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Homology
BLAST of mRNA_H-paniculata_contig12512.1582.1 vs. uniprot
Match: D8LAW6_ECTSI (TNFR-Cys domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW6_ECTSI) HSP 1 Score: 161 bits (408), Expect = 2.980e-44 Identity = 91/159 (57.23%), Postives = 106/159 (66.67%), Query Frame = 1
Query: 1 CTQCPFGTREVGACEHRSDRTCEACSECGEAEYESRSCSTGGNXXXXXXXXXXSMSPAVAEACRDSPVVGYWKMENCCETAEGESIPCADVLIEDLRISARNGHRHWVFDRTIPSQYWGKGAVARDGVVGRDHMIEIELRPGAKSVFDDPRYLGQEGPS 477
CT C FGTRE+G C+ SDR CEAC+EC +AEYESR C T G XXXXXXXXXX V W+ ENCCETA GE IPC DV +E+LR+SA G W + R P+ G G ARDGV RD +IE+E R GAK+VFDDPRY+GQEGP+
Sbjct: 343 CTPCAFGTREIGECQQASDRVCEACTECEDAEYESRECRTSGEXXXXXXXXXXXXXXXXXXXXXXXRSVRQWQTENCCETAVGEKIPCPDVALENLRVSAATGR--WQWGRGQPA---GGGDRARDGVTPRDRLIEVEFRAGAKTVFDDPRYVGQEGPT 496
BLAST of mRNA_H-paniculata_contig12512.1582.1 vs. uniprot
Match: A0A7S3NIR6_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIR6_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 7.260e-8 Identity = 25/55 (45.45%), Postives = 36/55 (65.45%), Query Frame = 1
Query: 178 AEACRDSPVVGYWKMENCCETAEGESIPCADVLIEDLRISARNGHRHWVFDRTIP 342
+E+CRD+ + +W+ ENCC +G + C + +LRISAR+ RHWVFD T P
Sbjct: 966 SESCRDAAL--WWRRENCCHDQDGVQVHCNKLPASNLRISARDNRRHWVFDPTYP 1018
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 162.2 |
| Seed ortholog evalue | 2.1e-37 |
| Seed eggNOG ortholog | 2880.D8LAW6 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2CZBK@1,2S9J3@2759 |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-27_006180.1 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 498 |
| Cds size | 498 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12512.1582.1 >prot_H-paniculata_contig12512.1582.1 ID=prot_H-paniculata_contig12512.1582.1|Name=mRNA_H-paniculata_contig12512.1582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=166bp
CTQCPFGTREVGACEHRSDRTCEACSECGEAEYESRSCSTGGNDRICESC
LRCSMSPAVAEACRDSPVVGYWKMENCCETAEGESIPCADVLIEDLRISA
RNGHRHWVFDRTIPSQYWGKGAVARDGVVGRDHMIEIELRPGAKSVFDDP
RYLGQEGPSLGAENA* back to topmRNA from alignment at H-paniculata_contig12512:4389..7194- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12512.1582.1 ID=mRNA_H-paniculata_contig12512.1582.1|Name=mRNA_H-paniculata_contig12512.1582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2806bp|location=Sequence derived from alignment at H-paniculata_contig12512:4389..7194- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTACGCAATGTCCCTTCGGGACGAGAGAGGTCGGGGCGTGCGAACATAG
ATCCGATCGGACCTGCGAGGCGTGCTCAGAGTGCGGAGAGGCTGAATATG
AGAGCCGGTCATGCAGCACGGGGGGCAACGATCGAATATGCGAGTCTTGT
TTAAGGTGGGGAAGAATAGCCTCTTCATGCTACGTAAAGCAAAGCTTCTT
CATGCTTCATGGTACAAACAACAAGTGCCGCGTTCGTGAAATGATCAATA
CTTTCCGTCCATTTTCACACACACACACACACACACACACACACACATAT
ATATATTGGCAAATATCAGAGGTTTCAAATCCGGTGTGGGCATGCAAAAA
ACACGAAACACGAATAATGTTTTACCAGCATGTCCAATATGCCAAACATT
TACATGGCGAACACGAAGTGAAACTTTAGAAAACACACAAGGACAGTGAC
GTTGATAACTTGGCATCACTCTGACTCCCACGAAGTGGTCTGGCTTCATT
CCGTTTACAAAAGACTCTACCAGATTGGCGAGCCACGTTTAGTTCCCTTC
CAAGTTAGTGATACGACTCATATTGCCTAGTCTCTCTATATCCCCAACTT
GACCCACTTTCTATGGGCAGAAAAATCCGTCAGAATATCCAAACCGCGGT
GTCCCACATTCCTCCCATGTATACCAACTACCTGACGGCACTCCGATTCA
GGTGTTCGATGTCCCCTGCTGTGGCTGAAGCATGCAGAGATTCTCCAGTT
GTGGGATATTGGAAGATGGAAAATTGCTGCGAGACAGCTGAAGGGGAGAG
TATACCTTGCGCGGACGTTCTCATCGAGGACTTGAGGATTTCAGCCCGGA
ACGGACATCGCCATTGGGTTTTCGATCGAACTATTCCATCCGTGAGATAA
AAAAGATTGTTATCTTTTGTTCAGTATTTTTGTGTGTGTAATTCGTTTAT
TGCACGCTCTTGGGTTTTGTGGGACGACGGAATTTCAGCAAAGAGCTCCG
AGAATTGAACCAGAAGAAAAACAGCATTAGCACCACCGGCAATGCGGTGT
GCGATGGTAGTGATGAAGTTTGTGGTTTCATCCAGTCGATTGATAGTGTC
AGTGCTCTTGGGGCATTTGTTGAGCGTCCTTACAGTCTCAGTAGTGTGAT
AGGCAGTGTCGCCATAGTCGAGATCTTTCCATAGCACTTTGTCTTGATCT
TTCATTGTAGTGCATCTAACACGTTTTACGAAGCCCGGTTGCACAAACAG
TTCGTTTGCCATGACCAGGGGTTTTCATGTGAATTCGAGAGGTAAAATCG
GACACGTTGATGGCACGTCTCAGCCCTGAGAAAGGAGTCGACTTCACCTA
CTTTGACGGACATTCCTTTGAGAACGATTCGCGGAGTGCCTGTGGCTGTT
TGCTAGCAGAACGAGCCCAATTTTATGGTTCGGTCAGAGAAGAATTGTTG
CGTGTAGCTTGTTAGATACGAATGAATCTCACGATGCACAGGCCGTTACC
GTAAATCCGTGACGTCACAGGGTTTTGAGAAAGCGAGCTGTGTATGCCGT
GTATTTCCAGCACAACAACTGTGTTGTGAGGATACCTGGCAGCAGTAACA
GCGCCGCGCATCGTACTTTTTTTGCGGATTTTTTATAATGATGGGAAAAT
AATGACCATTTTGTGCGAAAATCTGAACGAAATGGCATTGTCTTTCTGTT
CTCAGCACCTTGGACCTGCAAGCCTTGCATGATCCTTCGTTGGGTAATCT
TCGCCTTTCAACGCCGACCACCCCTCACCAACTTCCTCGAAATGTGGACA
TATCGGAGTGAGTTTGGTCACTGATTTTGCAAAATATCTTACAGCAAATA
GACGATCAATTCGTTCTGAGACACATACACACATCCGTGGCTCTCATTTT
GGTTATGAAGGAGTTCGAGATAGTACGGATGGCGGATGATGATAGTATTT
TTTAGGGTTTGGATGTGGAGGGGTGGGGTGGGGTTATGTATGGTGTTTTG
GTTAGGAATGGGGACAAGAAAAATGGAACGGCGTTTTCGAGTTCGTCCGT
GGGTGTTTTTTTTCAATTATCTCACGGGATTCAAACACGCGACCGGGGGT
ATGTAATGTACACAAGTTGCCTGTGTTATCAAAACGGTAATTTTTTCTGC
AGATGCAGTTTTCTGTGTTCTCTACGCATTTTTGTGTTAATGCGCCAAAA
CCGCCTGCTGAATACCTTGTGACTGCTATGAATCCATAGTGAAAAGCGCG
AGGTTCAGGAAGAACCCTTCCATCCAAAATAGCGATGAAAAGCGAGGGGT
TTTGCGCCACTCGTGAACAGCGTAGGAGGTTCCGATGGGCGATAACCGCG
CGCTTAATACTCCATACATATTATGGGGATAAAAGCTCCTTGGACTTATG
GGCCATGGTTTACTATTTATCTTTGTCTTAGCGGGCTATTTAACATAAAA
CCGTATGAGTGATTCTGGCAATACTTCATAATCGCCCATGCGCGTTACGT
CTTCTAACAAATTGGAAAAAGCGATTTCTGCATGCCAAAAACCGTGTGTT
CATGCACAGGCATATATATATGGAACCATTGATCGACGTGTTACGTTTGT
CTCTTCTCTGACAAATACGTTTTCCTGCCGTCAAGGTCGATGGATACACC
CAGCAATATTGGGGCAAGGGAGCGGTCGCTCGAGACGGGGTGGTTGGGCG
AGACCATATGATCGAAATCGAGTTGCGGCCGGGAGCTAAAAGCGTATTCG
ACGACCCTCGCTATCTCGGCCAGGAGGGACCGAGCTTGGGAGCGGAGAAT
GCTTGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig12512:4389..7194- >mRNA_H-paniculata_contig12512.1582.1 ID=mRNA_H-paniculata_contig12512.1582.1|Name=mRNA_H-paniculata_contig12512.1582.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=996bp|location=Sequence derived from alignment at H-paniculata_contig12512:4389..7194- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTACGCAATGTCCCTTCGGGACGAGAGAGGTCGGGGCGTGCGAACATAG
ATCCGATCGGACCTGCGAGGCGTGCTCAGAGTGCGGAGAGGCTGAATATG
AGAGCCGGTCATGCAGCACGGGGGGCAACGATCGAATATGCGAGTCTTGT
TTAAGTGTACGCAATGTCCCTTCGGGACGAGAGAGGTCGGGGCGTGCGAA
CATAGATCCGATCGGACCTGCGAGGCGTGCTCAGAGTGCGGAGAGGCTGA
ATATGAGAGCCGGTCATGCAGCACGGGGGGCAACGATCGAATATGCGAGT
CTTGTTTAAGGTGTTCGATGTCCCCTGCTGTGGCTGAAGCATGCAGAGAT
TCTCCAGTTGTGGGATATTGGAAGATGGAAAATTGCTGCGAGACAGCTGA
AGGGGAGAGTATACCTTGCGCGGACGTTCTCATCGAGGACTTGAGGATTT
CAGCCCGGAACGGACATCGCCATTGGGTTTTCGATCGAACTATTCCATCC
GTGTTCGATGTCCCCTGCTGTGGCTGAAGCATGCAGAGATTCTCCAGTTG
TGGGATATTGGAAGATGGAAAATTGCTGCGAGACAGCTGAAGGGGAGAGT
ATACCTTGCGCGGACGTTCTCATCGAGGACTTGAGGATTTCAGCCCGGAA
CGGACATCGCCATTGGGTTTTCGATCGAACTATTCCATCCCAATATTGGG
GCAAGGGAGCGGTCGCTCGAGACGGGGTGGTTGGGCGAGACCATATGATC
GAAATCGAGTTGCGGCCGGGAGCTAAAAGCGTATTCGACGACCCTCGCTA
TCTCGGCCAGGAGGGACCGAGCTTGGGAGCGGAGAATGCTTGACAATATT
GGGGCAAGGGAGCGGTCGCTCGAGACGGGGTGGTTGGGCGAGACCATATG
ATCGAAATCGAGTTGCGGCCGGGAGCTAAAAGCGTATTCGACGACCCTCG
CTATCTCGGCCAGGAGGGACCGAGCTTGGGAGCGGAGAATGCTTGA back to top
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