mRNA_H-paniculata_contig1252.1584.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1252.1584.1 vs. uniprot
Match: D7FW82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW82_ECTSI) HSP 1 Score: 183 bits (465), Expect = 2.050e-42 Identity = 209/595 (35.13%), Postives = 274/595 (46.05%), Query Frame = 3
Query: 3 EHNGVAETIASEPKQAPKYLSGAPV--FARGAFVVLNI--PADDNSNHKPKPPHPIKLEDIIGKMARVTAEPKRAAGPRYHHVEVLPWEGGPDKPIKLKIKAGYLAKPPSPAAAVTDATTGASAVAAPSPGLGNAMETTSGVRQGSPPDSCRSSADGSAVPVGGTKRITVVGGADGISAEDGWPEEYGGTSRPTRRVVTRKASKAAQQAAGRRDGSCSGVRDDTDNGR----DGGDEEGAVERGCK---ESEVARGGHQAGRGKLATAGNGRKKDGAVEADSGEDEMVVDEEE-RGEEXXXXXXXXXXXXXXXXXXXXXXXXXAEHEETAMKAA--------DGEVC-------FIPVGTRVVVIELPKWSEGQRGGPKPNGKVKVDELLGKTAIVKVSPTSWYSARYHKLAFVPWPGGPVDVEITWTLPRKYITVWNPTFDYVSL-VAGARESGV-PAPQPXXXXXXXXXXXXXXXXXXIPPSPGTCVAAAKLG------------YPVGTIVVVRTVDIDPGRSLKFARGEVREAGFHELLGREGKVIRQPPANAKGVRYHMVEYQPWEDGPTRPFTWNVKMAALEVVRWPDT 1664
E +G+ E S ++ P+ + +++G VVL+ PA S P P L D++G+ ARV EP G RYH VE PWEGGPD + L+ KA L P+P +V A A S G + + T G + S+A + P G G A +S + +RP RR TR A KA +Q+ G + R +G E A E + E E G KK A+ SG D + +E +G XXXXXXX XXXX XXXXXX A KA +GE IPVGTRVVV + P S RG ++K +L+G+T +V T R+H ++F PWPGGP +W RK + + V+G+R +G PA + XXXXXXX AK G P GT+VVVR+V+ DPGR+LKFAR E EAGF E+LGREG V+ P + KG RYH+V+Y+PWE GPTRPFTWNVK+A+LEV+R P T
Sbjct: 508 EEDGIQEDEQSAGERTPRRSTDVKSSWYSKGTMVVLHCDSPAQVRSTSNPVLP----LSDLLGRPARVIREPTHRMGQRYHLVEFQPWEGGPDTVVTLRAKAKLLK--PAPLDSVF-------APAVVSDGRDSGVST-----DGGSASARLSTARAESTPAG-------AGAAQRVS------RKTVAATRPRRRS-TRGAIKATKQSVSVDAGEAGCEQPPLATARVVKREGKGNEEAEEDDMEVDVEGEXXXXXXXXXXXXXXXXXIGAKKQSAIVHSSGGDNSMAEERVGKGRSKEEEXXXXXXXGXXXXKGQXXXXXXXXXXXVATKAVLDTMAMPKEGEPLDDPRKPMLIPVGTRVVVKQAPAESSRPRGC-----QLKTSDLVGRTGVVTKMATHVQGTRHHMVSFEPWPGGP-STTTSWNFARKRLALCPSGISSGGASVSGSRGAGAAPASRREGKAKGAGAEAXXXXXXXXXXXXXXXXXGAKEGGRARPTPPNTENLPAGTVVVVRSVETDPGRTLKFARDETYEAGFQEVLGREGIVVSGPTSTTKGFRYHLVQYEPWEGGPTRPFTWNVKVASLEVLRRPRT 1064
BLAST of mRNA_H-paniculata_contig1252.1584.1 vs. uniprot
Match: A0A6H5L1S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1S6_9PHAE) HSP 1 Score: 178 bits (452), Expect = 8.470e-41 Identity = 210/562 (37.37%), Postives = 264/562 (46.98%), Query Frame = 3
Query: 78 FARGAFVVLNI--PADDNSNHKPKPPHPIKLEDIIGKMARVTAEPKRAAGPRYHHVEVLPWEGGPDKPIKLKIKAGYLAKPPSPAAAVTDATTGASAVAAPSPGLGNAMETTSGVRQGSPPDSCRSSADGSAVPVGGTKRITVVGGADGISAEDGWPEEYGGTSRPTRRVVTRKASKAAQQAAGRRDGSCSGVRDDTDNGR----DGGDEEGAVERGCK---ESEVARGGHQAGRGKLATAGNGRKKDGAVEADSGEDEMVVDE---EERGEEXXXXXXXXXXXXXXXXXXXXXXXXXAEHEETAMKAADGEVC-------FIPVGTRVVVIELPKWSEGQRGGPKPNGKVKVDELLGKTAIVKVSPTSWYSARYHKLAFVPWPGGPVDVEITWTLPRKYITVW-----------NPTFDYVSLVAGARESGVPAPQPXXXXXXXXXXXXXXXXXXIPPSPGTCVAAAKLG---YPVGTIVVVRTVDIDPGRSLKFARGEVREAGFHELLGREGKVIRQPPANAKGVRYHMVEYQPWEDGPTRPFTWNVKMAALEVVRWPDT 1664
+++G VVL+ PA S P P L D++G+ ARV EP G RYH VE PWEGGPD + L+ KA L P+P +V SA A S G DS S+ GSA T R + G A + +RP RR TR KA +Q+ G G + R +G + A E + E E KK A+ GE + E + R EE XXXXXXXXXXXXXXXXXX A +T +GE IPVGTRVVV + P S RG ++K +L+G+T +V T R+H ++F PWPGGP +W RK + + + T + A RE XXXXXXXXXXXXXXXX G P GT+VVVR+V+ DPGR+LKFAR E EAGF E+LGREG V+ P + KG RYH+V+Y+PWE GPTRPFTWNVK+A+LEV+R P T
Sbjct: 535 YSKGTMVVLHCDSPAQVRSTSNPVLP----LSDLLGRPARVIQEPTHRMGQRYHLVEFQPWEGGPDTVVTLRAKAKLLK--PAPLDSV-------SAPAVVSDGR----------------DSGVSTDGGSARARLSTARAEIT--PSGAGAAQRVSRKTVAATRPRRRS-TRGTIKATKQSVSVDAGEAGGEQPPPATARVVKREGKGNKEAEENDMEVDVEGEXXXXXXXXXXXXXXXDAISDKKQSAIIHSPGEYSSMTKERVGKGRSEEEKXXXXXXXXXXXXXXXXXXEGVAIAAVLDTMAMPKEGEPLDDPRKPMLIPVGTRVVVKQAPAESSRPRGC-----QLKTSDLVGRTGVVTKMATHVQGTRHHMVSFEPWPGGP-STTTSWNFARKRLALCPSGIGSGGASVSGTRGVGAAPASRREGNAKGAAAGAXXXXXXXXXXXXXXXXXXXXXGGAARPTPPNTENLPAGTVVVVRSVETDPGRTLKFARDETYEAGFQEVLGREGIVVSGPTSTTKGFRYHLVQYEPWEGGPTRPFTWNVKVASLEVLRHPPT 1058 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1252.1584.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1252.1584.1 >prot_H-paniculata_contig1252.1584.1 ID=prot_H-paniculata_contig1252.1584.1|Name=mRNA_H-paniculata_contig1252.1584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=2099bp MARVTAEPKRAAGPRYHHVEVLPWEGGPDKPIKLKIKAGYLAKPPSPAAAback to top mRNA from alignment at H-paniculata_contig1252:104..10695- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1252.1584.1 ID=mRNA_H-paniculata_contig1252.1584.1|Name=mRNA_H-paniculata_contig1252.1584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10592bp|location=Sequence derived from alignment at H-paniculata_contig1252:104..10695- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1252:104..10695- >mRNA_H-paniculata_contig1252.1584.1 ID=mRNA_H-paniculata_contig1252.1584.1|Name=mRNA_H-paniculata_contig1252.1584.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=12594bp|location=Sequence derived from alignment at H-paniculata_contig1252:104..10695- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |