mRNA_H-paniculata_contig12515.1583.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12515.1583.1
Unique NamemRNA_H-paniculata_contig12515.1583.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12515.1583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12515contigH-paniculata_contig12515:3282..3899 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size619
Cds size618
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.352415-CDS-H-paniculata_contig12515:3281..38991622928972.352415-CDS-H-paniculata_contig12515:3281..3899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12515 3282..3899 +
1691480687.2115774-CDS-H-paniculata_contig12515:3281..38991691480687.2115774-CDS-H-paniculata_contig12515:3281..3899Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12515 3282..3899 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12515.1583.1prot_H-paniculata_contig12515.1583.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12515 3282..3899 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12515.1583.1

>prot_H-paniculata_contig12515.1583.1 ID=prot_H-paniculata_contig12515.1583.1|Name=mRNA_H-paniculata_contig12515.1583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MGRDRDWDWDRERDNSYHRRHSYTNRDNDDARRRNIYGGGGNRSRSSSPV
YSGFDVQRDDSGMCKRRVGGGGEWHPRGMYRSGGAGRSVDMNGKGDEKEH
GWHNSVGDGIVYDEQNRDNSINPSKTLESQLRRPRSDCGTSTAVATGHGS
ENEADDPITVDSGSGEEEQEQQNHLDVHQHQQHQQRRSQQRPPSSSLPPP
PHHINP
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mRNA from alignment at H-paniculata_contig12515:3282..3899+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12515.1583.1 ID=mRNA_H-paniculata_contig12515.1583.1|Name=mRNA_H-paniculata_contig12515.1583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig12515:3282..3899+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGAGATCGAGACTGGGACTGGGACAGGGAGAGGGACAACAGCTA
CCACCGAAGGCACAGCTACACCAACAGGGACAACGATGATGCCCGCAGGC
GCAATATCTACGGTGGGGGTGGCAATCGCAGCCGGAGCAGCAGCCCAGTG
TACTCTGGATTTGATGTCCAGAGAGATGACAGCGGTATGTGCAAAAGGAG
AGTCGGCGGCGGCGGGGAGTGGCATCCGCGTGGCATGTACAGAAGCGGTG
GTGCTGGACGCAGTGTAGATATGAATGGCAAAGGTGATGAGAAGGAGCAC
GGTTGGCACAACAGTGTTGGCGATGGCATCGTCTACGATGAGCAGAACCG
TGATAACAGCATCAACCCCAGCAAAACCTTAGAGTCTCAGTTACGTCGCC
CTCGCTCTGACTGCGGCACCAGCACCGCCGTTGCTACTGGGCACGGCAGT
GAGAACGAGGCCGATGATCCTATCACGGTGGACTCTGGTTCTGGGGAGGA
AGAACAAGAGCAGCAGAACCACCTTGATGTGCACCAGCACCAGCAACACC
AGCAACGCAGGTCACAACAGCGACCACCTTCGTCTTCGCTTCCTCCTCCA
CCTCATCACATTAATCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig12515:3282..3899+

>mRNA_H-paniculata_contig12515.1583.1 ID=mRNA_H-paniculata_contig12515.1583.1|Name=mRNA_H-paniculata_contig12515.1583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig12515:3282..3899+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGAGATCGAGACTGGGACTGGGACAGGGAGAGGGACAACAGCTA
CCACCGAAGGCACAGCTACACCAACAGGGACAACGATGATGCCCGCAGGC
GCAATATCTACGGTGGGGGTGGCAATCGCAGCCGGAGCAGCAGCCCAGTG
TACTCTGGATTTGATGTCCAGAGAGATGACAGCGGTATGTGCAAAAGGAG
AGTCGGCGGCGGCGGGGAGTGGCATCCGCGTGGCATGTACAGAAGCGGTG
GTGCTGGACGCAGTGTAGATATGAATGGCAAAGGTGATGAGAAGGAGCAC
GGTTGGCACAACAGTGTTGGCGATGGCATCGTCTACGATGAGCAGAACCG
TGATAACAGCATCAACCCCAGCAAAACCTTAGAGTCTCAGTTACGTCGCC
CTCGCTCTGACTGCGGCACCAGCACCGCCGTTGCTACTGGGCACGGCAGT
GAGAACGAGGCCGATGATCCTATCACGGTGGACTCTGGTTCTGGGGAGGA
AGAACAAGAGCAGCAGAACCACCTTGATGTGCACCAGCACCAGCAACACC
AGCAACGCAGGTCACAACAGCGACCACCTTCGTCTTCGCTTCCTCCTCCA
CCTCATCACATTAATCCCATGGGTCGAGATCGAGACTGGGACTGGGACAG
GGAGAGGGACAACAGCTACCACCGAAGGCACAGCTACACCAACAGGGACA
ACGATGATGCCCGCAGGCGCAATATCTACGGTGGGGGTGGCAATCGCAGC
CGGAGCAGCAGCCCAGTGTACTCTGGATTTGATGTCCAGAGAGATGACAG
CGGTATGTGCAAAAGGAGAGTCGGCGGCGGCGGGGAGTGGCATCCGCGTG
GCATGTACAGAAGCGGTGGTGCTGGACGCAGTGTAGATATGAATGGCAAA
GGTGATGAGAAGGAGCACGGTTGGCACAACAGTGTTGGCGATGGCATCGT
CTACGATGAGCAGAACCGTGATAACAGCATCAACCCCAGCAAAACCTTAG
AGTCTCAGTTACGTCGCCCTCGCTCTGACTGCGGCACCAGCACCGCCGTT
GCTACTGGGCACGGCAGTGAGAACGAGGCCGATGATCCTATCACGGTGGA
CTCTGGTTCTGGGGAGGAAGAACAAGAGCAGCAGAACCACCTTGATGTGC
ACCAGCACCAGCAACACCAGCAACGCAGGTCACAACAGCGACCACCTTCG
TCTTCGCTTCCTCCTCCACCTCATCACATTAATCCC
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