mRNA_H-paniculata_contig12551.1606.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12551.1606.1
Unique NamemRNA_H-paniculata_contig12551.1606.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: A0A1X7UZ54_AMPQE (Uncharacterized protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7UZ54_AMPQE)

HSP 1 Score: 149 bits (375), Expect = 2.570e-41
Identity = 78/200 (39.00%), Postives = 117/200 (58.50%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVA----AERRRYI-------------LGIFEDNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLRNL 549
            TRPDIT+AV  AAR   +P  +  +  KR+FRYL    + G+ F  K N   + GF DADW  DV D  S +GY+F++ G A++W  +KQ  V  S+ EAEYVA    A+   ++             + I+EDN+SAI+++K    H R +HI + +  IRD V++ ++ L Y +T +  AD+LTK L R+KF++ R +
Sbjct:   46 TRPDITFAVGLAARFSSNPTSQHLTAVKRIFRYLRKTTNYGLLFR-KRNSKSITGFSDADWGGDVTDCKSTSGYIFQIGGTAVTWQSKKQSCVALSTAEAEYVALSSAAQEATWLKQLNQDLQGSTDPIVIYEDNQSAISIAKNPQFHGRVKHINIKYHFIRDQVRDNIIKLVYCETSEMIADMLTKALGRIKFEKFREM 244          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: UPI0009AB427F (uncharacterized protein LOC109950541 n=1 Tax=Prunus persica TaxID=3760 RepID=UPI0009AB427F)

HSP 1 Score: 148 bits (373), Expect = 2.980e-40
Identity = 84/202 (41.58%), Postives = 118/202 (58.42%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVAAE----RRRYILGIFE--------------DNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLRNLL 552
            TRPDI YAV   +R ME P     +  KR+ RY+    D G+ F  + +G G  G+ D+D+A D+ DR S +G++F LN GAISW  +KQQ VT SSTEAEYVAA     +  ++  IFE              DN S I LS+    H R++HI V +  +RD   +  + L+Y ++G+Q ADILTK L +  F++LR++L
Sbjct:  113 TRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHIFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLRKIFEVLGNVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDEKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 313          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: A0A060SU91_PYCCI (Uncharacterized protein n=2 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SU91_PYCCI)

HSP 1 Score: 146 bits (369), Expect = 3.880e-40
Identity = 88/214 (41.12%), Postives = 114/214 (53.27%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNG---HGLE--GFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVAA-------------------------ERRRYILGIFEDNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLRNLL 552
            +RPDI +AV   ++    P  E ++   R+FRYL     + +T+         HGL   G+ DADWA D  DR S + YVFKL GGAISWC RKQQ +  SSTEAEYVA                            R  +  I  DN+SA+ L+K +S H RT+HI V    IRD ++ G L ++Y+ TGDQ AD+LTK L+R K     NLL
Sbjct:   68 SRPDIAFAVGTLSKHASTPGTEHWNALMRVFRYLRGTSGLRLTYGKDLKPLCEHGLTVVGYSDADWAGDRNDRRSTSAYVFKLGGGAISWCSRKQQSIAQSSTEAEYVALALAAKEGLWLSTLLSDLDSPVFHALSSRLQVPLILVDNQSAMALAKNSSFHDRTKHIAVRHHFIRDELERGTLTVEYVPTGDQVADVLTKSLAREKHTYFTNLL 281          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: A0A4Y9ZJA2_9AGAM (Integrase catalytic domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZJA2_9AGAM)

HSP 1 Score: 152 bits (385), Expect = 1.820e-39
Identity = 85/197 (43.15%), Postives = 111/197 (56.35%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVAAERR-------RYILG-----------IFEDNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQR 537
            TRPDI YAV   ++    P  E ++   R F+YL    D  + ++GK     L G+VD+DWA D  DR SI+GYVF L G AISW  +KQQ V  SSTEAEY+AA          R +L            +  DN+ AI L+K  + H  T+HI V    +RD V++G +A +Y+ T DQ AD+LTKGLSR K  R
Sbjct: 1201 TRPDIAYAVGLLSQHSSAPGAEHWNVAARTFKYLRRTADYQLVYNGKRKNDELTGYVDSDWANDPNDRRSISGYVFTLAGAAISWSSKKQQSVAQSSTEAEYMAAAHATKEAVWLRMLLSDLRQPIERPTPLLIDNQGAIALAKNPAYHACTKHIDVRHHFLRDKVEDGTIAAEYIPTADQVADVLTKGLSREKHDR 1397          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: UPI001C093D0F (LOW QUALITY PROTEIN: secreted RxLR effector protein 161-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C093D0F)

HSP 1 Score: 142 bits (358), Expect = 6.630e-39
Identity = 80/201 (39.80%), Postives = 117/201 (58.21%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVA-------AERRRYILG-----------IFEDNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLRNL 549
            TRPDI +AV   A    DP ++ ++  KR+ RYLN    +G+ +S K+      G+ DADWA D+ DR S++GY+FK++G A+SW  +KQ  V  S+ EAEY+A       A   R +L            I+EDN+SAI +++    H R +HI +    IRD V  G + L+  +T D  AD+LTKGL++VKF +LR +
Sbjct:   41 TRPDIAFAVSNVASFCSDPTKQHWTAVKRILRYLNGTQPLGLLYS-KNTEKECIGYSDADWAGDLDDRKSVSGYMFKMSGAAVSWKSKKQSXVLLSTAEAEYMALASAAQEAVWMRQLLSDLKNCPAGATVIYEDNQSAICMARNPQFHGRAKHIDIKHHFIRDQVASGAVDLKDCKTDDMIADMLTKGLTQVKFIKLREM 240          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: A0A4Y1RBF6_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBF6_PRUDU)

HSP 1 Score: 150 bits (378), Expect = 1.490e-38
Identity = 85/202 (42.08%), Postives = 118/202 (58.42%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVAAE----RRRYILGIFE--------------DNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLRNLL 552
            TRPDI YAV   +R ME P     +  KR+ RY+    D G+ F  + +G G  G+ D+D+A D+ DR S +G+ F LN GAISW  +KQQ VT SSTEAEYVAA     +  ++  IFE              DN S I LS+    H R++HI V +  +RD   +G + L+Y ++G+Q ADILTK L +  F++LR++L
Sbjct:  706 TRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHTFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLKKIFEVLGDVQKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDGKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 906          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: A0A4Y1R4M3_PRUDU (ADP glucose pyrophosphorylase large subunit 1 n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R4M3_PRUDU)

HSP 1 Score: 150 bits (378), Expect = 1.590e-38
Identity = 85/202 (42.08%), Postives = 118/202 (58.42%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVAAE----RRRYILGIFE--------------DNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLRNLL 552
            TRPDI YAV   +R ME P     +  KR+ RY+    D G+ F  + +G G  G+ D+D+A D+ DR S +G+ F LN GAISW  +KQQ VT SSTEAEYVAA     +  ++  IFE              DN S I LS+    H R++HI V +  +RD   +G + L+Y ++G+Q ADILTK L +  F++LR++L
Sbjct: 1148 TRPDIMYAVSLVSRYMEKPTEMHLNAAKRILRYVKGTIDYGV-FYKREDGSGFVGYTDSDYAGDIDDRKSTSGHTFLLNSGAISWSSKKQQIVTLSSTEAEYVAAAASSCQAMWLKKIFEVLGDVKKGPTTIYCDNISTIKLSRNPVMHGRSKHIDVRFHFLRDLCSDGKIVLEYCKSGEQVADILTKPLKQPAFEKLRSML 1348          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: A0A4Y9ZVS1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Hericium alpestre TaxID=135208 RepID=A0A4Y9ZVS1_9AGAM)

HSP 1 Score: 147 bits (372), Expect = 1.810e-38
Identity = 82/202 (40.59%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVAAERR-------RYILG-----------IFEDNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLRNLL 552
            TRPD++YAV   ++ M++P    +   KR+ RYL    +  +T+ G  N +G+EGF DADW      R SI+GYVF ++GGA+SW  +KQ  V  SSTEAEYVA           R  LG           ++ DN+SAI L+K    H RT+HI + +  IRD V+ G + + Y  T D  AD+LTK L+R K +++R L+
Sbjct:  344 TRPDVSYAVTALSQFMQNPGHPHWEAAKRVMRYLKGTKEEWLTYGG-DNANGMEGFSDADWGSS-DHRRSISGYVFLIDGGAVSWSSKKQPIVALSSTEAEYVAMTHAAKEVLWTRAFLGEIISPFDKPTTLYADNQSAITLAKDNLYHARTKHIAIRFHFIRDIVERGEVDIVYCPTADMAADVLTKPLTRPKMEKMRGLI 543          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: A0A6D2JBX5_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JBX5_9BRAS)

HSP 1 Score: 144 bits (363), Expect = 2.420e-38
Identity = 85/199 (42.71%), Postives = 114/199 (57.29%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVAAERR-------RYILG-----------IFEDNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLR 543
            TRPD+ Y+V+  +R ME+P  +     KR+ RY+      GI +  +  G  L GFVD+D+A DV DR S +GYVF L GGA+SW  +KQ  VT S+TEAE+VAA          R ILG           +F DN S I LSK    H R++HI V +  +RD V E V+ L++  T DQ +DI+TK +    F+RLR
Sbjct:  169 TRPDLIYSVNLVSRYMENPNEQHLLAAKRILRYVQGTCGFGIRYK-QGEGEKLVGFVDSDYAGDVDDRKSTSGYVFMLGGGAVSWASKKQPIVTLSTTEAEFVAAAYGACQAMWLRNILGEIGWAQEEGTTLFCDNSSTIKLSKNPVLHGRSKHIHVRYYFLRDLVNEEVILLKFCGTEDQLSDIMTKAVKLEVFERLR 366          
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Match: A0A151SR20_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SR20_CAJCA)

HSP 1 Score: 142 bits (358), Expect = 2.840e-38
Identity = 88/202 (43.56%), Postives = 114/202 (56.44%), Query Frame = 1
Query:    1 TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNGHGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEAEYVAA---------------ERRRYILG---IFEDNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQEGVLALQYMQTGDQRADILTKGLSRVKFQRLRNLL 552
            TRPDI YAV   +R ME P        KR+FRYL    D+G+ F  K NG  L GF D+++A D+ DR S +G+VF +  GAISW  +KQQ VT S+TEAE++AA               E   Y  G   I  DN S I LS+    H R++HI V +  +RD V E ++ L Y ++ DQ ADILTK L    F++LR LL
Sbjct:   96 TRPDIMYAVCLISRYMERPTELHLKAAKRVFRYLKGTTDLGV-FYKKINGSILTGFTDSNYAGDMDDRRSTSGHVFMIGSGAISWASKKQQVVTLSTTEAEFIAAATSACQAIWLRRILEELHFYQQGPTVIHCDNSSTIKLSRNPILHGRSKHIDVRYHFLRDLVIEKIIDLVYCRSEDQVADILTKPLKLEAFEKLRGLL 296          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12551.1606.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1X7UZ54_AMPQE2.570e-4139.00Uncharacterized protein n=1 Tax=Amphimedon queensl... [more]
UPI0009AB427F2.980e-4041.58uncharacterized protein LOC109950541 n=1 Tax=Prunu... [more]
A0A060SU91_PYCCI3.880e-4041.12Uncharacterized protein n=2 Tax=Pycnoporus cinnaba... [more]
A0A4Y9ZJA2_9AGAM1.820e-3943.15Integrase catalytic domain-containing protein n=1 ... [more]
UPI001C093D0F6.630e-3939.80LOW QUALITY PROTEIN: secreted RxLR effector protei... [more]
A0A4Y1RBF6_PRUDU1.490e-3842.08ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A4Y1R4M3_PRUDU1.590e-3842.08ADP glucose pyrophosphorylase large subunit 1 n=1 ... [more]
A0A4Y9ZVS1_9AGAM1.810e-3840.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6D2JBX5_9BRAS2.420e-3842.71Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A151SR20_CAJCA2.840e-3843.56Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12551contigH-paniculata_contig12551:7008..7610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score147.5
Seed ortholog evalue6.1e-33
Seed eggNOG ortholog400682.PAC_15720214
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A5XY@33154,3C0JZ@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons2
Model size558
Cds size558
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.827453-CDS-H-paniculata_contig12551:7007..72251622928979.827453-CDS-H-paniculata_contig12551:7007..7225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12551 7008..7225 -
1691480688.6599665-CDS-H-paniculata_contig12551:7007..72251691480688.6599665-CDS-H-paniculata_contig12551:7007..7225Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12551 7008..7225 -
1622928979.8391728-CDS-H-paniculata_contig12551:7270..76101622928979.8391728-CDS-H-paniculata_contig12551:7270..7610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12551 7271..7610 -
1691480688.676448-CDS-H-paniculata_contig12551:7270..76101691480688.676448-CDS-H-paniculata_contig12551:7270..7610Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12551 7271..7610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12551.1606.1prot_H-paniculata_contig12551.1606.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12551 7008..7610 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12551.1606.1

>prot_H-paniculata_contig12551.1606.1 ID=prot_H-paniculata_contig12551.1606.1|Name=mRNA_H-paniculata_contig12551.1606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
TRPDITYAVHQAARRMEDPYREDFSTCKRLFRYLNTVPDVGITFSGKSNG
HGLEGFVDADWAEDVKDRNSITGYVFKLNGGAISWCPRKQQFVTWSSTEA
EYVAAERRRYILGIFEDNKSAINLSKGTSAHCRTQHIGVCWRGIRDGVQE
GVLALQYMQTGDQRADILTKGLSRVKFQRLRNLLV*
back to top

mRNA from alignment at H-paniculata_contig12551:7008..7610-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12551.1606.1 ID=mRNA_H-paniculata_contig12551.1606.1|Name=mRNA_H-paniculata_contig12551.1606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=603bp|location=Sequence derived from alignment at H-paniculata_contig12551:7008..7610- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTAGACCTGATATAACATACGCGGTACACCAAGCAGCACGTCGTATGGA GGACCCATATCGGGAAGACTTCAGTACATGCAAGCGCCTTTTTCGTTATC TCAATACTGTGCCTGACGTCGGCATTACGTTCAGCGGTAAGAGTAATGGT CACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCAAGGA CCGAAATTCCATAACAGGATACGTTTTCAAGCTGAACGGTGGCGCGATAA GTTGGTGCCCTAGGAAGCAACAGTTCGTCACGTGGTCCAGTACAGAGGCA GAGTACGTTGCTGCAGAAAGGAGACGGTATATCTTAGGGAGTTACTAGGA TCGATAGGTTTTCGGATGCATGGGGAACACGACAGTATTTGAGGACAATA AATCAGCTATCAATCTCAGTAAGGGAACTAGCGCACACTGCAGGACACAG CACATCGGAGTGTGCTGGCGCGGAATTCGAGACGGGGTTCAGGAAGGAGT ATTGGCGTTGCAATACATGCAGACCGGCGACCAACGTGCTGACATTTTAA CGAAAGGATTAAGCAGAGTAAAGTTTCAGAGACTGAGAAATTTACTCGTG TGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12551:7008..7610-

>mRNA_H-paniculata_contig12551.1606.1 ID=mRNA_H-paniculata_contig12551.1606.1|Name=mRNA_H-paniculata_contig12551.1606.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig12551:7008..7610- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTAGACCTGATATAACATACGCGGTACACCAAGCAGCACGTCGTATGGA
GGACCCATATCGGGAAGACTTCAGTACATGCAAGCGCCTTTTTCGTTATC
TCAATACTGTGCCTGACGTCGGCATTACGTTCAGCGGTAAGAGTAATGGT
CACGGTCTGGAAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCAAGGA
CCGAAATTCCATAACAGGATACGTTTTCAAGCTGAACGGTGGCGCGATAA
GTTGGTGCCCTAGGAAGCAACAGTTCGTCACGTGGTCCAGTACAGAGGCA
GAGTACGTTGCTGCAGAAAGGAGACGGTATATCTTAGGGAACTAGACCTG
ATATAACATACGCGGTACACCAAGCAGCACGTCGTATGGAGGACCCATAT
CGGGAAGACTTCAGTACATGCAAGCGCCTTTTTCGTTATCTCAATACTGT
GCCTGACGTCGGCATTACGTTCAGCGGTAAGAGTAATGGTCACGGTCTGG
AAGGATTCGTTGATGCCGATTGGGCGGAAGATGTCAAGGACCGAAATTCC
ATAACAGGATACGTTTTCAAGCTGAACGGTGGCGCGATAAGTTGGTGCCC
TAGGAAGCAACAGTTCGTCACGTGGTCCAGTACAGAGGCAGAGTACGTTG
CTGCAGAAAGGAGACGGTATATCTTAGGGATATTTGAGGACAATAAATCA
GCTATCAATCTCAGTAAGGGAACTAGCGCACACTGCAGGACACAGCACAT
CGGAGTGTGCTGGCGCGGAATTCGAGACGGGGTTCAGGAAGGAGTATTGG
CGTTGCAATACATGCAGACCGGCGACCAACGTGCTGACATTTTAACGAAA
GGATTAAGCAGAGTAAAGTTTCAGAGACTGAGAAATTTACTCGTGTGATA
TTTGAGGACAATAAATCAGCTATCAATCTCAGTAAGGGAACTAGCGCACA
CTGCAGGACACAGCACATCGGAGTGTGCTGGCGCGGAATTCGAGACGGGG
TTCAGGAAGGAGTATTGGCGTTGCAATACATGCAGACCGGCGACCAACGT
GCTGACATTTTAACGAAAGGATTAAGCAGAGTAAAGTTTCAGAGACTGAG
AAATTTACTCGTGTGA
back to top