mRNA_H-paniculata_contig1251.1578.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1251.1578.1
Unique NamemRNA_H-paniculata_contig1251.1578.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: D8LNM1_ECTSI (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNM1_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 6.940e-127
Identity = 191/249 (76.71%), Postives = 206/249 (82.73%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPKVLDVAGGTGDIAFRMADQLRPYL--------TSYKERPSE----HDGADGD----DTPFLTVSDINPDMLQVGRQRAADRFSSATLDAMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMFPG 699
            +QVPS  KKGMVK VF+SVAHNYDVMNDLMSAGMHR+WKDEFV+ML IS G+ AGSP PKVLDVAGGTGDIAFR+ADQLRPY+        T   ER  E     DGA  D    + P LTVSDINPDML+VG QRAADRFS   L  M+FVQADAEALPFEDN+FHLYTIAFGLRNVT+ DKALREA RVLKPGGRFMCLEFSRVPI+ LQKAYDWYSFNVIP IG+VVA+DRDAYQYLVESIRMFPG
Sbjct:   55 QQVPSEKKKGMVKSVFTSVAHNYDVMNDLMSAGMHRIWKDEFVDMLRISPGFEAGSPAPKVLDVAGGTGDIAFRVADQLRPYMAGSPAGKGTGEGERGGEGEVRQDGAAADAMDSNVPLLTVSDINPDMLEVGEQRAADRFSPEILTNMQFVQADAEALPFEDNSFHLYTIAFGLRNVTDVDKALREAHRVLKPGGRFMCLEFSRVPIEPLQKAYDWYSFNVIPTIGQVVAKDRDAYQYLVESIRMFPG 303          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: A0A835Z8S3_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S3_9STRA)

HSP 1 Score: 288 bits (738), Expect = 8.490e-95
Identity = 148/232 (63.79%), Postives = 170/232 (73.28%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPKVLDVAGGTGDIAFRMADQLRPYLTSYKERPSEHDGADGDDTPFLTVSDINPDMLQVGRQRAADRFSSATLDAMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMFP 696
            +QVP   KKGMVK VFSSVA +YDVMNDLMSAG+HRLWKDEFV MLG+     AG  PP+VLD+AGGTGDI+FR+ +++ PYL             D  D P +TVSDINP ML+VG +RAA RFS   L A+ F  ADAEALPFED  +  YTIAFGLRNVT+  +AL EA RVL+ GGRFMCLEFS V    LQ+ YD YSF+VIP IG VVA D+ AYQYLVESIRMFP
Sbjct:   50 KQVPESDKKGMVKGVFSSVAKDYDVMNDLMSAGVHRLWKDEFVRMLGVKEALQAGDSPPRVLDMAGGTGDISFRIIEEMSPYLRQ-----------DQGDEPIVTVSDINPKMLEVGEERAAKRFSGRALSALEFRVADAEALPFEDGAYDAYTIAFGLRNVTDVPRALAEARRVLRRGGRFMCLEFSHVNNPMLQRLYDAYSFSVIPKIGAVVANDKPAYQYLVESIRMFP 270          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: A0A0F2R8C3_9PROT (Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE n=1 Tax=Rhodospirillaceae bacterium BRH_c57 TaxID=1629718 RepID=A0A0F2R8C3_9PROT)

HSP 1 Score: 246 bits (629), Expect = 7.320e-79
Identity = 134/232 (57.76%), Postives = 159/232 (68.53%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPKVLDVAGGTGDIAFRMADQLRPYLTSYKERPSEHDGADGDDTPFLTVSDINPDMLQVGRQRAADRFSSATLDAMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMFP 696
            R V +  KKGMV++VF SVA  YD+MNDLMSAG+HR+WK  F+E       W A  P  ++LDVAGGTGDIAFR  D                 GAD +    +TV DIN +ML+VGR RA D+     L  + +V+ DAEALPFEDN+F  YTIAFGLRNVT+ D+ALREA RVLKPGGRFMCLEFS V +  L   YD YSF V+P +G+VVAR+RDAYQYLVESIR FP
Sbjct:   21 RTVRAADKKGMVREVFDSVAERYDLMNDLMSAGVHRVWKARFIE-------WLAPRPGMRLLDVAGGTGDIAFRFLDAAGKR------------GADPE--THVTVCDINEEMLKVGRNRAVDK---GILGGIEWVRGDAEALPFEDNSFDAYTIAFGLRNVTDIDQALREARRVLKPGGRFMCLEFSHVVVPGLDAVYDVYSFQVLPRLGQVVARNRDAYQYLVESIRRFP 228          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: A0A5A8EG61_CAFRO (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8EG61_CAFRO)

HSP 1 Score: 245 bits (626), Expect = 5.960e-78
Identity = 137/235 (58.30%), Postives = 158/235 (67.23%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPKVLDVAGGTGDIAFRMADQLRPYLTSYKERPSEHDGADGDDTPFLTVSDINPDMLQVGRQRAADR--FSSATLDAMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMFPG 699
            R+VP   KK MV  VF SVA  YD+MND MS  +HRLWKDEFV MLG        S P + LD+AGGTGDI+FR+A+ LR    S   +P   +         + VSDINP ML VG QRA  +       L AM FV+ADAEALPFE +TF  YTIAFG+RNVT+ D+AL EA RVL+PGGRFMCLEFSRV    L  AYD YSFNVIPA+G+ V  DRD+YQYLVESIR FP 
Sbjct:   39 REVPEDDKKAMVGGVFHSVADRYDLMNDFMSGTLHRLWKDEFVSMLGPVESPDP-SDPVRYLDMAGGTGDISFRIAEALR----SRSGKPVAAE---------IVVSDINPSMLGVGEQRARSKGLLDGRGLPAMSFVEADAEALPFESDTFDSYTIAFGIRNVTHVDRALAEAFRVLRPGGRFMCLEFSRVRNPVLAAAYDAYSFNVIPAVGQAVTGDRDSYQYLVESIRQFPN 259          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: A0A6H5K315_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K315_9PHAE)

HSP 1 Score: 243 bits (620), Expect = 1.270e-77
Identity = 132/202 (65.35%), Postives = 149/202 (73.76%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPKVLDVAGGTGDIAFRMADQLRPYLTSY----------KERPSEHDGADGD----DTPFLTVSDINPDMLQVGRQRAADRFSSATLDAMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFS 564
            +QVPS  KKGMVK VF+SVAHNYDVMNDLMSAGMHR+WKDEFV+ML IS G+ AGSP PKVLDVAGGTGDIAFR+ADQLRPY+             ++   + DGA G+    + P LTVSDINPDML+VG QRAADRFS   L  M+FVQADAEALPFEDN+FHLYTIAFGLRNVT+          V + GGR   L FS
Sbjct:   55 QQVPSEQKKGMVKGVFTSVAHNYDVMNDLMSAGMHRIWKDEFVDMLRISPGFEAGSPAPKVLDVAGGTGDIAFRVADQLRPYMAGSPAGDATGEGEEQGGVQQDGAAGNAIDSNVPLLTVSDINPDMLEVGEQRAADRFSPEILTNMQFVQADAEALPFEDNSFHLYTIAFGLRNVTD----------VREEGGRTKALVFS 246          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: W4GFN2_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GFN2_9STRA)

HSP 1 Score: 241 bits (614), Expect = 3.230e-76
Identity = 133/234 (56.84%), Postives = 159/234 (67.95%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPKVLDVAGGTGDIAFRMADQLRPYLTSYKERPSEHDGADGDDTPFLTVSDINPDMLQVGRQRAADRFSS--ATLDAMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMFP 696
            +QV  + KK MV  VF SVA +YDVMND MS GMHRLWKDEFV MLG          P ++LDVAGGTGDIAFRMAD+L+        R    D    DD   + V DIN  ML+VG +RA  R      T  +  +V+ DAE L FEDN+F +YTIAFG+RNVT+ DKAL EA RVL+ GGRFMCLEFS+V    L+  YD YSFN+IPA+GE++A+DR +YQYLVESIR FP
Sbjct:   32 QQVDEHDKKPMVAGVFHSVADSYDVMNDAMSGGMHRLWKDEFVNMLGPLP--HRNGEPLRILDVAGGTGDIAFRMADRLK--------RAGLPDSPTDDDRTDIVVCDINGSMLRVGEERATARGIGLPGTRPSFAWVEGDAEQLKFEDNSFDVYTIAFGIRNVTHVDKALAEAHRVLRKGGRFMCLEFSQVQNPLLRTIYDTYSFNMIPAMGELLAKDRASYQYLVESIRQFP 255          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: A0A7R9UVH4_DIALT (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UVH4_DIALT)

HSP 1 Score: 238 bits (608), Expect = 3.790e-75
Identity = 128/235 (54.47%), Postives = 162/235 (68.94%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPKVLDVAGGTGDIAFRMADQLRPYLTSYKERPSEHDGADGDDTPFLTVSDINPDMLQVGRQRAADR--FSSATLDAMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMFPG 699
            R VP   K  MV +VFS VA +YD+MND+MSAG+HR+WKD FV+ +G+    +A S   +VLDVAGGTGDI FR+AD L     S + R              +TV DIN DML+VG QRA  R         A+R+VQ DAE LPF+D++F +Y+IAFG+RNVT+  KALREA RVL+PGGRF+CLEFS+V  + L+  YD YSF +IPA+G +VA DR++YQYLVESIR FP 
Sbjct:   46 RDVPQADKAKMVGEVFSRVADSYDLMNDVMSAGVHRVWKDHFVDGMGLPAINAASSTGVRVLDVAGGTGDITFRIADALAADGPSARARAE------------VTVFDINADMLRVGEQRAGARAQLQRPGAPALRWVQGDAETLPFDDSSFDVYSIAFGIRNVTDVPKALREARRVLRPGGRFVCLEFSQVQPRILRALYDEYSFRMIPALGALVANDRESYQYLVESIRKFPA 268          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: A0A2D4BYL6_PYTIN (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYL6_PYTIN)

HSP 1 Score: 237 bits (604), Expect = 9.010e-75
Identity = 134/234 (57.26%), Postives = 154/234 (65.81%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPKVLDVAGGTGDIAFRMADQLRPYLTSYKERPSEHDGADGDDTPFLTVSDINPDMLQVGRQRAADRFSSATLDAM-RFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMFPG 699
            +QV    KK MV  VF  VA  YDVMND MS GMHR+WKD F++ L        G  P  VLDVAGGTGDIAFRM  +LR                  D    +T+ DIN  MLQVGR+RAA  F  A  DA+ R+ Q DAE L F DN+F +YTIAFG+RNVT+ D+ALREA RVL+PGGRF+CLEFS VP   L+  YD YSFNVIPA+GE VA DRD+YQYLVESIR FP 
Sbjct:   45 QQVKEEDKKPMVASVFHRVAERYDVMNDFMSGGMHRVWKDAFIDTL-----HPVG--PLDVLDVAGGTGDIAFRMGRRLR------------------DSGSTITICDINSSMLQVGRERAARMFPDA--DALFRWEQGDAEQLQFADNSFDVYTIAFGIRNVTHVDRALREAYRVLRPGGRFLCLEFSHVPNPLLRAVYDAYSFNVIPALGEKVASDRDSYQYLVESIRQFPA 251          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: A0A7S4I811_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I811_9STRA)

HSP 1 Score: 239 bits (609), Expect = 9.300e-75
Identity = 134/247 (54.25%), Postives = 164/247 (66.40%), Query Frame = 1
Query:   22 KKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSA--------------GSPPPKVLDVAGGTGDIAFRMADQLRPYLTSYKERPSEHDGADGDDTPFLTVSDINPDMLQVGRQRAADRFS-SATLD--------AMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMF 693
            K+  V++VF SVA +YDVMNDLMSAG+HRLWKDE + M G++    A                P   +LDVAGGTGD+AFR  +          ER      + G D   +TV DIN +ML+VG +RA DR+  SA LD        A+RFVQ +A+ LPF+D +F +YTIAFGLRNVT+ D ALR+ALRVLKPGGRF+CLEFS+VP   L   YD YSFNVIPAIGEVV +DR++YQYLVESIR F
Sbjct:   69 KESKVREVFESVADSYDVMNDLMSAGLHRLWKDELIAMTGVAGMAKAVRRRTVASSLVGDNQKPQLSILDVAGGTGDVAFRFYE-----TAGCPERAL----SSGSDEISVTVCDINSEMLKVGERRARDRYGDSALLDGDGTHSAGALRFVQGNAQCLPFDDESFDIYTIAFGLRNVTDVDMALRDALRVLKPGGRFLCLEFSKVPNPVLSTLYDSYSFNVIPAIGEVVTQDRESYQYLVESIRKF 306          
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Match: A0A7S3M517_9STRA (2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M517_9STRA)

HSP 1 Score: 237 bits (604), Expect = 2.350e-74
Identity = 125/234 (53.42%), Postives = 159/234 (67.95%), Query Frame = 1
Query:    1 RQVPSYAKKGMVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAG-SPPPKVLDVAGGTGDIAFRMADQ-LRPYLTSYKERPSEHDGADGDDTPFLTVSDINPDMLQVGRQRAADRFSSATLDAMRFVQADAEALPFEDNTFHLYTIAFGLRNVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAIGEVVARDRDAYQYLVESIRMFP 696
            + V +  K+ MVKD+FS VA  YDVMND+MS G HRLWKDE + M+GI+    A  S  P+ LDVAGGTGD+AFR  +Q L  Y  S +  P      +      + V DINPDML+VG+QRA   +    L+ + FV+ +AE LPF D +F LYTI FGLRNVTN DKA+REA RVLK GGR M +EFS V    + +AYD +SF+ IPA+G+++A DR++YQYLVESIR FP
Sbjct:   52 KDVDADEKERMVKDIFSKVADKYDVMNDVMSFGTHRLWKDELISMMGINAAARANPSYVPRHLDVAGGTGDVAFRSLNQILSSYGNSARSLPVSEQATEKQ----VVVCDINPDMLRVGKQRAEKLYKGDELNLIGFVEGNAEQLPFPDESFDLYTIVFGLRNVTNKDKAIREAYRVLKKGGRMMVMEFSHVTNPLMAQAYDQFSFHAIPAMGKIIANDRESYQYLVESIRRFP 281          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1251.1578.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNM1_ECTSI6.940e-12776.712-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A835Z8S3_9STRA8.490e-9563.792-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A0F2R8C3_9PROT7.320e-7957.76Ubiquinone/menaquinone biosynthesis C-methyltransf... [more]
A0A5A8EG61_CAFRO5.960e-7858.302-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A6H5K315_9PHAE1.270e-7765.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4GFN2_9STRA3.230e-7656.842-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A7R9UVH4_DIALT3.790e-7554.472-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A2D4BYL6_PYTIN9.010e-7557.262-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A7S4I811_9STRA9.300e-7554.252-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]
A0A7S3M517_9STRA2.350e-7453.422-methoxy-6-polyprenyl-1,4-benzoquinol methylase, ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1251contigH-paniculata_contig1251:18005..21488 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score359.0
Seed ortholog evalue1.6e-96
Seed eggNOG ortholog2880.D8LNM1
Preferred nameCOQ5
KEGG rclassRC00003,RC01253
KEGG koko:K06127
KEGG ReactionR04983,R08774
KEGG Pathwayko00130,ko01100,ko01110,map00130,map01100,map01110
KEGG ModuleM00128
Hectar predicted targeting categoryother localisation
EggNOG free text desc.2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity
EggNOG OGsCOG2226@1,KOG1540@2759
Ec32 ortholog descriptionUbiE/COQ5 methyltransferase
Ec32 orthologEc-08_006620.1
EC2.1.1.201
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons8
Model size702
Cds size672
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.6369746-CDS-H-paniculata_contig1251:18004..180701622928971.6369746-CDS-H-paniculata_contig1251:18004..18070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 18005..18070 -
1691480686.972734-CDS-H-paniculata_contig1251:18004..180701691480686.972734-CDS-H-paniculata_contig1251:18004..18070Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 18005..18070 -
1622928971.6529596-CDS-H-paniculata_contig1251:18531..186251622928971.6529596-CDS-H-paniculata_contig1251:18531..18625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 18532..18625 -
1691480686.9919856-CDS-H-paniculata_contig1251:18531..186251691480686.9919856-CDS-H-paniculata_contig1251:18531..18625Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 18532..18625 -
1622928971.673167-CDS-H-paniculata_contig1251:19063..191131622928971.673167-CDS-H-paniculata_contig1251:19063..19113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 19064..19113 -
1691480687.0073342-CDS-H-paniculata_contig1251:19063..191131691480687.0073342-CDS-H-paniculata_contig1251:19063..19113Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 19064..19113 -
1622928971.7022235-CDS-H-paniculata_contig1251:19473..195541622928971.7022235-CDS-H-paniculata_contig1251:19473..19554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 19474..19554 -
1691480687.01947-CDS-H-paniculata_contig1251:19473..195541691480687.01947-CDS-H-paniculata_contig1251:19473..19554Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 19474..19554 -
1622928971.7308488-CDS-H-paniculata_contig1251:20220..202861622928971.7308488-CDS-H-paniculata_contig1251:20220..20286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 20221..20286 -
1691480687.03209-CDS-H-paniculata_contig1251:20220..202861691480687.03209-CDS-H-paniculata_contig1251:20220..20286Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 20221..20286 -
1622928971.7450686-CDS-H-paniculata_contig1251:20577..207011622928971.7450686-CDS-H-paniculata_contig1251:20577..20701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 20578..20701 -
1691480687.0392334-CDS-H-paniculata_contig1251:20577..207011691480687.0392334-CDS-H-paniculata_contig1251:20577..20701Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 20578..20701 -
1622928971.7616322-CDS-H-paniculata_contig1251:20985..211091622928971.7616322-CDS-H-paniculata_contig1251:20985..21109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 20986..21109 -
1691480687.046843-CDS-H-paniculata_contig1251:20985..211091691480687.046843-CDS-H-paniculata_contig1251:20985..21109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 20986..21109 -
1622928971.7800968-CDS-H-paniculata_contig1251:21391..214581622928971.7800968-CDS-H-paniculata_contig1251:21391..21458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 21392..21458 -
1691480687.0577033-CDS-H-paniculata_contig1251:21391..214581691480687.0577033-CDS-H-paniculata_contig1251:21391..21458Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1251 21392..21458 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.8007329-UTR-H-paniculata_contig1251:21458..214881622928971.8007329-UTR-H-paniculata_contig1251:21458..21488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1251 21459..21488 -
1691480687.0698957-UTR-H-paniculata_contig1251:21458..214881691480687.0698957-UTR-H-paniculata_contig1251:21458..21488Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1251 21459..21488 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1251.1578.1prot_H-paniculata_contig1251.1578.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1251 18005..21458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1251.1578.1

>prot_H-paniculata_contig1251.1578.1 ID=prot_H-paniculata_contig1251.1578.1|Name=mRNA_H-paniculata_contig1251.1578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MVKDVFSSVAHNYDVMNDLMSAGMHRLWKDEFVEMLGISTGWSAGSPPPK
VLDVAGGTGDIAFRMADQLRPYLTSYKERPSEHDGADGDDTPFLTVSDIN
PDMLQVGRQRAADRFSSATLDAMRFVQADAEALPFEDNTFHLYTIAFGLR
NVTNTDKALREALRVLKPGGRFMCLEFSRVPIQSLQKAYDWYSFNVIPAI
GEVVARDRDAYQYLVESIRMFPG*
back to top

mRNA from alignment at H-paniculata_contig1251:18005..21488-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1251.1578.1 ID=mRNA_H-paniculata_contig1251.1578.1|Name=mRNA_H-paniculata_contig1251.1578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3484bp|location=Sequence derived from alignment at H-paniculata_contig1251:18005..21488- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGGCAGGTCCCCTCGTACGCAAAAAAGGGCATGGTGAAGGACGTGTTCAG CAGCGTGGCGCACAACTATGACGTAATGAATGATCTCATGAGTGCAGGTA AGCTGCTTCTCTCTCTACATGAACTTTGCTCGTTAGCGATAGAAGATATT GAATATTACAAAGATATCGGTCAGGCAGGGCAATCCCATGGGAATGTCGA CATTTTCGTCCCGAATACAACACAGTTTCTTTCGTACAGTATCACAAGGA AGGTGCCCGCCTCGTCTGCATGAGATTCGTAGATGGCCAGATAGATGACT GCCTACGCTACCTGGCGCGTCTTGCTCTGGGCTAGGTTTAAATGAGTCCT ATTGTCGTTCTCGCGTCGCTTTCTTTCAGGTATGCACCGGCTTTGGAAGG ACGAGTTTGTGGAAATGCTGGGAATTTCTACTGGGTGGAGCGCAGGGTCT CCCCCTCCCAAGGTGTTGGATGTGGCAGGCGGTACAGGAGACATCGCCTT CAGGTGATCGATTGATGGATTGCTTAACCTTGCTATTCATTATTCATGCA CTTTGAGCTCTGCCACGGAACCCCAACTCCATTGTGTGTGTTTCCAGGTA GTACCTATTAGCACCAAATCGGTATTCTACGATAGCTGTCCGTAGATATG TTGTAGCGAAACCCGTTTTTTTATGAGGTCTTAGTTGCGCGTGTGAACCT TGGCTAACCGCTTCTTTCCCCATTAGTATTTTTGGTGGTAGTCCTGCTGA TTTCTCTCTATCGCTTGTTCGTCTCGTGTTGGGATAGGATGGCCGACCAG CTTAGGCCTTATCTGACCAGCTACAAAGAAAGGCCTAGCGAGCACGACGG CGCTGATGGAGATGACACCCCGTTTCTCACAGTCAGCGACATCAACCCGG ATATGCTCCAGGTGCTTCAGAGAGCAAGAAGTCGTGTTATCTTGAGCGTA AACCCAACTATTTGCCGTTGGGAGCAGCGGGGCTGCAGCCCGTTTTGGGA TGGTAAATGCTGCCGTCAGGTCTTGTACAACCTCTGCTGTAGCCATTTTC CCCGTGGTACGTAACCCCCCCTTCCCCTCTCGCCGAAGCGTGTCCAATTT TGTGCTTATGTTGTGCTCATTGCAAATTGTGTCTATACTTCTTACAGATT GCGCATGTCTGACTTTATTGCTTCTGACGCTGGTTTATGTCCCTGTGTAC AGGTCGGGCGGCAGCGGGCTGCCGATAGGTTTTCGTCGGCGACGCTCGAT GCAATGCGATTCGTACAGGTAAATGACCTTCGTCGATGCCATCGTGATGT GGGACACATGGTGTCGCAGGATTTGGTTGTCGTGGGGTTCCTGCGTAGCA TTTCCTGGTGAAATGCGCTAGGGTTGCAGAGCCCTCCTGGCACCTCGCTT ACCCCAGGATTAGTGGTGTTAGGTGCAGATTGTACTATGTATTATGCCAG CGTTACTCTCCTCTCTTCTCGGGGATGGAACCGTCCGTGGTTGAGAAGGC AGAAGTATTTATTTCGAGGTGTTTCAGGCGAGGCTTGATTCGACCAGAAA CGACATCCGTCGATAGATGTTATGCGCTGCAGTTATCGTGGGTAGAGACA TTCCAAATGTAAGTGTGTGCTGTCTGTACCGGACCGTCTTGTCTGAACAG CGGTGGCTCCCTCTCGTCGTACTTGGTAGGGATTAGACGAATCAGTGCTA AAGGTTCAACCATGTAAAGTAATGATCGTCCAGTTACCTTGTAGGCGGTA TGGTTCACTTTGCTGAGCGTCACAATCGAAGTGTAGGTACCGCCTCTTTC CCTGCGTGTTGCAACTGCACGCTCATATTCGTTTCAGTATTAACACCACG CGCATTGTCGGATCCTATCCCATTGTCTGTTCGTTTGTGCGCTGGTGCCA TGTCTACCATGATTATGTTGCGTTGTTCATGAAGGCTGATGCAGAAGCTT TGCCGTTCGAAGATAACACTTTTCACCTATACACGATAGCGTTCGGTCTG CGCAACGTGACAAATGTGAGTGGTAGCTTCGCTGCTAGCGTCGTTATTCA TAGCACTAGCGGCGAAAGGAGGCCGTTCTCGTGTTTTCTTCATGTGTCAT CCTTCCATGTTGCCTAGGCCTTTTACGTGGAGGGATGTAGCATGCGACAT ACGTGTGATGCACTGCTCGTCTAAGGTGTGAACCGCAGTCAGATATTACT GCATGATGCATGTGAATCTAAGTTGTGAGATAGCACAGACCACAGACGGC GTAACATTGACATTTACGATGGACTACGTCGGGACATATTCTGTGAATGC TTATTGAAGAAAAAATAGGGCGTAGTACCCCGTGCTGTCTAATCTGGTTC GTTTTTTTCTGTTACCTCGCTTTAGACCGACAAGGCTCTTCGAGAGGCTT TGCGCGTACTCAAGCCTGGCGGGAGGTGAGCAGACATTGGCAAAGCTGCG CGAATTTTCTGCTTTTACCCCTCTCCTTCGCTAGTGGTTCGTGTGAAAAA CGCAAATTGGCTGGTAAGATGGGCAAGGAATGCATTGTTTCGGGGTTGCG AACCCAGAGTTTTCGGTGACTTCATGGAGGCCTCCAGCTTGCGCCATCGC AAATCACGCTGCTTTCTGTCACAAACAAGATGGTGGGCTACATTTCATTT TGCGTATCACTGTACATCTCTTCACTGTACTTCTCGCCTGCTGAAGTCGT GTTCTCTCTGTTTTGGTTCGTCTTGCTCGTCACCTTGCGTTTCTTTCCTT GGAGAGTCTTTTTTGTTTGTTTGTTTATCGTGCTAAGCAAATTGCACGTG CTCGGCAATGGCAAACACTGACGTTGATTTTGTATTTCGCTCACGACACG TTGCTCTGTGCAGGTTCATGTGCCTAGAGTTTAGCCGTGTGCCAATACAA TCCCTCCAGAAGGCCTACGACTGGTACAGCTTTAACGTAATTCCAGCCAT TGGCGAGGTGTGTGCTGCGTATGCCTTGTACACTCTTTCCCTTTTTTTGA TTACCAGAGACAAGACACGAAAGGCGACTGTATTGTATAATATTACCATT TAGGAATGCAACAACAAAAAGCATCAAGGTACAACAGGTCTGCGGCTCTC CAGCACTAGGTATATAACAGTGTCCGTAGTAGGCATTTCTGGAACCAATC GATATCATGCGTCAAATCATGGAATTATTTTCCCATCTAGTGAATACTAT GATCCTCTGAACCCACCCATCTATCTCTTCCACATCAAAAGCTTGTTTTA GTCCCACCAGCAGAAGAACAACCGATGCATTGGACATATATAGTCACTAT TTCAACCTCAACCCAGGTGTTGGTGCCTGCTATCGTACAGTGGCAGAATC CGCCTCATTAGCCACGTTCCTGACACTGTTATTTCGTCTAACTGGCACAC CCTATTGATGCCTGACAGGTTGTGGCCAGGGATCGAGATGCCTATCAATA CCTGGTGGAAAGCATTCGGATGTTTCCTGGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1251:18005..21488-

>mRNA_H-paniculata_contig1251.1578.1 ID=mRNA_H-paniculata_contig1251.1578.1|Name=mRNA_H-paniculata_contig1251.1578.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig1251:18005..21488- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGGACGTGTTCAGCAGCGTGGCGCACAACTATGACGTAATGAA
TGATCTCATGAGTGCAGATGGTGAAGGACGTGTTCAGCAGCGTGGCGCAC
AACTATGACGTAATGAATGATCTCATGAGTGCAGGTATGCACCGGCTTTG
GAAGGACGAGTTTGTGGAAATGCTGGGAATTTCTACTGGGTGGAGCGCAG
GGTCTCCCCCTCCCAAGGTGTTGGATGTGGCAGGCGGTACAGGAGACATC
GCCTTCAGGTATGCACCGGCTTTGGAAGGACGAGTTTGTGGAAATGCTGG
GAATTTCTACTGGGTGGAGCGCAGGGTCTCCCCCTCCCAAGGTGTTGGAT
GTGGCAGGCGGTACAGGAGACATCGCCTTCAGGATGGCCGACCAGCTTAG
GCCTTATCTGACCAGCTACAAAGAAAGGCCTAGCGAGCACGACGGCGCTG
ATGGAGATGACACCCCGTTTCTCACAGTCAGCGACATCAACCCGGATATG
CTCCAGGATGGCCGACCAGCTTAGGCCTTATCTGACCAGCTACAAAGAAA
GGCCTAGCGAGCACGACGGCGCTGATGGAGATGACACCCCGTTTCTCACA
GTCAGCGACATCAACCCGGATATGCTCCAGGTCGGGCGGCAGCGGGCTGC
CGATAGGTTTTCGTCGGCGACGCTCGATGCAATGCGATTCGTACAGGTCG
GGCGGCAGCGGGCTGCCGATAGGTTTTCGTCGGCGACGCTCGATGCAATG
CGATTCGTACAGGCTGATGCAGAAGCTTTGCCGTTCGAAGATAACACTTT
TCACCTATACACGATAGCGTTCGGTCTGCGCAACGTGACAAATGCTGATG
CAGAAGCTTTGCCGTTCGAAGATAACACTTTTCACCTATACACGATAGCG
TTCGGTCTGCGCAACGTGACAAATACCGACAAGGCTCTTCGAGAGGCTTT
GCGCGTACTCAAGCCTGGCGGGAGACCGACAAGGCTCTTCGAGAGGCTTT
GCGCGTACTCAAGCCTGGCGGGAGGTTCATGTGCCTAGAGTTTAGCCGTG
TGCCAATACAATCCCTCCAGAAGGCCTACGACTGGTACAGCTTTAACGTA
ATTCCAGCCATTGGCGAGGTTCATGTGCCTAGAGTTTAGCCGTGTGCCAA
TACAATCCCTCCAGAAGGCCTACGACTGGTACAGCTTTAACGTAATTCCA
GCCATTGGCGAGGTTGTGGCCAGGGATCGAGATGCCTATCAATACCTGGT
GGAAAGCATTCGGATGTTTCCTGGGTGAGTTGTGGCCAGGGATCGAGATG
CCTATCAATACCTGGTGGAAAGCATTCGGATGTTTCCTGGGTGA
back to top