666.1669.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: D8LHJ8_ECTSI (CHROMODOMAIN HELICASE DNA BINDING n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ8_ECTSI)

HSP 1 Score: 421 bits (1083), Expect = 3.350e-132
Identity = 213/247 (86.23%), Postives = 232/247 (93.93%), Query Frame = 1
Query:    1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGK-RAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            +GRR WK TVVVTTPELC++K+VS LLGRK+ WD LVVDEAHRLKS RSKLNV LKE F+FD+TLLLTGTPLQNNTEELWTLLNLVDAPKFR+K+ FV +YGDLQRAEDV++LQE IKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNT+FLLQGK RAQDGPSLMNLAM+LRKCCNHPYLITGVEDAVR+QMG  G DK+HLVK+SGKLVLLDKLLPRLK+QGHRVLLFSQFK+
Sbjct:  931 KGRRLWKSTVVVTTPELCIRKEVSSLLGRKVRWDALVVDEAHRLKSSRSKLNVVLKESFTFDSTLLLTGTPLQNNTEELWTLLNLVDAPKFRNKDQFVEDYGDLQRAEDVSRLQENIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTTFLLQGKKRAQDGPSLMNLAMQLRKCCNHPYLITGVEDAVRVQMGDSGEDKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKI 1177          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: D8LDG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG9_ECTSI)

HSP 1 Score: 375 bits (963), Expect = 4.530e-117
Identity = 190/247 (76.92%), Postives = 220/247 (89.07%), Query Frame = 1
Query:    1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKR-AQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            +G+R WK TVV+TTPELC++KDV  LL R+I WDVLVVDEAHRLK+  S+LNV LK+ ++F+++LLLTGTPLQNNTEELWTLLNLVD PKFR ++GFV +YGDLQ AEDV++LQE IKPYLLRRMKE VEKAVPPKEE IIEVELTEIQKQYYRAIY++NT+FLLQGK+ A+D PSLMNLAM+LRKCCNHP+LITGVED V  Q+GG    K+HLVK+SGKLVLLDKLLPRLK QGHRVLLFSQFK+
Sbjct:  521 KGKRVWKSTVVITTPELCIRKDVKTLLQRRIAWDVLVVDEAHRLKNSASRLNVVLKD-YTFESSLLLTGTPLQNNTEELWTLLNLVDEPKFRDQQGFVEKYGDLQEAEDVSELQEAIKPYLLRRMKEGVEKAVPPKEEIIIEVELTEIQKQYYRAIYDRNTTFLLQGKKQAKDAPSLMNLAMQLRKCCNHPFLITGVEDDVSQQLGGNKTSKEHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFKI 766          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: A0A6H5JB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB56_9PHAE)

HSP 1 Score: 347 bits (891), Expect = 2.160e-106
Identity = 182/247 (73.68%), Postives = 198/247 (80.16%), Query Frame = 1
Query:    1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGK-RAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            +GRR WK TVVVTTPELC++K+VS LLGRKIHWD LVVDEAHRLKS RSKLNVALKE F+FD+TLLLTGTPLQNNTEELWTLLNLVDAPKFR+K+ FV +YGDLQ                                     VELTEIQKQYYRAIYEQNT+FLLQGK RAQDGPSLMNLAM+LRKCCNHPYLITGVEDAVR+QMG  G DK+HLVK+SGKLVLLDKLLPRLK+QGHRVLLFSQFK+
Sbjct:  619 KGRRLWKSTVVVTTPELCIRKEVSSLLGRKIHWDALVVDEAHRLKSSRSKLNVALKESFTFDSTLLLTGTPLQNNTEELWTLLNLVDAPKFRNKDQFVEDYGDLQ-------------------------------------VELTEIQKQYYRAIYEQNTTFLLQGKKRAQDGPSLMNLAMQLRKCCNHPYLITGVEDAVRVQMGDSGEDKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKI 828          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: A0A6H5KR34_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR34_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 7.980e-92
Identity = 175/308 (56.82%), Postives = 206/308 (66.88%), Query Frame = 1
Query:    1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDL---------------------------------------------------------------QRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKR-AQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGGDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFK 732
            +G+R WK TVV+T+P+LC++KDV  LL  KI WDVLVVD+AHRLK+  S+LNV LK+ ++ +++LLLTGTPLQNNT+ELWTLLNLVD PKFR + G V +YGDL                                                                 AEDV++LQE IK YLLRRMKEDVEKAV PKEE IIEVELTEIQKQYYRAIY++NT+FLLQGK+ A+D PSLMNLAM+LRKC NHPYLIT +    R+Q       +HLVK+SGKLVLLDKLLPRLK QGHRVLLFSQFK
Sbjct:  467 KGKRVWKSTVVITSPKLCIRKDVKALLQCKITWDVLVVDKAHRLKNSASRLNVVLKD-YTIESSLLLTGTPLQNNTKELWTLLNLVDQPKFRDQRGVVEKYGDLPVRQRHRVLDVQCSVRFMDKVQIFDISALLLFLQRLARGPSPEIPALNKKLYTQVIQPGANELSEAEDVSELQEEIKSYLLRRMKEDVEKAVLPKEEIIIEVELTEIQKQYYRAIYDRNTTFLLQGKKQAKDAPSLMNLAMQLRKCYNHPYLITRIFS--RLQ-------EHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFK 764          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: W7TY28_9STRA (Myb domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TY28_9STRA)

HSP 1 Score: 284 bits (727), Expect = 1.820e-91
Identity = 151/250 (60.40%), Postives = 183/250 (73.20%), Query Frame = 1
Query:    1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-----DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            + R P K  V++TTPE+C+  D S L+   + W +LVVDEAHRLK+  S+L++ L+ERF + + LLLTGTPLQN+  EL+ LL+ VD   F   E F   YG+LQ    +  LQE I+PYLLRRMKEDVEK +PPKEETII+VELT +QKQYYRAIYE+N  FLL G++A DGPSLMNL MELRKCCNHP+L  GVE  +R      G     D D LV+YSGKLVLLDKLLPRL+  GHRVLLFSQFK+
Sbjct:   67 EWRFPQKFQVLITTPEMCLAADASFLMD--LEWTLLVVDEAHRLKNTHSRLSLTLRERFHYPSALLLTGTPLQNDLPELFCLLSFVDPRAFSDLERFEAAYGNLQDESSLTSLQEAIRPYLLRRMKEDVEKGLPPKEETIIDVELTGVQKQYYRAIYEKNVEFLLGGRKAVDGPSLMNLCMELRKCCNHPFLNKGVELDIRSHAEATGKVYTSDADLLVQYSGKLVLLDKLLPRLQANGHRVLLFSQFKI 314          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: B5YP65_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YP65_THAPS)

HSP 1 Score: 268 bits (686), Expect = 3.240e-86
Identity = 133/216 (61.57%), Postives = 171/216 (79.17%), Query Frame = 1
Query:   91 IHWDVLVVDEAHRLKSDRSKLNVALKE-RFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGGDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            I W+++VVDEAHRLK+  SKL   L++ RF F+  LLLTGTP+QNN +ELWTLLN ++   F   + F+ +YGD++  E V++L E I+P++LRR+KEDVEK+VPPKEET+IEVELT +QKQYYRA+YE+N  FL +GK+  DGPS+ NLAM+LRKCCNHP+L+TGVE  VR+Q       D +V+ SGKLVLLDKLLPRLK  GHR+LLFSQFK+
Sbjct:   13 IDWEIMVVDEAHRLKNHNSKLATNLRDDRFRFNQCLLLTGTPIQNNMQELWTLLNFINPDGFEDVDEFMEQYGDIRSKEKVDELHETIRPFILRRLKEDVEKSVPPKEETLIEVELTVLQKQYYRALYEKNLKFLHRGKKPLDGPSINNLAMQLRKCCNHPFLLTGVESEVRLQQPNKEIVDLMVEASGKLVLLDKLLPRLKADGHRILLFSQFKI 228          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: A0A7S4JUU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JUU9_9STRA)

HSP 1 Score: 285 bits (728), Expect = 3.820e-86
Identity = 149/246 (60.57%), Postives = 192/246 (78.05%), Query Frame = 1
Query:   10 RPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKE-RFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKR-AQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGG--GDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            + W  TVVVTTPE+ V  D S L   K  W++LVVDEAHRLK+  SKL V L++ RFSF +TLLLTGTP+QNN  E+WTLLN+VD  +F S + F+  +GD++  + +++L E+I+PY+LRR+KEDVEK+VPPKEET+IEVELT +QKQYYRA+YE+N  FL + K+ A DGPS+ NLAM+LRKCCNHP+L+ GVE+ V+ Q   G   + D LVK SGKLVLLDKLLP+L + GHRVL+FSQFK+
Sbjct:  286 KTWMVTVVVTTPEMLVTDDYSELTSVK--WELLVVDEAHRLKNHSSKLAVNLRDDRFSFKSTLLLTGTPIQNNMAEMWTLLNVVDPKRFDSVDEFLERFGDIKSKDRLDELHEQIRPYILRRLKEDVEKSVPPKEETLIEVELTVLQKQYYRALYEKNVQFLHRNKKKALDGPSINNLAMQLRKCCNHPFLLKGVEEEVKAQDKAGTTSEADFLVKSSGKLVLLDKLLPKLSDGGHRVLIFSQFKI 529          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: K0SJP8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJP8_THAOC)

HSP 1 Score: 284 bits (727), Expect = 2.240e-84
Identity = 146/244 (59.84%), Postives = 185/244 (75.82%), Query Frame = 1
Query:    7 RRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALK-ERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGGDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            ++ W   VV+TTPE+ +  D   L  + I W+++VVDEAHRLK+ +SKL   L+ ERF F+  LLLTGTP+QNN +ELWTLLN V+   F S   F+++YGD++  E V++L E I+P++LRR+KEDVEK+VPPKEET+IEVELT +QKQYYRA+YE+N  FL + K+A DGPSL NLAM+LRKCCNHP+L+TGVE  VR Q         LV  SGKLVLLDKLLPRLK  GHRVL+FSQFK+
Sbjct:  506 QKQWMVEVVITTPEIMIASDWPEL--KAIEWEIIVVDEAHRLKNHQSKLAQNLRDERFVFNHALLLTGTPIQNNMQELWTLLNFVEPDTFDSLSDFLDDYGDIKSKEKVDELHESIRPFILRRLKEDVEKSVPPKEETLIEVELTVLQKQYYRALYEKNLKFLHKNKKAIDGPSLNNLAMQLRKCCNHPFLLTGVEQEVRQQNPSADVTQSLVNASGKLVLLDKLLPRLKADGHRVLIFSQFKI 747          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: K3W860_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W860_GLOUD)

HSP 1 Score: 278 bits (710), Expect = 3.530e-83
Identity = 145/253 (57.31%), Postives = 184/253 (72.73%), Query Frame = 1
Query:    7 RRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDA--VRMQMGGGGDKDHL--------VKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            R  ++  V++TTPE+C   D S L   +++W VLVVDEAHRLK+  SKL+  + + F +D  LLLTGTPLQNN EELWTLLN +D  +F S E F+  +G+L+    V +L   +KP+LLRRMKEDVEK++ PKEETI+EVELT +QKQYYRAI+EQNT FL +G++    PSLMN+AMELRKCCNHP+LI G E+   +R+Q   G  ++ L        V  SGKLVLLDKLLPRLKE GHRVL+FSQFK+
Sbjct:  412 RDQYRFDVLITTPEMCGTADFSKLT--RVNWQVLVVDEAHRLKNKSSKLSSLIHKNFKYDRILLLTGTPLQNNVEELWTLLNFLDQERFNSMETFLESFGNLRDVAQVEQLHSELKPFLLRRMKEDVEKSLAPKEETIVEVELTVLQKQYYRAIFEQNTEFLARGRKKAQTPSLMNVAMELRKCCNHPFLIKGAEEQEIIRIQQQKGKSQEELDRQAQEILVNSSGKLVLLDKLLPRLKENGHRVLIFSQFKI 662          
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: A0A4D9DBY4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBY4_9STRA)

HSP 1 Score: 280 bits (716), Expect = 6.880e-83
Identity = 148/244 (60.66%), Postives = 180/244 (73.77%), Query Frame = 1
Query:   19 KCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-----DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735
            K  V++TTPE+C+  D S L+   + W +LVVDEAHRLK+  S+L++ L+ERF + + LLLTGTPLQN+  EL+ LL+ VD   F   + F   YG+LQ    +  LQE I+PYLLRRMKEDVEK +PPKEETII+VELT +QKQYYRAIYE+N  FLL G++A DGPSLMNL MELRKCCNHP+L  GVE  +R      G     D D LV+YSGKLVLLDKLLPRL+  GHRVLLFSQFK+
Sbjct:  744 KFQVLITTPEMCLAADASFLMD--LEWTLLVVDEAHRLKNTHSRLSLTLRERFHYPSALLLTGTPLQNDLPELFCLLSFVDPRAFSDLDRFEAAYGNLQDESSLTSLQEAIRPYLLRRMKEDVEKGLPPKEETIIDVELTGVQKQYYRAIYEKNVEFLLGGRKAVDGPSLMNLCMELRKCCNHPFLNKGVELDIRSHAEATGKVYASDADLLVQYSGKLVLLDKLLPRLQANGHRVLLFSQFKI 985          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHJ8_ECTSI3.350e-13286.23CHROMODOMAIN HELICASE DNA BINDING n=1 Tax=Ectocarp... [more]
D8LDG9_ECTSI4.530e-11776.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JB56_9PHAE2.160e-10673.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR34_9PHAE7.980e-9256.82Helicase ATP-binding domain-containing protein n=1... [more]
W7TY28_9STRA1.820e-9160.40Myb domain-containing protein n=1 Tax=Nannochlorop... [more]
B5YP65_THAPS3.240e-8661.57Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
A0A7S4JUU9_9STRA3.820e-8660.57Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
K0SJP8_THAOC2.240e-8459.84Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
K3W860_GLOUD3.530e-8357.31Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A4D9DBY4_9STRA6.880e-8360.66Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12666contigH-paniculata_contig12666:1199..6093 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.0
Seed ortholog evalue1.2e-116
Seed eggNOG ortholog2880.D8LHJ8
KEGG koko:K14436,ko:K14437
Hectar predicted targeting categoryother localisation
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0384@2759
Ec32 ortholog descriptionChromodomain helicase DNA-binding protein
Ec32 orthologEc-10_002170.1
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons7
Model size747
Cds size747
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928988.5441396-CDS-H-paniculata_contig12666:1198..13151622928988.5441396-CDS-H-paniculata_contig12666:1198..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 1199..1315 -
1691480692.4590013-CDS-H-paniculata_contig12666:1198..13151691480692.4590013-CDS-H-paniculata_contig12666:1198..1315Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 1199..1315 -
1622928988.5547245-CDS-H-paniculata_contig12666:1635..16841622928988.5547245-CDS-H-paniculata_contig12666:1635..1684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 1636..1684 -
1691480692.471034-CDS-H-paniculata_contig12666:1635..16841691480692.471034-CDS-H-paniculata_contig12666:1635..1684Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 1636..1684 -
1622928988.5681725-CDS-H-paniculata_contig12666:2373..25281622928988.5681725-CDS-H-paniculata_contig12666:2373..2528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 2374..2528 -
1691480692.4801586-CDS-H-paniculata_contig12666:2373..25281691480692.4801586-CDS-H-paniculata_contig12666:2373..2528Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 2374..2528 -
1622928988.5778325-CDS-H-paniculata_contig12666:4244..43551622928988.5778325-CDS-H-paniculata_contig12666:4244..4355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 4245..4355 -
1691480692.4899843-CDS-H-paniculata_contig12666:4244..43551691480692.4899843-CDS-H-paniculata_contig12666:4244..4355Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 4245..4355 -
1622928988.586829-CDS-H-paniculata_contig12666:4517..46011622928988.586829-CDS-H-paniculata_contig12666:4517..4601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 4518..4601 -
1691480692.4992673-CDS-H-paniculata_contig12666:4517..46011691480692.4992673-CDS-H-paniculata_contig12666:4517..4601Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 4518..4601 -
1622928988.5960565-CDS-H-paniculata_contig12666:5411..54861622928988.5960565-CDS-H-paniculata_contig12666:5411..5486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 5412..5486 -
1691480692.508967-CDS-H-paniculata_contig12666:5411..54861691480692.508967-CDS-H-paniculata_contig12666:5411..5486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 5412..5486 -
1622928988.6070814-CDS-H-paniculata_contig12666:5937..60931622928988.6070814-CDS-H-paniculata_contig12666:5937..6093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 5938..6093 -
1691480692.5190203-CDS-H-paniculata_contig12666:5937..60931691480692.5190203-CDS-H-paniculata_contig12666:5937..6093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12666 5938..6093 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12666.1669.1prot_H-paniculata_contig12666.1669.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12666 1199..6093 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12666.1669.1

>prot_H-paniculata_contig12666.1669.1 ID=prot_H-paniculata_contig12666.1669.1|Name=mRNA_H-paniculata_contig12666.1669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSK
LNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNE
YGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQK
QYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAV
RMQMGGGGDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKVQHL*
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mRNA from alignment at H-paniculata_contig12666:1199..6093-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12666.1669.1 ID=mRNA_H-paniculata_contig12666.1669.1|Name=mRNA_H-paniculata_contig12666.1669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4895bp|location=Sequence derived from alignment at H-paniculata_contig12666:1199..6093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGCGTCGACCGTGGAAGTGCACTGTGGTGGTTACGACGCCGGAGCT GTGCGTGAAGAAGGACGTCAGCTTGCTCCTCGGGCGCAAGATTCACTGGG ACGTGCTTGTTGTCGATGAGGCTCACAGGCTCAAGAGTGACCGTTCCAAG CTCAACGTGAGCTACTTTTGTTCATCTTGTTAATTTCGTATAGCGTCTTA AGGGGGGAGAACTATTGGCCTCATGTTATACGCTATCTTGAAGGTGTAGG GGAAGTTATTGGTCACCTGTTTTGAAAAATAGAATTGTGTCGAATGTTCT AATCGATACAAATCAGATGATTTAGCTGCAAAAATATTGGTGCAAAGATA ACGTGTTTTTTCCATAAAAAAAGGAGTTATTTGTGTAATGAAACCGTTTT ACAGCCCGGATTTTTTCTTCTTCGTGAGAATATGACGGAGTGTTATTTTA CGTGTGTGAAATAAATGTCGGATTTGAACTAGTTTTATCGACTACATAAA ATGTTTATTTTGGTTTTTGGATGATCATGGTTTCAACTGATAGTCAAAAA TACTTGTGTGTTTTCCTGACTGACTGACCTCACGGTGCCACGATTTCCTT ACCCCAGGTGGCCTTGAAAGAGAGATTTTCGTTCGACGCTACCCTGCTGC TGACGGGGACGCCTCTGCAGAACAACACTGAGGTACAAATATGTTTTGCT CGATATAATGAAATGAAACGAAATGAACACTAGTGAGTTGGCTCATGCGA AGTACATACGAAAAGGTACCCTCATGGAGCATGCATCTCAATGTTCGTTG AAACAGAGTGAAAAATGAGCTGTTCGGCGAAGGTGATGGTATGAAAGGCA TACACGAAGTACCGTTTTTTTCTCTTCCTCACTTTGTGCTCGTAGAAACT CTGGCTGTTCATATTCTATGTATTTAACGAAAGAACCGTATTAATGGTTA AATCATTCAGCCCGTCTGATAGAGGAATCATAATGGCACGACGACGTGAC ACGTCCTTTTTTTTTTTCTTATCTTTTCTTCACGACTTGTAAAGCTGTGA TGATAACTGCTGTTCGTATAGCGGAGTTTCTCACACACGTAGGTTATTGT TTCCTGTTACTGACTATGCTGTACAATACTCTCGGAAGCGGTACGGCTGG GGTGGTAGAAGTAGTCCTTTGCAATGGTCTGGTCTCTTGTATTAGCTGTG TATTGCTGTATGCCAGGAAAGGCCCTGGGTCGATACAAGTCTGTCAGTTG GCGGGGTGGTCACACGGTCCGTGCTTCCTGCTCTCAGCTCAAACTGAGGC TACCTTACACAAACCCGGGGATTGGGGATGGAACCGTCACATTAGACAAT GACTGTCACGTCCCGCAATCAACATCTCATAACTCGATTATTAAAAGAAC TCTCTATCTTGTTGAGCACTTCACAATTTGAATTCACCGGCCGCTCATTT TCACACGTGTATTTTCTCTTTTCTATTTCATTCCATTGGCAGGAGCTGTG GACGCTGCTGAACCTCGTGGACGCACCCAAGTTCAGGTCGAAGGAAGGCT TCGTTAACGAATACGGTGACCTACAGGTATTGTATAATACGGAGGGCTTC GGCACCATAAGACCAAAAAAGCAAGAAACACTCTTGAAGGACGTTGGCAA CGTTTTTTTCTCACCATCTCATGTATTGAAGAAAAGCAGCACCCATCAGT ACTCCGGTCTATCTATGTGTGCGCGTATTTTTTGTCAGCGTGCGGAAGAC GTGAATAAGCTCCAGGAGCGCATCAAGCCGTACCTTTTGCGGCGTATGAA GGAGGATGTGGAGAAGGCTGTCCCTCCCAAAGAGGAGACGATCATCGAGG TGTGTGTGCGGGGGCGTGTGTGTGCCGTTCATCCCACGCCATGTATAGCA AGGCGAGGGCTCCCAGAGGACCTCCCCTCCGGGACAGTCTCAGTCGATAG TTTGTCGTCTGGTGTGAAGCAGAATTAAGCTCGAGAATTCCCACGTTTCG GCCGAACTTGGATGGCAGCAGGGGATTTGGGGCACCGGTAGCGTACCGAG GTTTTATTTTTTCTGACATGTAATTTTTCGTTTTAAACTGGGTTACTCGT TTGTGCAATCAGTCGCATTCATCGATGGCGAGATGTACGCCAGATCCGGT CGCTGCAAGGCTGGAGGTGAAAAATGTCTCTGTTCGTTCATCAAATTATC GTCAGAGCTAATCGCGATGTTTGCCGTGCTCCAAAGAAACACGATAATCT TTTTGTTAAACTGTTCGCATGAGACTTCGTTTTTGTAACGCCGCTCGCAA TCTTTCACTCTAGGACAGTAGAAAAGTATTTGCCTGAGTTTCAAAATGAG CTCGTGTATTTTATGTGCCCCAGACTATTCACGACTGCTAATAATACTCG TAAATCGAATGGACGGGGGTGGGTACCTAGTTCCATGTGTCCGCTCATTC TGAAACTAAGGCGAATGCTTTGAATTTTTTGGTGACGAACACGCCCAGTA TCCGTATTTTTTCCGGGGGGTGAAGTGTGTTCTGGTGTCGTACTCTATAT CTAGAAGGAGATAAAGAGGTATGAGCTTCATCAGACAGGGTAATCATTAT TACATAATAAAAGTAGAGGGTCACAATTTGAGCTGAAATCACAACGGTGT TTTTTTTTTTTTTAATTGAAAAAAAAAAAAATCATGAGCCTGAGTGTTGC CTACTTCTTTGTTAATGGTCCATCCGCAGCTTGTACATTCTAAAATCTTG ATCTCGGTGGGTCGGCTTTAAAAAAAAAATGTTTAGCGTCTGGTGGTCTG TTTACATAGGGAAGAGCTTTGTACATTTTTTGTTTTTTAACCCCCGGAAG GCTAAGGCAAAAAACCTCTATCCGATGCTTCCATACCGAAGTACGTCTAC ATTTCCTTTTACAGAACATAATGATTTGTTCCTCTGCGGGGTAGGCGCCA CCTCGGTTCGGCTGAACCAGGTAGGCAATGTGGGGGTTGCACCCACTGAA AGACCTCTGACTAGACACAGTCATGCTCAGTTCACGAGCTACCCTACTCG TTCGGGCGGAGTTCCTTGAGAGCTTTGTACATGTATTGAAGAAACTTGTC TATCCTAGGTGTGAGAATGGAGGTAACTATCATCAGGTTGCCGCCACATT ACCCTCCCCTTCCATTGAGTTTTGTTTTGGAAGAAATCAGTTTGGGGGTA ACCAGAGTCCGACCGGCTGGCGGCGAGGTGCGACAATCTCTTTTCTTGAG ATAAATTCTGAACTTGTTGCTATTTTTCCTCCACCGTGGTTACGAGTTTT GTATCAGGCGCTTAATGTTTCGGTGTAGTAGTCGATACTGGTGTTTGAAC CCATGATGTTGAGGGCGATAAGTAGACGAATTATTTATCGGTGTCGCCAA TGTGAAAATCAGAGAGTAACACTATACTCGACAGACATTGAATGATTATC ACCCCCTTTGAACATGTTTTCCTCAGGTGGTCACCACACAAGTTATTCCC TCTGGTTTTCTCCACCGCTGATCGTTTCTCACGTATGTGACTGTGGGCCT TGCTGGAATGAAAAGGTGGAGTTAACGGAGATTCAGAAGCAGTACTACCG AGCGATCTACGAGCAGAACACCTCCTTCCTCTTGCAGGGCAAAAGGGCGC AAGACGGCCCTAGCCTCATGAATCTGGCCATGGAGCTGCGGAAGTGCTGC AATCACCCTTATCTCATCACGTGAGAGAGAGGTCGACCGAGAGAAGAGAA GAACGACAAAAAAATGCCCCTTTTCGTGTATTGTCATGTGCTAGTGCTGC TGGTGGTTGATGGTGTACCGTATTTCGCCCCGGCCTGAGCACAGAAGAGA GGAGCGAGAGAGAGAGAGAGATTTTGTGTGTATTTTGTTTGCCAATACAG TCGTGCTGTTGATCTATTCTGTCCTGCATGCTGACCGTGTGACTGGCGGT CACGGCGAAAGAACTACATGGGCAAAACAGTTCGTTATCGACAAGCTAGG TCGTGCTGTTCAATGTTTTGGCGGTCATTATGAGTTGGCAATTAACCAAT GAGTGACGCGCCGATCGGTGTCCGACAAGTACCTGACCAGCATATGAGAA GACCTGCCAGACTAGCTTTTGGGTGTGCCGTTGGTGCGTGTACCACTCGC CCTACGTATCACGATTAACGCAATCACTCTTTCGAACAATATAATCTCTC CCGATCTTCCGAAGTGTGGATGTTGACTCTGGACTGAATCAGTCGGTTTC AGTGATGTTTTTCGATGCGAATATGTCCAACAACACTTGGGGTGTTTTCG ACTGTTTTTTTTTTTTTTCCCTCAAATTATCGGGGTCTTTTCCCCTCCTG TTGCTGTATTTTTTTGTGGGTGTGCTGTGTTTTGATTTTTTTTTTGCTTG TGCTACCAGTGGAGTCGAGGACGCCGTGCGAATGCAGATGGGAGGCGGTG GAGACAAGGTGTGCTTGTATGTTTGCAGGATGTTGAATTGCTGTGGTACA AGTTTTTAGCGATCCGTTCATCAGAATCTGAAGATCCGACTCACTCAAAC TGCATTTTTGGTTCTTGTTTTGGCGAATGTGAGGAGGCGCTCTTTCTTAT GACTCTAATTTGAGCTAAGTTTCGGAATTTGCACAATCTCGAGCTTGGTT GCTGCAATACGCATTGTGGTGAAGTACGATCAGCACTCAACGTTTTATTG TTATTTTGGGCGTTTTTTTTGGGTTTTTTTTCCCGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTTTGTGTGTTTAGGACCACCTCGTCAAGTACTCCG GGAAGCTCGTGCTGTTGGACAAGCTGCTGCCGAGACTGAAGGAGCAGGGG CACCGCGTTCTTCTCTTCAGCCAATTCAAGGTGCAGCACTTGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12666:1199..6093-

>mRNA_H-paniculata_contig12666.1669.1 ID=mRNA_H-paniculata_contig12666.1669.1|Name=mRNA_H-paniculata_contig12666.1669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig12666:1199..6093- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGGGCGTCGACCGTGGAAGTGCACTGTGGTGGTTACGACGCCGGAGCT
GTGCGTGAAGAAGGACGTCAGCTTGCTCCTCGGGCGCAAGATTCACTGGG
ACGTGCTTGTTGTCGATGAGGCTCACAGGCTCAAGAGTGACCGTTCCAAG
CTCAACCAGGGGCGTCGACCGTGGAAGTGCACTGTGGTGGTTACGACGCC
GGAGCTGTGCGTGAAGAAGGACGTCAGCTTGCTCCTCGGGCGCAAGATTC
ACTGGGACGTGCTTGTTGTCGATGAGGCTCACAGGCTCAAGAGTGACCGT
TCCAAGCTCAACGTGGCCTTGAAAGAGAGATTTTCGTTCGACGCTACCCT
GCTGCTGACGGGGACGCCTCTGCAGAACAACACTGAGGTGGCCTTGAAAG
AGAGATTTTCGTTCGACGCTACCCTGCTGCTGACGGGGACGCCTCTGCAG
AACAACACTGAGGAGCTGTGGACGCTGCTGAACCTCGTGGACGCACCCAA
GTTCAGGTCGAAGGAAGGCTTCGTTAACGAATACGGTGACCTACAGGAGC
TGTGGACGCTGCTGAACCTCGTGGACGCACCCAAGTTCAGGTCGAAGGAA
GGCTTCGTTAACGAATACGGTGACCTACAGCGTGCGGAAGACGTGAATAA
GCTCCAGGAGCGCATCAAGCCGTACCTTTTGCGGCGTATGAAGGAGGATG
TGGAGAAGGCTGTCCCTCCCAAAGAGGAGACGATCATCGAGCGTGCGGAA
GACGTGAATAAGCTCCAGGAGCGCATCAAGCCGTACCTTTTGCGGCGTAT
GAAGGAGGATGTGGAGAAGGCTGTCCCTCCCAAAGAGGAGACGATCATCG
AGGTGGAGTTAACGGAGATTCAGAAGCAGTACTACCGAGCGATCTACGAG
CAGAACACCTCCTTCCTCTTGCAGGGCAAAAGGGCGCAAGACGGCCCTAG
CCTCATGAATCTGGCCATGGAGCTGCGGAAGTGCTGCAATCACCCTTATC
TCATCACGTGGAGTTAACGGAGATTCAGAAGCAGTACTACCGAGCGATCT
ACGAGCAGAACACCTCCTTCCTCTTGCAGGGCAAAAGGGCGCAAGACGGC
CCTAGCCTCATGAATCTGGCCATGGAGCTGCGGAAGTGCTGCAATCACCC
TTATCTCATCACTGGAGTCGAGGACGCCGTGCGAATGCAGATGGGAGGCG
GTGGAGACAAGTGGAGTCGAGGACGCCGTGCGAATGCAGATGGGAGGCGG
TGGAGACAAGGACCACCTCGTCAAGTACTCCGGGAAGCTCGTGCTGTTGG
ACAAGCTGCTGCCGAGACTGAAGGAGCAGGGGCACCGCGTTCTTCTCTTC
AGCCAATTCAAGGTGCAGCACTTGTAAGACCACCTCGTCAAGTACTCCGG
GAAGCTCGTGCTGTTGGACAAGCTGCTGCCGAGACTGAAGGAGCAGGGGC
ACCGCGTTCTTCTCTTCAGCCAATTCAAGGTGCAGCACTTGTAA
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