mRNA_H-paniculata_contig12510.1580.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12510.1580.1
Unique NamemRNA_H-paniculata_contig12510.1580.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12510.1580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12510contigH-paniculata_contig12510:4525..5086 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size562
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12510.1580.1prot_H-paniculata_contig12510.1580.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12510 4537..4935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.8536768-UTR-H-paniculata_contig12510:4524..45361622928971.8536768-UTR-H-paniculata_contig12510:4524..4536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12510 4525..4536 +
1691480687.0796382-UTR-H-paniculata_contig12510:4524..45361691480687.0796382-UTR-H-paniculata_contig12510:4524..4536Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12510 4525..4536 +
1622928971.8874283-UTR-H-paniculata_contig12510:4935..50861622928971.8874283-UTR-H-paniculata_contig12510:4935..5086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12510 4936..5086 +
1691480687.0985098-UTR-H-paniculata_contig12510:4935..50861691480687.0985098-UTR-H-paniculata_contig12510:4935..5086Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12510 4936..5086 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.8718371-CDS-H-paniculata_contig12510:4536..49351622928971.8718371-CDS-H-paniculata_contig12510:4536..4935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12510 4537..4935 +
1691480687.0912914-CDS-H-paniculata_contig12510:4536..49351691480687.0912914-CDS-H-paniculata_contig12510:4536..4935Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12510 4537..4935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12510.1580.1

>prot_H-paniculata_contig12510.1580.1 ID=prot_H-paniculata_contig12510.1580.1|Name=mRNA_H-paniculata_contig12510.1580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MMVDCYFAFMVRVPRRGQDQRSVSSTLILILESSYGRVGGQFPRGQGTLL
RILNRPHVAMRMTTCIKRIKMLCKHYQSHHSVDIAISAARYRSGHVCCST
KAASQKWRKNNANQNHVNCLRLCIPEGAESTS*
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mRNA from alignment at H-paniculata_contig12510:4525..5086+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12510.1580.1 ID=mRNA_H-paniculata_contig12510.1580.1|Name=mRNA_H-paniculata_contig12510.1580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=562bp|location=Sequence derived from alignment at H-paniculata_contig12510:4525..5086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CACAAAGTGACCATGATGGTTGACTGTTATTTTGCTTTCATGGTTCGCGT
GCCCCGACGCGGGCAGGACCAACGCTCAGTCTCTTCAACCCTAATCCTAA
TCCTTGAGTCATCGTACGGCAGGGTAGGGGGTCAATTCCCACGTGGCCAG
GGTACCTTGTTGCGGATATTAAACCGTCCCCACGTTGCGATGAGGATGAC
AACGTGCATAAAACGTATTAAGATGTTGTGTAAACACTACCAATCTCACC
ACAGCGTGGACATTGCAATATCCGCAGCAAGGTACCGCTCTGGTCACGTG
TGTTGTTCAACGAAAGCCGCTTCGCAAAAGTGGCGCAAAAATAACGCGAA
TCAAAACCATGTGAATTGCTTACGTCTGTGCATCCCTGAAGGTGCAGAGT
CCACGAGTTGAAAGGGGATTTGTGTTCAAGGAGGGAACGTACGCATATAT
ATATATATATATGCCCGATCGGGCTTCTTTCAACAAAGCGTCTAAAATAC
ACCCCCCCCCTACCATGGGAATACTCCCTAACCCTAATCCTAATCTTGAC
CCTAACCCCCTA
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Coding sequence (CDS) from alignment at H-paniculata_contig12510:4525..5086+

>mRNA_H-paniculata_contig12510.1580.1 ID=mRNA_H-paniculata_contig12510.1580.1|Name=mRNA_H-paniculata_contig12510.1580.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig12510:4525..5086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGTTGACTGTTATTTTGCTTTCATGGTTCGCGTGCCCCGACGCGG
GCAGGACCAACGCTCAGTCTCTTCAACCCTAATCCTAATCCTTGAGTCAT
CGTACGGCAGGGTAGGGGGTCAATTCCCACGTGGCCAGGGTACCTTGTTG
CGGATATTAAACCGTCCCCACGTTGCGATGAGGATGACAACGTGCATAAA
ACGTATTAAGATGTTGTGTAAACACTACCAATCTCACCACAGCGTGGACA
TTGCAATATCCGCAGCAAGGTACCGCTCTGGTCACGTGTGTTGTTCAACG
AAAGCCGCTTCGCAAAAGTGGCGCAAAAATAACGCGAATCAAAACCATGT
GAATTGCTTACGTCTGTGCATCCCTGAAGGTGCAGAGTCCACGAGTTGAA
TGATGGTTGACTGTTATTTTGCTTTCATGGTTCGCGTGCCCCGACGCGGG
CAGGACCAACGCTCAGTCTCTTCAACCCTAATCCTAATCCTTGAGTCATC
GTACGGCAGGGTAGGGGGTCAATTCCCACGTGGCCAGGGTACCTTGTTGC
GGATATTAAACCGTCCCCACGTTGCGATGAGGATGACAACGTGCATAAAA
CGTATTAAGATGTTGTGTAAACACTACCAATCTCACCACAGCGTGGACAT
TGCAATATCCGCAGCAAGGTACCGCTCTGGTCACGTGTGTTGTTCAACGA
AAGCCGCTTCGCAAAAGTGGCGCAAAAATAACGCGAATCAAAACCATGTG
AATTGCTTACGTCTGTGCATCCCTGAAGGTGCAGAGTCCACGAGTTGA
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