mRNA_H-paniculata_contig12521.1586.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12521.1586.1
Unique NamemRNA_H-paniculata_contig12521.1586.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12521.1586.1 vs. uniprot
Match: A0A6H5L4A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A6_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 6.070e-32
Identity = 55/85 (64.71%), Postives = 76/85 (89.41%), Query Frame = 1 
Query:    1 SRFLENHDERMVEENKFVREQAQEKYCRTHDFDLIAGTYYDQKKEQDFLRTRETLMTLQGQAQQHRLPPSMRYGEGNEYDIINKE 255
            +RFLE H+ERM EE +F+RE+A+EKY RTHD+++IAG YYDQ KE++F+ +RE L+T+QG+AQQ+RLPPS+RYGEGN Y+IIN++
Sbjct:  124 NRFLEKHEERMTEEKRFLRERAEEKYRRTHDYNIIAGAYYDQDKEREFVNSREKLLTMQGRAQQYRLPPSIRYGEGNGYNIINQQ 208
[Close]
BLAST of mRNA_H-paniculata_contig12521.1586.1 vs. uniprot
Match: D8LS80_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS80_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 1.850e-31
Identity = 54/84 (64.29%), Postives = 74/84 (88.10%), Query Frame = 1 
Query:    4 RFLENHDERMVEENKFVREQAQEKYCRTHDFDLIAGTYYDQKKEQDFLRTRETLMTLQGQAQQHRLPPSMRYGEGNEYDIINKE 255
            RFLE H+ERM EE +F+RE+A+EKY RTHD+++IAG YYDQ KE+ F+ +R+ L+T+QG+AQQ+RLPPS+RYGEGN Y+IIN++
Sbjct:   46 RFLEKHEERMTEEKRFLRERAEEKYRRTHDYNIIAGAYYDQDKERKFVNSRDKLLTMQGRAQQYRLPPSIRYGEGNGYNIINQQ 129
[Close]
BLAST of mRNA_H-paniculata_contig12521.1586.1 vs. uniprot
Match: A0A482T1S9_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T1S9_9ARCH)

HSP 1 Score: 70.9 bits (172), Expect = 2.330e-12
Identity = 30/81 (37.04%), Postives = 54/81 (66.67%), Query Frame = 1 
Query:   16 NHDERMVEENKFVREQAQEKYCRTHDFDLIAGTYYDQKKEQDFLRTRETLMTLQGQAQQHRLPPSMRYGEGNEYDIINKEV 258
            NHD+R +E+ + ++    +KY   HD+D+I G +Y  +K++ +    ET+ ++QG AQ  RLPPS++Y +GN Y+++  +V
Sbjct:  132 NHDKRRLEDFEKLKTHLLKKYWDNHDYDMIKGRFYSPEKQKLYEEHLETIKSVQGTAQMERLPPSLKYSDGNSYNLLTHDV 212
[Close]
BLAST of mRNA_H-paniculata_contig12521.1586.1 vs. uniprot
Match: A0A1W0A3C8_9STRA (Gamma-tubulin complex component n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A3C8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 4.030e-8
Identity = 28/86 (32.56%), Postives = 50/86 (58.14%), Query Frame = 1 
Query:    1 SRFLENHDERMVEENKFVREQAQEKYCRTHDFDLIAGTYYDQKKEQDFLRTRETLMTLQGQAQQHRLPPSMRYGEGNEYDIINKEV 258
            +++  +HD R   E +  +  A  K+ +THDF+ + G YYD  KE++FL+ R+    + G  +  +LP   +Y  G  Y+IIN+++
Sbjct: 1249 NKYHTHHDVRSQTEAQATKNLAIMKFNQTHDFNPLLGQYYDNDKEENFLKVRDAKAKVHGVGRDDKLPYGEQYSAGRLYNIINQQI 1334
[Close]
BLAST of mRNA_H-paniculata_contig12521.1586.1 vs. uniprot
Match: A0BW51_PARTE (Uncharacterized protein n=2 Tax=Paramecium tetraurelia TaxID=5888 RepID=A0BW51_PARTE)

HSP 1 Score: 49.7 bits (117), Expect = 6.770e-5
Identity = 24/75 (32.00%), Postives = 43/75 (57.33%), Query Frame = 1 
Query:    1 SRFLENHDERMVEENKFVREQAQEKYCRTHDFDLIAGTYYDQKKEQDFLRTRETLMTLQGQAQQHRLPPSMRYGE 225
            ++FLENH+ +  E+   V     +K  R  ++D++AGT+Y+ +KEQ+F +  +      G+    R PPS ++ E
Sbjct:  177 NKFLENHESKAQEQETAVMSDINDKCKRVRNYDIVAGTFYNDEKEQEFQQKLKQDQFNHGKHFNDRFPPSWKFRE 251
[Close]
BLAST of mRNA_H-paniculata_contig12521.1586.1 vs. uniprot
Match: Q24FD2_TETTS (Uncharacterized protein n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=Q24FD2_TETTS)

HSP 1 Score: 49.7 bits (117), Expect = 6.860e-5
Identity = 24/80 (30.00%), Postives = 46/80 (57.50%), Query Frame = 1 
Query:    1 SRFLENHDERMVEENKFVREQAQEKYCRTHDFDLIAGTYYDQKKEQDFLRTRETLMTLQGQAQQHRLPPSMRYGEGNEYD 240
            +++ ENH+ ++  + + V+ +  EKY +TH F++++G  YD  +E+ F    +      G+    +LPPS+RY E   +D
Sbjct:  161 NKYTENHETKIQNDEETVKNKLDEKYRKTHKFNIVSGLLYDPDQEKAFQEQLKETNQSHGKNAILKLPPSLRYRETVIFD 240
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12521.1586.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L4A6_9PHAE6.070e-3264.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS80_ECTSI1.850e-3164.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A482T1S9_9ARCH2.330e-1237.04Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A1W0A3C8_9STRA4.030e-832.56Gamma-tubulin complex component n=1 Tax=Thraustoth... [more]
A0BW51_PARTE6.770e-532.00Uncharacterized protein n=2 Tax=Paramecium tetraur... [more]
Q24FD2_TETTS6.860e-530.00Uncharacterized protein n=1 Tax=Tetrahymena thermo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12521contigH-paniculata_contig12521:6659..6928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue4.5e-09
Seed eggNOG ortholog44056.XP_009033459.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2AXZZ@1,2S023@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004500.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size270
Cds size240
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.6344469-UTR-H-paniculata_contig12521:6658..66881622928972.6344469-UTR-H-paniculata_contig12521:6658..6688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12521 6659..6688 +
1691480687.386688-UTR-H-paniculata_contig12521:6658..66881691480687.386688-UTR-H-paniculata_contig12521:6658..6688Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12521 6659..6688 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.644632-CDS-H-paniculata_contig12521:6688..69281622928972.644632-CDS-H-paniculata_contig12521:6688..6928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12521 6689..6928 +
1691480687.3963141-CDS-H-paniculata_contig12521:6688..69281691480687.3963141-CDS-H-paniculata_contig12521:6688..6928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12521 6689..6928 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12521.1586.1prot_H-paniculata_contig12521.1586.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12521 6689..6928 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12521.1586.1

>prot_H-paniculata_contig12521.1586.1 ID=prot_H-paniculata_contig12521.1586.1|Name=mRNA_H-paniculata_contig12521.1586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MVEENKFVREQAQEKYCRTHDFDLIAGTYYDQKKEQDFLRTRETLMTLQG
QAQQHRLPPSMRYGEGNEYDIINKEVGVR*
back to top

mRNA from alignment at H-paniculata_contig12521:6659..6928+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12521.1586.1 ID=mRNA_H-paniculata_contig12521.1586.1|Name=mRNA_H-paniculata_contig12521.1586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=270bp|location=Sequence derived from alignment at H-paniculata_contig12521:6659..6928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTAGATTCTTAGAAAACCATGACGAGCGGATGGTTGAGGAGAACAAGTT
CGTACGCGAGCAGGCACAAGAAAAGTACTGCAGGACGCACGACTTTGACC
TCATCGCCGGAACGTACTACGACCAGAAGAAGGAACAAGACTTCCTGCGC
ACCCGGGAGACGTTGATGACTTTGCAAGGGCAGGCACAGCAGCATCGATT
GCCGCCGAGTATGCGGTACGGGGAGGGGAATGAGTACGATATCATCAACA
AAGAGGTGGGTGTGCGATAG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12521:6659..6928+

>mRNA_H-paniculata_contig12521.1586.1 ID=mRNA_H-paniculata_contig12521.1586.1|Name=mRNA_H-paniculata_contig12521.1586.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig12521:6659..6928+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTTGAGGAGAACAAGTTCGTACGCGAGCAGGCACAAGAAAAGTACTG
CAGGACGCACGACTTTGACCTCATCGCCGGAACGTACTACGACCAGAAGA
AGGAACAAGACTTCCTGCGCACCCGGGAGACGTTGATGACTTTGCAAGGG
CAGGCACAGCAGCATCGATTGCCGCCGAGTATGCGGTACGGGGAGGGGAA
TGAGTACGATATCATCAACAAAGAGGTGGGTGTGCGATAGATGGTTGAGG
AGAACAAGTTCGTACGCGAGCAGGCACAAGAAAAGTACTGCAGGACGCAC
GACTTTGACCTCATCGCCGGAACGTACTACGACCAGAAGAAGGAACAAGA
CTTCCTGCGCACCCGGGAGACGTTGATGACTTTGCAAGGGCAGGCACAGC
AGCATCGATTGCCGCCGAGTATGCGGTACGGGGAGGGGAATGAGTACGAT
ATCATCAACAAAGAGGTGGGTGTGCGATAG
back to top