mRNA_H-paniculata_contig12510.1581.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12510.1581.1
Unique NamemRNA_H-paniculata_contig12510.1581.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: D7FP69_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP69_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.760e-39
Identity = 72/90 (80.00%), Postives = 82/90 (91.11%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAGVENLDLSSVVGSSHFNYNRRMPEIL 270
            GVIENV LLG PVG T ARWERVAR+ HGRVINGYS SD I+G+VFRA+SLSLSV+G+QKV+A GVEN+DLSSVVGS+HFNYNR+MPEIL
Sbjct:  831 GVIENVCLLGAPVGATAARWERVARMAHGRVINGYSKSDVIIGLVFRAKSLSLSVSGIQKVSAVGVENVDLSSVVGSNHFNYNRKMPEIL 920
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BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: A0A835Z4D9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 6.350e-24
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAGVENLDLSSVVGSSHFNYNRRMPEIL 270
            G+IEN  LLG PVG +  RWERVAR+VHGR+INGY   D ILG+++R R LS+SVAG+Q + +  VEN DLS  + S H  Y  R+PEI+
Sbjct:  150 GIIENAVLLGAPVGVSPKRWERVARVVHGRLINGYFKKDGILGLIYRIRRLSVSVAGLQPIASRAVENADLSPAL-SQHMQYCSRVPEIM 238
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BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: A0A8B9RNC0_ASTMX (Transmembrane and coiled-coil domains 4 n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A8B9RNC0_ASTMX)

HSP 1 Score: 89.4 bits (220), Expect = 3.530e-19
Identity = 43/92 (46.74%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAG--VENLDLSSVVGSSHFNYNRRMPEIL 270
            GV+E+V LLG PV G+   W+R++R+V G+++NGY   D++LG ++R+ S+ LSVAG+Q +N++   + N+DLSSVV + H +Y R+M  IL
Sbjct:  186 GVVEDVVLLGAPVDGSEKTWDRLSRVVAGKIVNGYCRGDWLLGFLYRSSSVQLSVAGLQPINSSARRIVNVDLSSVV-NGHLDYMRQMDTIL 276
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BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: A0A3B1J8V7_ASTMX (Transmembrane and coiled-coil domains 4 n=2 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1J8V7_ASTMX)

HSP 1 Score: 89.4 bits (220), Expect = 7.940e-19
Identity = 43/92 (46.74%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAG--VENLDLSSVVGSSHFNYNRRMPEIL 270
            GV+E+V LLG PV G+   W+R++R+V G+++NGY   D++LG ++R+ S+ LSVAG+Q +N++   + N+DLSSVV + H +Y R+M  IL
Sbjct:  424 GVVEDVVLLGAPVDGSEKTWDRLSRVVAGKIVNGYCRGDWLLGFLYRSSSVQLSVAGLQPINSSARRIVNVDLSSVV-NGHLDYMRQMDTIL 514
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BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: Q4SCC9_TETNG ((spotted green pufferfish) hypothetical protein (Fragment) n=1 Tax=Tetraodon nigroviridis TaxID=99883 RepID=Q4SCC9_TETNG)

HSP 1 Score: 82.8 bits (203), Expect = 9.640e-19
Identity = 42/92 (45.65%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAG--VENLDLSSVVGSSHFNYNRRMPEIL 270
            GV+E+V LLG PV G+   WE++ R+V G+++NGY   D++LG ++R+ +  LSVAG+Q V+     + N+DLSSVV + H +Y R+M  IL
Sbjct:    2 GVVEDVVLLGAPVDGSEKAWEKMTRVVAGKIVNGYCRGDWLLGFLYRSSAAQLSVAGLQPVHNQDRRIINVDLSSVV-NGHLDYMRQMDTIL 92
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BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: A0A8C5FZ84_9TELE (Transmembrane and coiled-coil domains 4 n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5FZ84_9TELE)

HSP 1 Score: 88.6 bits (218), Expect = 1.470e-18
Identity = 44/92 (47.83%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAG--VENLDLSSVVGSSHFNYNRRMPEIL 270
            GV+E+V LLG PV G+   W+R+ R+V GR++NGY   D++LG ++R+ +  LSVAG+Q +N     +EN+DLSSVV   H +Y R+M  IL
Sbjct:  429 GVVEDVVLLGAPVDGSEKAWQRMTRVVAGRIVNGYCRGDWLLGFLYRSSAAQLSVAGLQPINIQDRRIENVDLSSVV-KGHLDYMRQMETIL 519
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BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: UPI000F5FA003 (transmembrane and coiled-coil domain-containing protein 4 n=5 Tax=Eupercaria TaxID=1489922 RepID=UPI000F5FA003)

HSP 1 Score: 88.6 bits (218), Expect = 1.470e-18
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAG--VENLDLSSVVGSSHFNYNRRMPEIL 270
            GV+E+V LLG PV GT   WER+ R+V G+++NGY   D++LG ++R+ S  LSVAG+Q +N     + N+DLSSVV + H +Y R+M  IL
Sbjct:  423 GVVEDVVLLGAPVDGTEKAWERMTRVVAGKIVNGYCRGDWLLGFLYRSSSAQLSVAGLQPINIQDRRIINVDLSSVV-NGHLDYMRQMDTIL 513
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BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: A0A672J3C4_SALFA (Uncharacterized protein n=1 Tax=Salarias fasciatus TaxID=181472 RepID=A0A672J3C4_SALFA)

HSP 1 Score: 88.2 bits (217), Expect = 2.010e-18
Identity = 45/92 (48.91%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAG--VENLDLSSVVGSSHFNYNRRMPEIL 270
            GV+E+V LLG PV G+   WER+AR+V G+++NGY   D++LG ++R+ +  LSVAG+Q VN     + N+DLSSVV   H +Y R+M  IL
Sbjct:  429 GVVEDVVLLGAPVDGSEKAWERMARVVAGKIVNGYCRGDWLLGFLYRSSAAQLSVAGLQPVNVQDRRIVNVDLSSVV-KGHLDYMRQMDTIL 519
[Close]
BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: A0A8D0AU81_SANLU (Transmembrane and coiled-coil domains 4 n=1 Tax=Sander lucioperca TaxID=283035 RepID=A0A8D0AU81_SANLU)

HSP 1 Score: 87.0 bits (214), Expect = 2.040e-18
Identity = 43/92 (46.74%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAG--VENLDLSSVVGSSHFNYNRRMPEIL 270
            GV+E+V LLG PV G+   WER++R+V G+++NGY   D++LG ++R+ S  +SVAG+Q +N     + N+DLSSVV   H +Y R+M  IL
Sbjct:  186 GVVEDVVLLGAPVDGSEKAWERISRVVAGKIVNGYCRGDWLLGFLYRSSSAQMSVAGLQPINIQDRRIINVDLSSVV-KGHLDYMRQMDTIL 276
[Close]
BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Match: A0A8C3ZWE6_9TELE (Transmembrane and coiled-coil domains 4 n=1 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C3ZWE6_9TELE)

HSP 1 Score: 87.0 bits (214), Expect = 2.080e-18
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARSLSLSVAGVQKVNAAG--VENLDLSSVVGSSHFNYNRRMPEIL 270
            GV+E+V LLG PV G+   WER++R+V GR++NGY   D++LG ++R+ S+ LSVAG+Q ++ +   + N+DLSSVV   H +Y R+M  IL
Sbjct:  186 GVVEDVILLGAPVDGSDKAWERLSRVVAGRIVNGYCRGDWLLGFLYRSSSVQLSVAGLQPISLSNHRIINVDLSSVV-KGHLDYMRQMDTIL 276
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12510.1581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP69_ECTSI1.760e-3980.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z4D9_9STRA6.350e-2456.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8B9RNC0_ASTMX3.530e-1946.74Transmembrane and coiled-coil domains 4 n=1 Tax=As... [more]
A0A3B1J8V7_ASTMX7.940e-1946.74Transmembrane and coiled-coil domains 4 n=2 Tax=As... [more]
Q4SCC9_TETNG9.640e-1945.65(spotted green pufferfish) hypothetical protein (F... [more]
A0A8C5FZ84_9TELE1.470e-1847.83Transmembrane and coiled-coil domains 4 n=1 Tax=Go... [more]
UPI000F5FA0031.470e-1848.91transmembrane and coiled-coil domain-containing pr... [more]
A0A672J3C4_SALFA2.010e-1848.91Uncharacterized protein n=1 Tax=Salarias fasciatus... [more]
A0A8D0AU81_SANLU2.040e-1846.74Transmembrane and coiled-coil domains 4 n=1 Tax=Sa... [more]
A0A8C3ZWE6_9TELE2.080e-1847.83Transmembrane and coiled-coil domains 4 n=1 Tax=De... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12510contigH-paniculata_contig12510:6322..6939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.0
Seed ortholog evalue2.7e-34
Seed eggNOG ortholog2880.D7FP69
Preferred nameTMCO4
KEGG koko:K14773
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0006810,GO:0008150,GO:0016020,GO:0016021,GO:0016192,GO:0016298,GO:0016787,GO:0016788,GO:0031224,GO:0044425,GO:0051179,GO:0051234
EggNOG free text desc.Protein of unknown function (DUF726)
EggNOG OGsKOG2385@1,KOG2385@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.002973-CDS-H-paniculata_contig12510:6321..64111622928972.002973-CDS-H-paniculata_contig12510:6321..6411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12510 6322..6411 -
1691480687.1583037-CDS-H-paniculata_contig12510:6321..64111691480687.1583037-CDS-H-paniculata_contig12510:6321..6411Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12510 6322..6411 -
1622928972.0148144-CDS-H-paniculata_contig12510:6759..69391622928972.0148144-CDS-H-paniculata_contig12510:6759..6939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12510 6760..6939 -
1691480687.1728008-CDS-H-paniculata_contig12510:6759..69391691480687.1728008-CDS-H-paniculata_contig12510:6759..6939Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12510 6760..6939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12510.1581.1prot_H-paniculata_contig12510.1581.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12510 6322..6939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12510.1581.1

>prot_H-paniculata_contig12510.1581.1 ID=prot_H-paniculata_contig12510.1581.1|Name=mRNA_H-paniculata_contig12510.1581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
GVIENVALLGTPVGGTRARWERVARIVHGRVINGYSGSDFILGMVFRARS
LSLSVAGVQKVNAAGVENLDLSSVVGSSHFNYNRRMPEIL
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mRNA from alignment at H-paniculata_contig12510:6322..6939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12510.1581.1 ID=mRNA_H-paniculata_contig12510.1581.1|Name=mRNA_H-paniculata_contig12510.1581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=618bp|location=Sequence derived from alignment at H-paniculata_contig12510:6322..6939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTGATTGAGAACGTGGCTTTACTTGGGACGCCGGTTGGCGGGACGCG
TGCTCGATGGGAGCGCGTGGCCAGGATAGTGCATGGGAGGGTGATCAACG
GGTATTCGGGGTCGGACTTCATCCTAGGCATGGTGTTCAGGGCGAGGAGC
TTGTCGCTTTCCGTTGCTGGTGTCCAGAAGGTGTGATCCCTGCTGCTGCT
ATATCTTTTGATATCACGATTAAGTAGATGGAAATATCGCGTTGAACTTG
TCGTCAGCTGGATTCTCGTGACGGGTCAGGGTTGACGTTGCTTGGCTTTC
ATGTTCCATGCTGTTTATGGAAGGCGTATCGTGCGTCACGCTGTATCGCT
TAGAGCCTGTCCTCCTTTATCTCTAACACGCAAGTGTCAGTATTTTGACA
TTTTTGGGTTACGGCTGGCGACCTTAGAGTGCTCTTCATGCCTTCACTGC
GAGTGTTCATGTGACCACCACCTGCACTCCCTACCGTGTCCCGAAAATCT
GTTGTTGGTCGTTGAAATTGTCGAAAAGGTGAATGCAGCCGGTGTTGAAA
ACTTGGATCTGTCATCGGTGGTCGGGTCGAGCCACTTCAACTACAACCGG
CGCATGCCTGAGATATTG
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Coding sequence (CDS) from alignment at H-paniculata_contig12510:6322..6939-

>mRNA_H-paniculata_contig12510.1581.1 ID=mRNA_H-paniculata_contig12510.1581.1|Name=mRNA_H-paniculata_contig12510.1581.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig12510:6322..6939- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTGATTGAGAACGTGGCTTTACTTGGGACGCCGGTTGGCGGGACGCG
TGCTCGATGGGAGCGCGTGGCCAGGATAGTGCATGGGAGGGTGATCAACG
GGTATTCGGGGTCGGACTTCATCCTAGGCATGGTGTTCAGGGCGAGGAGC
TTGTCGCTTTCCGTTGCTGGTGTCCAGAAGGGGGTGATTGAGAACGTGGC
TTTACTTGGGACGCCGGTTGGCGGGACGCGTGCTCGATGGGAGCGCGTGG
CCAGGATAGTGCATGGGAGGGTGATCAACGGGTATTCGGGGTCGGACTTC
ATCCTAGGCATGGTGTTCAGGGCGAGGAGCTTGTCGCTTTCCGTTGCTGG
TGTCCAGAAGGTGAATGCAGCCGGTGTTGAAAACTTGGATCTGTCATCGG
TGGTCGGGTCGAGCCACTTCAACTACAACCGGCGCATGCCTGAGATATTG
GTGAATGCAGCCGGTGTTGAAAACTTGGATCTGTCATCGGTGGTCGGGTC
GAGCCACTTCAACTACAACCGGCGCATGCCTGAGATATTG
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