mRNA_H-paniculata_contig1255.1601.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1255.1601.1
Unique NamemRNA_H-paniculata_contig1255.1601.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1255.1601.1 vs. uniprot
Match: A0A6H5JHD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHD3_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.450e-9
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = 2 
Query:  104 DPCAGAMAAYLKCVEGKTAGLRDGDECAEEGSEYKACRQRVKAAKR 241
            DPC  AM AY++CVEGK  GLRDGDEC  E   YK CRQ V+ AK+
Sbjct:   14 DPCLEAMGAYVRCVEGKADGLRDGDECTAEVEAYKKCRQLVREAKK 59
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1255.1601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHD3_9PHAE1.450e-963.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1255contigH-paniculata_contig1255:245..1543 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.3e-07
Seed eggNOG ortholog272952.HpaP810179
Hectar predicted targeting categoryother localisation
EggNOG OGs2E6MP@1,2SDAV@2759,3QGRI@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size738
Cds size222
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1255.1601.1prot_H-paniculata_contig1255.1601.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1255 330..1112 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.8166525-UTR-H-paniculata_contig1255:244..3291622928978.8166525-UTR-H-paniculata_contig1255:244..329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1255 245..329 +
1691480688.262752-UTR-H-paniculata_contig1255:244..3291691480688.262752-UTR-H-paniculata_contig1255:244..329Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1255 245..329 +
1622928978.8623476-UTR-H-paniculata_contig1255:1112..15431622928978.8623476-UTR-H-paniculata_contig1255:1112..1543Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1255 1113..1543 +
1691480688.2904325-UTR-H-paniculata_contig1255:1112..15431691480688.2904325-UTR-H-paniculata_contig1255:1112..1543Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1255 1113..1543 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928978.8274581-CDS-H-paniculata_contig1255:329..3821622928978.8274581-CDS-H-paniculata_contig1255:329..382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1255 330..382 +
1691480688.2739067-CDS-H-paniculata_contig1255:329..3821691480688.2739067-CDS-H-paniculata_contig1255:329..382Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1255 330..382 +
1622928978.842188-CDS-H-paniculata_contig1255:943..11121622928978.842188-CDS-H-paniculata_contig1255:943..1112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1255 944..1112 +
1691480688.281707-CDS-H-paniculata_contig1255:943..11121691480688.281707-CDS-H-paniculata_contig1255:943..1112Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1255 944..1112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1255.1601.1

>prot_H-paniculata_contig1255.1601.1 ID=prot_H-paniculata_contig1255.1601.1|Name=mRNA_H-paniculata_contig1255.1601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MRDDRIDPCAGAMAAYLKCVEGKTAGLRDGDECAEEGSEYKACRQRVKAA
KRGNSTSNTTSTAVLAKGEKSLR*
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mRNA from alignment at H-paniculata_contig1255:245..1543+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1255.1601.1 ID=mRNA_H-paniculata_contig1255.1601.1|Name=mRNA_H-paniculata_contig1255.1601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1299bp|location=Sequence derived from alignment at H-paniculata_contig1255:245..1543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAGTTCGAGCACGAAGAGACTAGAAGGTGCGCCCATCAGCGACGGTAGT
TGCGGCCTGTGTCGCCTACGACAACAACAGGTGGTATGAGGGACGACAGG
ATTGATCCATGTGCTGGAGCCATGGCCGCTTATCTCAAGTAAGGAACTGG
CGGTATTCTATGTCTCCGGGGTTCCCATCTCACTTGTCGTGCGCTCGAAG
GAGTAAAATCTTACGTGATGGTGCTTGCTCCGCTTCCTGTATTTAGTAGT
ATTGGCCCCTCCTCTCAGTTACATATGCCATGTCACATCATCATAGCGAG
ACATGATATCGAAATCATGCTTCTCATAAAAACGTGCAGAGTCAGGTTAT
TTTCGAATAGTTGAACCACTTGATGTTGCCGCTGCACGTGGTGGTGTGTA
TGACATGATTTACGCATTGACTCCATTCACATACATTTGCCACGACATAT
GTACAGTTTTTTGTTCGAAGTCATGTCAAATTTGCTCTTTTCTTGGACAC
TGGTACTGGAAGATTCGCTTTTACTACTGGTACATGAACTTTTTCAGTTC
CCTACCTAACCGCTGGACTTTTTCAGGCTGCGATGGTGTCTGTTCCGGCG
TCGAACGCTTCATCGCACCCACATACTATAGTAGTACATACGAGTATACT
ACCAGTATCGATAATTTTGTGTAATTCCACGTTTACCCTGAACAAACAGA
TGTGTAGAAGGAAAGACGGCGGGCCTAAGGGATGGTGACGAGTGCGCGGA
GGAGGGTAGCGAGTATAAGGCGTGCCGACAACGAGTCAAGGCGGCGAAGC
GAGGCAATAGCACTAGTAACACCACTTCCACGGCGGTCTTAGCGAAGGGC
GAAAAGTCGCTTCGATAGCAAGAATCGAGTGTCATACTTTCGGCCCTGTG
GTTTTATTTTGGGTAAATAGATTCTCAAAGGTATACATATATATATATAT
ATATATATCGTCGTTTTTGGTCAGTTTCAGGTACATGCGCACGCGATAAG
TTGGGGGTGTTTACTGGCACGTTGGAATGACTCAAATTATATCGTATTTG
CTCTGTAATCTTGTGGCTGCTTGCCCTCCACATGCCCAGTGAAAAGAAAC
GGGCAGAAACATAGGAAGTGGCGCATTTCTGTGTTCCGGACGATCTGGGA
ATCCCCTATAATCCTGGCACTGCGTCATGCCCCGAAATCGCCAGGTTTAC
TGAATCCTGTAGTAATTCCAGATACTACTTGATATTTCACGATTTTTAGC
GGTCGGTCGAAATTCGCGTAGATCAACAGCTGTAACGATTTGATAGTCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1255:245..1543+

>mRNA_H-paniculata_contig1255.1601.1 ID=mRNA_H-paniculata_contig1255.1601.1|Name=mRNA_H-paniculata_contig1255.1601.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig1255:245..1543+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGGGACGACAGGATTGATCCATGTGCTGGAGCCATGGCCGCTTATCT
CAAATGAGGGACGACAGGATTGATCCATGTGCTGGAGCCATGGCCGCTTA
TCTCAAATGTGTAGAAGGAAAGACGGCGGGCCTAAGGGATGGTGACGAGT
GCGCGGAGGAGGGTAGCGAGTATAAGGCGTGCCGACAACGAGTCAAGGCG
GCGAAGCGAGGCAATAGCACTAGTAACACCACTTCCACGGCGGTCTTAGC
GAAGGGCGAAAAGTCGCTTCGATAGATGTGTAGAAGGAAAGACGGCGGGC
CTAAGGGATGGTGACGAGTGCGCGGAGGAGGGTAGCGAGTATAAGGCGTG
CCGACAACGAGTCAAGGCGGCGAAGCGAGGCAATAGCACTAGTAACACCA
CTTCCACGGCGGTCTTAGCGAAGGGCGAAAAGTCGCTTCGATAG
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