mRNA_H-paniculata_contig12666.1669.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: D8LHJ8_ECTSI (CHROMODOMAIN HELICASE DNA BINDING n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ8_ECTSI) HSP 1 Score: 421 bits (1083), Expect = 3.350e-132 Identity = 213/247 (86.23%), Postives = 232/247 (93.93%), Query Frame = 1 Query: 1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGK-RAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 +GRR WK TVVVTTPELC++K+VS LLGRK+ WD LVVDEAHRLKS RSKLNV LKE F+FD+TLLLTGTPLQNNTEELWTLLNLVDAPKFR+K+ FV +YGDLQRAEDV++LQE IKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNT+FLLQGK RAQDGPSLMNLAM+LRKCCNHPYLITGVEDAVR+QMG G DK+HLVK+SGKLVLLDKLLPRLK+QGHRVLLFSQFK+ Sbjct: 931 KGRRLWKSTVVVTTPELCIRKEVSSLLGRKVRWDALVVDEAHRLKSSRSKLNVVLKESFTFDSTLLLTGTPLQNNTEELWTLLNLVDAPKFRNKDQFVEDYGDLQRAEDVSRLQENIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTTFLLQGKKRAQDGPSLMNLAMQLRKCCNHPYLITGVEDAVRVQMGDSGEDKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKI 1177
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: D8LDG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG9_ECTSI) HSP 1 Score: 375 bits (963), Expect = 4.530e-117 Identity = 190/247 (76.92%), Postives = 220/247 (89.07%), Query Frame = 1 Query: 1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKR-AQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 +G+R WK TVV+TTPELC++KDV LL R+I WDVLVVDEAHRLK+ S+LNV LK+ ++F+++LLLTGTPLQNNTEELWTLLNLVD PKFR ++GFV +YGDLQ AEDV++LQE IKPYLLRRMKE VEKAVPPKEE IIEVELTEIQKQYYRAIY++NT+FLLQGK+ A+D PSLMNLAM+LRKCCNHP+LITGVED V Q+GG K+HLVK+SGKLVLLDKLLPRLK QGHRVLLFSQFK+ Sbjct: 521 KGKRVWKSTVVITTPELCIRKDVKTLLQRRIAWDVLVVDEAHRLKNSASRLNVVLKD-YTFESSLLLTGTPLQNNTEELWTLLNLVDEPKFRDQQGFVEKYGDLQEAEDVSELQEAIKPYLLRRMKEGVEKAVPPKEEIIIEVELTEIQKQYYRAIYDRNTTFLLQGKKQAKDAPSLMNLAMQLRKCCNHPFLITGVEDDVSQQLGGNKTSKEHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFKI 766
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: A0A6H5JB56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB56_9PHAE) HSP 1 Score: 347 bits (891), Expect = 2.160e-106 Identity = 182/247 (73.68%), Postives = 198/247 (80.16%), Query Frame = 1 Query: 1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGK-RAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 +GRR WK TVVVTTPELC++K+VS LLGRKIHWD LVVDEAHRLKS RSKLNVALKE F+FD+TLLLTGTPLQNNTEELWTLLNLVDAPKFR+K+ FV +YGDLQ VELTEIQKQYYRAIYEQNT+FLLQGK RAQDGPSLMNLAM+LRKCCNHPYLITGVEDAVR+QMG G DK+HLVK+SGKLVLLDKLLPRLK+QGHRVLLFSQFK+ Sbjct: 619 KGRRLWKSTVVVTTPELCIRKEVSSLLGRKIHWDALVVDEAHRLKSSRSKLNVALKESFTFDSTLLLTGTPLQNNTEELWTLLNLVDAPKFRNKDQFVEDYGDLQ-------------------------------------VELTEIQKQYYRAIYEQNTTFLLQGKKRAQDGPSLMNLAMQLRKCCNHPYLITGVEDAVRVQMGDSGEDKEHLVKHSGKLVLLDKLLPRLKQQGHRVLLFSQFKI 828
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: A0A6H5KR34_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR34_9PHAE) HSP 1 Score: 303 bits (775), Expect = 7.980e-92 Identity = 175/308 (56.82%), Postives = 206/308 (66.88%), Query Frame = 1 Query: 1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDL---------------------------------------------------------------QRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKR-AQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGGDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFK 732 +G+R WK TVV+T+P+LC++KDV LL KI WDVLVVD+AHRLK+ S+LNV LK+ ++ +++LLLTGTPLQNNT+ELWTLLNLVD PKFR + G V +YGDL AEDV++LQE IK YLLRRMKEDVEKAV PKEE IIEVELTEIQKQYYRAIY++NT+FLLQGK+ A+D PSLMNLAM+LRKC NHPYLIT + R+Q +HLVK+SGKLVLLDKLLPRLK QGHRVLLFSQFK Sbjct: 467 KGKRVWKSTVVITSPKLCIRKDVKALLQCKITWDVLVVDKAHRLKNSASRLNVVLKD-YTIESSLLLTGTPLQNNTKELWTLLNLVDQPKFRDQRGVVEKYGDLPVRQRHRVLDVQCSVRFMDKVQIFDISALLLFLQRLARGPSPEIPALNKKLYTQVIQPGANELSEAEDVSELQEEIKSYLLRRMKEDVEKAVLPKEEIIIEVELTEIQKQYYRAIYDRNTTFLLQGKKQAKDAPSLMNLAMQLRKCYNHPYLITRIFS--RLQ-------EHLVKHSGKLVLLDKLLPRLKTQGHRVLLFSQFK 764
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: W7TY28_9STRA (Myb domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TY28_9STRA) HSP 1 Score: 284 bits (727), Expect = 1.820e-91 Identity = 151/250 (60.40%), Postives = 183/250 (73.20%), Query Frame = 1 Query: 1 QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-----DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 + R P K V++TTPE+C+ D S L+ + W +LVVDEAHRLK+ S+L++ L+ERF + + LLLTGTPLQN+ EL+ LL+ VD F E F YG+LQ + LQE I+PYLLRRMKEDVEK +PPKEETII+VELT +QKQYYRAIYE+N FLL G++A DGPSLMNL MELRKCCNHP+L GVE +R G D D LV+YSGKLVLLDKLLPRL+ GHRVLLFSQFK+ Sbjct: 67 EWRFPQKFQVLITTPEMCLAADASFLMD--LEWTLLVVDEAHRLKNTHSRLSLTLRERFHYPSALLLTGTPLQNDLPELFCLLSFVDPRAFSDLERFEAAYGNLQDESSLTSLQEAIRPYLLRRMKEDVEKGLPPKEETIIDVELTGVQKQYYRAIYEKNVEFLLGGRKAVDGPSLMNLCMELRKCCNHPFLNKGVELDIRSHAEATGKVYTSDADLLVQYSGKLVLLDKLLPRLQANGHRVLLFSQFKI 314
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: B5YP65_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YP65_THAPS) HSP 1 Score: 268 bits (686), Expect = 3.240e-86 Identity = 133/216 (61.57%), Postives = 171/216 (79.17%), Query Frame = 1 Query: 91 IHWDVLVVDEAHRLKSDRSKLNVALKE-RFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGGDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 I W+++VVDEAHRLK+ SKL L++ RF F+ LLLTGTP+QNN +ELWTLLN ++ F + F+ +YGD++ E V++L E I+P++LRR+KEDVEK+VPPKEET+IEVELT +QKQYYRA+YE+N FL +GK+ DGPS+ NLAM+LRKCCNHP+L+TGVE VR+Q D +V+ SGKLVLLDKLLPRLK GHR+LLFSQFK+ Sbjct: 13 IDWEIMVVDEAHRLKNHNSKLATNLRDDRFRFNQCLLLTGTPIQNNMQELWTLLNFINPDGFEDVDEFMEQYGDIRSKEKVDELHETIRPFILRRLKEDVEKSVPPKEETLIEVELTVLQKQYYRALYEKNLKFLHRGKKPLDGPSINNLAMQLRKCCNHPFLLTGVESEVRLQQPNKEIVDLMVEASGKLVLLDKLLPRLKADGHRILLFSQFKI 228
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: A0A7S4JUU9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JUU9_9STRA) HSP 1 Score: 285 bits (728), Expect = 3.820e-86 Identity = 149/246 (60.57%), Postives = 192/246 (78.05%), Query Frame = 1 Query: 10 RPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKE-RFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKR-AQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGG--GDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 + W TVVVTTPE+ V D S L K W++LVVDEAHRLK+ SKL V L++ RFSF +TLLLTGTP+QNN E+WTLLN+VD +F S + F+ +GD++ + +++L E+I+PY+LRR+KEDVEK+VPPKEET+IEVELT +QKQYYRA+YE+N FL + K+ A DGPS+ NLAM+LRKCCNHP+L+ GVE+ V+ Q G + D LVK SGKLVLLDKLLP+L + GHRVL+FSQFK+ Sbjct: 286 KTWMVTVVVTTPEMLVTDDYSELTSVK--WELLVVDEAHRLKNHSSKLAVNLRDDRFSFKSTLLLTGTPIQNNMAEMWTLLNVVDPKRFDSVDEFLERFGDIKSKDRLDELHEQIRPYILRRLKEDVEKSVPPKEETLIEVELTVLQKQYYRALYEKNVQFLHRNKKKALDGPSINNLAMQLRKCCNHPFLLKGVEEEVKAQDKAGTTSEADFLVKSSGKLVLLDKLLPKLSDGGHRVLIFSQFKI 529
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: K0SJP8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJP8_THAOC) HSP 1 Score: 284 bits (727), Expect = 2.240e-84 Identity = 146/244 (59.84%), Postives = 185/244 (75.82%), Query Frame = 1 Query: 7 RRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALK-ERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGGDKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 ++ W VV+TTPE+ + D L + I W+++VVDEAHRLK+ +SKL L+ ERF F+ LLLTGTP+QNN +ELWTLLN V+ F S F+++YGD++ E V++L E I+P++LRR+KEDVEK+VPPKEET+IEVELT +QKQYYRA+YE+N FL + K+A DGPSL NLAM+LRKCCNHP+L+TGVE VR Q LV SGKLVLLDKLLPRLK GHRVL+FSQFK+ Sbjct: 506 QKQWMVEVVITTPEIMIASDWPEL--KAIEWEIIVVDEAHRLKNHQSKLAQNLRDERFVFNHALLLTGTPIQNNMQELWTLLNFVEPDTFDSLSDFLDDYGDIKSKEKVDELHESIRPFILRRLKEDVEKSVPPKEETLIEVELTVLQKQYYRALYEKNLKFLHKNKKAIDGPSLNNLAMQLRKCCNHPFLLTGVEQEVRQQNPSADVTQSLVNASGKLVLLDKLLPRLKADGHRVLIFSQFKI 747
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: K3W860_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W860_GLOUD) HSP 1 Score: 278 bits (710), Expect = 3.530e-83 Identity = 145/253 (57.31%), Postives = 184/253 (72.73%), Query Frame = 1 Query: 7 RRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDA--VRMQMGGGGDKDHL--------VKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 R ++ V++TTPE+C D S L +++W VLVVDEAHRLK+ SKL+ + + F +D LLLTGTPLQNN EELWTLLN +D +F S E F+ +G+L+ V +L +KP+LLRRMKEDVEK++ PKEETI+EVELT +QKQYYRAI+EQNT FL +G++ PSLMN+AMELRKCCNHP+LI G E+ +R+Q G ++ L V SGKLVLLDKLLPRLKE GHRVL+FSQFK+ Sbjct: 412 RDQYRFDVLITTPEMCGTADFSKLT--RVNWQVLVVDEAHRLKNKSSKLSSLIHKNFKYDRILLLTGTPLQNNVEELWTLLNFLDQERFNSMETFLESFGNLRDVAQVEQLHSELKPFLLRRMKEDVEKSLAPKEETIVEVELTVLQKQYYRAIFEQNTEFLARGRKKAQTPSLMNVAMELRKCCNHPFLIKGAEEQEIIRIQQQKGKSQEELDRQAQEILVNSSGKLVLLDKLLPRLKENGHRVLIFSQFKI 662
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Match: A0A4D9DBY4_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DBY4_9STRA) HSP 1 Score: 280 bits (716), Expect = 6.880e-83 Identity = 148/244 (60.66%), Postives = 180/244 (73.77%), Query Frame = 1 Query: 19 KCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKLNVALKERFSFDATLLLTGTPLQNNTEELWTLLNLVDAPKFRSKEGFVNEYGDLQRAEDVNKLQERIKPYLLRRMKEDVEKAVPPKEETIIEVELTEIQKQYYRAIYEQNTSFLLQGKRAQDGPSLMNLAMELRKCCNHPYLITGVEDAVRMQMGGGG-----DKDHLVKYSGKLVLLDKLLPRLKEQGHRVLLFSQFKV 735 K V++TTPE+C+ D S L+ + W +LVVDEAHRLK+ S+L++ L+ERF + + LLLTGTPLQN+ EL+ LL+ VD F + F YG+LQ + LQE I+PYLLRRMKEDVEK +PPKEETII+VELT +QKQYYRAIYE+N FLL G++A DGPSLMNL MELRKCCNHP+L GVE +R G D D LV+YSGKLVLLDKLLPRL+ GHRVLLFSQFK+ Sbjct: 744 KFQVLITTPEMCLAADASFLMD--LEWTLLVVDEAHRLKNTHSRLSLTLRERFHYPSALLLTGTPLQNDLPELFCLLSFVDPRAFSDLDRFEAAYGNLQDESSLTSLQEAIRPYLLRRMKEDVEKGLPPKEETIIDVELTGVQKQYYRAIYEKNVEFLLGGRKAVDGPSLMNLCMELRKCCNHPFLNKGVELDIRSHAEATGKVYASDADLLVQYSGKLVLLDKLLPRLQANGHRVLLFSQFKI 985 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12666.1669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12666.1669.1 >prot_H-paniculata_contig12666.1669.1 ID=prot_H-paniculata_contig12666.1669.1|Name=mRNA_H-paniculata_contig12666.1669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp QGRRPWKCTVVVTTPELCVKKDVSLLLGRKIHWDVLVVDEAHRLKSDRSKback to top mRNA from alignment at H-paniculata_contig12666:1199..6093- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12666.1669.1 ID=mRNA_H-paniculata_contig12666.1669.1|Name=mRNA_H-paniculata_contig12666.1669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4895bp|location=Sequence derived from alignment at H-paniculata_contig12666:1199..6093- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12666:1199..6093- >mRNA_H-paniculata_contig12666.1669.1 ID=mRNA_H-paniculata_contig12666.1669.1|Name=mRNA_H-paniculata_contig12666.1669.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig12666:1199..6093- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |