mRNA_H-paniculata_contig12506.1573.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12506.1573.1
Unique NamemRNA_H-paniculata_contig12506.1573.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: D7G3E4_ECTSI (PDZ domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3E4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.280e-24
Identity = 69/131 (52.67%), Postives = 82/131 (62.60%), Query Frame = 2 
Query:  512 QIVTELRMRGRVDRPQLGMRLVAADPGHERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGREVGRRIEIVV-------RRDGQPGSRG---------LTVVTESDLISGKPPSVPG 856
            Q++ +LR +GRVDRPQLGMRLV  D    +  GVM+LSVTPGGAAD AGLRFGDLITEFDGK+V  T++VLQ IG +VGR I + V          G P             +TVVTESDL    P +  G
Sbjct:  350 QVIEDLRTQGRVDRPQLGMRLVTTDNQKGKSSGVMILSVTPGGAADRAGLRFGDLITEFDGKAVTTTTEVLQLIGHQVGRAIPMTVVAAIPPVADPGHPPEXXXXXXXXXXXVTVVTESDLPRSPPAAANG 480
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: A0A7C1TIF1_9GAMM (Periplasmic serine endoprotease DegP-like n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C1TIF1_9GAMM)

HSP 1 Score: 71.2 bits (173), Expect = 2.200e-9
Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 2 
Query:  515 IVTELRMRGRVDRPQLGM------RLVAADPGHERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGRE-VGRRIEIVVRRDGQPGSRGLTVVTESDLISGKPPSVP-GKRSSE 871
            ++ +L+  G+V+R  LG+      R +A   G ++  G +VL V PG  A+AAGL+ GD++ EF+G+ V ++SD+   +GR  VG++++I V R G+  +  + +   +D ++G P   P GK   E
Sbjct:  254 VIRQLKTTGKVERGMLGILIQDVDRELAESFGMDQPHGAVVLRVLPGSPAEAAGLKVGDVVVEFNGQRVGRSSDLPLLVGRTPVGKKVKIKVIRGGKKRTLRVKIGALTDELAGTPSQSPHGKGGGE 380
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: A0A0J8CL41_BETVV (PDZ domain-containing protein n=3 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=A0A0J8CL41_BETVV)

HSP 1 Score: 69.7 bits (169), Expect = 5.740e-9
Identity = 38/100 (38.00%), Postives = 60/100 (60.00%), Query Frame = 2 
Query:  512 QIVTELRMRGRVDRPQLGMRLV-----------AADPGHER-GRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGREVGRRIEIVVRR 775
            +I+ + + RGRV RP LG++++             DP      RGV+V  VTPG  AD AG + GD++TEFDGKSV    +++  +  +VG+ +++VV+R
Sbjct:  306 KIIDQFKKRGRVVRPWLGLKMIDLNGMIISQLKERDPAFPIVDRGVLVPMVTPGSPADRAGFQPGDVVTEFDGKSVGSIKEIIDLMDEKVGKPLKVVVKR 405
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: A0A068VG32_COFCA (PDZ domain-containing protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068VG32_COFCA)

HSP 1 Score: 69.3 bits (168), Expect = 9.740e-9
Identity = 42/116 (36.21%), Postives = 67/116 (57.76%), Query Frame = 2 
Query:  512 QIVTELRMRGRVDRPQLGMRLV--------------AADPGHERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGREVGRRIEIVVRRDGQPGSRGLTVVTE 817
            +I+   + +GRV RP LG++++              AA P   RG  ++V  VTPG  AD AG   GD++ EFDGKSV    ++++ +G +VG+ +E+VV+R  +  +  LTV+ E
Sbjct:  386 KIIEHFKTKGRVVRPWLGLKMIDLNEMIVAQLKEKDAALPNVTRG--ILVPMVTPGSPADRAGFLPGDIVVEFDGKSVTMIKEIIEIMGDKVGKPLEVVVKR-AKDKTVTLTVIPE 498
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: A0A1F8XUW6_9DELT (Periplasmic serine endoprotease DegP-like n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F8XUW6_9DELT)

HSP 1 Score: 69.3 bits (168), Expect = 9.780e-9
Identity = 41/111 (36.94%), Postives = 68/111 (61.26%), Query Frame = 2 
Query:  512 QIVTELRMRGRVDRPQLGMRL------VAADPGHERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGR-EVGRRIEIVVRRDGQPGSRGLTVVTESD 823
            +++ +L+  G+V R  +G+ +      +AA  G +  +GV++ SVTPG  AD AGLR GD+I  FDGKS+A+ SD+ + +   + G+ +E+ V RDG   +  + V T+ D
Sbjct:  284 EVILQLKEFGKVTRGWIGVSIQELTPELAASFGLKDSKGVLISSVTPGDPADKAGLRAGDIIIAFDGKSIAEISDLPRTVASTQPGKNVEVRVVRDGAEKTYFVRVGTKMD 394
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: A0A2T7TZA8_9HYPH (Periplasmic serine endoprotease DegP-like n=2 Tax=Microvirga TaxID=186650 RepID=A0A2T7TZA8_9HYPH)

HSP 1 Score: 68.9 bits (167), Expect = 1.200e-8
Identity = 40/121 (33.06%), Postives = 65/121 (53.72%), Query Frame = 2 
Query:  515 IVTELRMRGRVDRPQLGMRLVAADP------GHERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGR-EVGRRIEIVVRRDGQPGSRGLTVVTESDLISGKPPSVPG 856
            +  +L   GRV+R  +G+RL    P      GH   +GV+V +V PGG A+ AG R GD+IT+FD K V    D+ + +   + G ++ + V RDG+P    + +   SD ++ +  +  G
Sbjct:  257 VADQLIRTGRVERGYVGLRLQEITPAIAQALGHPDSKGVLVATVEPGGPAEKAGFRSGDVITQFDRKPVESGRDLSRAVAAIKPGSQVPVTVVRDGKPQELTIVIGQRSDELAARSAAPDG 377
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: A0A7Y8HG78_9DELT (Periplasmic serine endoprotease DegP-like n=1 Tax=Syntrophaceae bacterium TaxID=2052184 RepID=A0A7Y8HG78_9DELT)

HSP 1 Score: 68.9 bits (167), Expect = 1.300e-8
Identity = 37/99 (37.37%), Postives = 63/99 (63.64%), Query Frame = 2 
Query:  512 QIVTELRMRGRVDRPQLGMRLVAADP------GHERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGRE-VGRRIEIVVRRDGQP 787
            +I+ +L+ RG+V R  +G+ +    P      G E+G G +V  V  GGAA+AAG+R GD+IT+FDGK + + +++ + +    VG+ +E+ V R+G+P
Sbjct:  292 EIIPQLKKRGKVTRGGIGVYVQKMTPELAKSFGLEKGEGALVADVIAGGAAEAAGIRRGDVITKFDGKEIHEMNELPRMVAATPVGKDVEVEVLREGKP 390
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: UPI001D0A2969 (Do family serine endopeptidase n=1 Tax=Microvirga rosea TaxID=2715425 RepID=UPI001D0A2969)

HSP 1 Score: 68.6 bits (166), Expect = 1.590e-8
Identity = 42/124 (33.87%), Postives = 65/124 (52.42%), Query Frame = 2 
Query:  515 IVTELRMRGRVDRPQLGMRLVAADP------GHERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGR-EVGRRIEIVVRRDGQPGSRGLTVVTESDLISGK-PPSVPGKR 862
            I  +L   GRV+R  +G+RL    P      G    +GV++ SV PGG A+ AG+R GD++  F+G  V    D+ + I   + G ++ + V RDG+     LT+    D  +G+  P  PG+R
Sbjct:  261 IAEQLIRAGRVERGHIGVRLQELTPAIAQALGRPDEKGVLIASVDPGGPAEKAGIRLGDVVIGFNGNPVESGRDLSRAIAAAKPGTQVSVAVHRDGRSQDLSLTIGPRPDASAGQGSPEPPGRR 384
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: A0A067C5U3_SAPPC (PDZ domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C5U3_SAPPC)

HSP 1 Score: 67.4 bits (163), Expect = 2.790e-8
Identity = 42/110 (38.18%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:  515 IVTELRMRGRVDRPQLGMRLVAADPG---------HERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGREVGRRIEIVVRRDGQPGSRGLTVVTE 817
            ++T+LR +  V RP +GM++V   PG          +   GV+V SVTPG  A   GL+ GD+I EF G  V    DV   +G  VG+++ + VRRDG    R    VT+
Sbjct:  274 VITQLRKQKIVTRPYVGMQMVQFSPGVLPEISKLYSDLKSGVVVKSVTPGSPAAIGGLQPGDVIVEFAGTRVETIKDVTTALGYNVGQKMCMKVRRDGNTEPRIFCFVTQ 383
[Close]
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Match: A0A2I0KZY8_PUNGR (PDZ domain-containing protein n=2 Tax=Punica granatum TaxID=22663 RepID=A0A2I0KZY8_PUNGR)

HSP 1 Score: 66.2 bits (160), Expect = 5.280e-8
Identity = 42/110 (38.18%), Postives = 63/110 (57.27%), Query Frame = 2 
Query:  485 VGVAC-LPLPQIVTELRMRGRVDRPQLGMRLV-----------AADPGHER-GRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQCIGREVGRRIEIVVRR 775
            + V C L L   VT   +R RV RP LG+++V             DP     G+GV+V++VTPG  AD AG+  GD++ EFDGK V   S++++ +G  +G  + +VV+R
Sbjct:  227 LSVGCPLSLQNTVTAGIVRWRVVRPWLGLKMVDLNEMVIAQLKERDPTFPNVGKGVLVVTVTPGSPADRAGILPGDVVVEFDGKPVESISEIIEIMGDHIGVPMMVVVKR 336
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12506.1573.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E4_ECTSI1.280e-2452.67PDZ domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7C1TIF1_9GAMM2.200e-933.86Periplasmic serine endoprotease DegP-like n=1 Tax=... [more]
A0A0J8CL41_BETVV5.740e-938.00PDZ domain-containing protein n=3 Tax=Beta vulgari... [more]
A0A068VG32_COFCA9.740e-936.21PDZ domain-containing protein n=3 Tax=Coffea TaxID... [more]
A0A1F8XUW6_9DELT9.780e-936.94Periplasmic serine endoprotease DegP-like n=2 Tax=... [more]
A0A2T7TZA8_9HYPH1.200e-833.06Periplasmic serine endoprotease DegP-like n=2 Tax=... [more]
A0A7Y8HG78_9DELT1.300e-837.37Periplasmic serine endoprotease DegP-like n=1 Tax=... [more]
UPI001D0A29691.590e-833.87Do family serine endopeptidase n=1 Tax=Microvirga ... [more]
A0A067C5U3_SAPPC2.790e-838.18PDZ domain-containing protein n=2 Tax=Saprolegnia ... [more]
A0A2I0KZY8_PUNGR5.280e-838.18PDZ domain-containing protein n=2 Tax=Punica grana... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12506contigH-paniculata_contig12506:838..4680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.0
Seed ortholog evalue1.9e-24
Seed eggNOG ortholog2880.D7G3E4
Preferred nameHTRA2
KEGG koko:K08669,ko:K08784,ko:K08786
KEGG Pathwayko04210,ko04214,ko04215,ko05012,map04210,map04214,map04215,map05012
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000785,GO:0001101,GO:0001890,GO:0002682,GO:0002683,GO:0002697,GO:0002698,GO:0002831,GO:0002832,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0005740,GO:0005758,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0006355,GO:0006357,GO:0006508,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0007610,GO:0007626,GO:0007628,GO:0008150,GO:0008152,GO:0008219,GO:0008233,GO:0008236,GO:0008284,GO:0008344,GO:0008630,GO:0009056,GO:0009057,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009887,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009898,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010506,GO:0010507,GO:0010556,GO:0010604,GO:0010623,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010821,GO:0010822,GO:0010823,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0012505,GO:0016006,GO:0016020,GO:0016021,GO:0016043,GO:0016241,GO:0016242,GO:0016485,GO:0016540,GO:0016787,GO:0017015,GO:0017171,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0022008,GO:0022411,GO:0022414,GO:0022607,GO:0022617,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030154,GO:0030162,GO:0030163,GO:0030182,GO:0030198,GO:0030510,GO:0030512,GO:0030514,GO:0030534,GO:0030900,GO:0031012,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031347,GO:0031348,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031984,GO:0032101,GO:0032102,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032526,GO:0032991,GO:0033043,GO:0033554,GO:0033993,GO:0034097,GO:0034599,GO:0034605,GO:0035234,GO:0035456,GO:0035458,GO:0035556,GO:0035631,GO:0040008,GO:0040014,GO:0040036,GO:0042127,GO:0042175,GO:0042221,GO:0042475,GO:0042476,GO:0042802,GO:0042981,GO:0043062,GO:0043065,GO:0043066,GO:0043067,GO:0043068,GO:0043069,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043235,GO:0043280,GO:0043281,GO:0043900,GO:0043901,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044429,GO:0044432,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045786,GO:0045862,GO:0048232,GO:0048468,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048608,GO:0048609,GO:0048638,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050678,GO:0050679,GO:0050687,GO:0050688,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051082,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051246,GO:0051247,GO:0051252,GO:0051259,GO:0051260,GO:0051336,GO:0051345,GO:0051604,GO:0051704,GO:0051716,GO:0051726,GO:0052547,GO:0052548,GO:0060255,GO:0060322,GO:0060548,GO:0060717,GO:0060718,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070206,GO:0070207,GO:0070848,GO:0070887,GO:0071229,GO:0071300,GO:0071310,GO:0071345,GO:0071363,GO:0071396,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0080134,GO:0080135,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090659,GO:0097187,GO:0097190,GO:0097193,GO:0097194,GO:0098552,GO:0098562,GO:0098780,GO:0098796,GO:0098797,GO:0098802,GO:0098827,GO:0140096,GO:1900407,GO:1900408,GO:1901214,GO:1901215,GO:1901524,GO:1901525,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1901701,GO:1902175,GO:1902176,GO:1902494,GO:1902531,GO:1902532,GO:1902882,GO:1902883,GO:1903146,GO:1903147,GO:1903201,GO:1903202,GO:1903506,GO:1903844,GO:1903845,GO:1903867,GO:1904923,GO:1904924,GO:1905286,GO:1905368,GO:1905369,GO:1905370,GO:2000112,GO:2000116,GO:2001056,GO:2001141,GO:2001233,GO:2001234,GO:2001235,GO:2001236,GO:2001238,GO:2001239,GO:2001241,GO:2001242,GO:2001243,GO:2001267,GO:2001269
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0265@1,KOG1320@2759
EC3.4.21.108
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03110
Exons3
Model size1790
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12506.1573.1prot_H-paniculata_contig12506.1573.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12506 1265..3764 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.9457352-UTR-H-paniculata_contig12506:837..12641622928970.9457352-UTR-H-paniculata_contig12506:837..1264Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12506 838..1264 +
1691480686.713521-UTR-H-paniculata_contig12506:837..12641691480686.713521-UTR-H-paniculata_contig12506:837..1264Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12506 838..1264 +
1622928971.009757-UTR-H-paniculata_contig12506:3764..46801622928971.009757-UTR-H-paniculata_contig12506:3764..4680Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12506 3765..4680 +
1691480686.75505-UTR-H-paniculata_contig12506:3764..46801691480686.75505-UTR-H-paniculata_contig12506:3764..4680Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12506 3765..4680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.9646502-CDS-H-paniculata_contig12506:1264..14531622928970.9646502-CDS-H-paniculata_contig12506:1264..1453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12506 1265..1453 +
1691480686.725713-CDS-H-paniculata_contig12506:1264..14531691480686.725713-CDS-H-paniculata_contig12506:1264..1453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12506 1265..1453 +
1622928970.9774652-CDS-H-paniculata_contig12506:2103..22051622928970.9774652-CDS-H-paniculata_contig12506:2103..2205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12506 2104..2205 +
1691480686.7330928-CDS-H-paniculata_contig12506:2103..22051691480686.7330928-CDS-H-paniculata_contig12506:2103..2205Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12506 2104..2205 +
1622928970.9934146-CDS-H-paniculata_contig12506:3608..37641622928970.9934146-CDS-H-paniculata_contig12506:3608..3764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12506 3609..3764 +
1691480686.747677-CDS-H-paniculata_contig12506:3608..37641691480686.747677-CDS-H-paniculata_contig12506:3608..3764Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12506 3609..3764 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12506.1573.1

>prot_H-paniculata_contig12506.1573.1 ID=prot_H-paniculata_contig12506.1573.1|Name=mRNA_H-paniculata_contig12506.1573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
MLTHGEHERAIEIFPTFPSVGVACLPLPQIVTELRMRGRVDRPQLGMRLV
AADPGHERGRGVMVLSVTPGGAADAAGLRFGDLITEFDGKSVAKTSDVLQ
CIGREVGRRIEIVVRRDGQPGSRGLTVVTESDLISGKPPSVPGKRSSE*
back to top

mRNA from alignment at H-paniculata_contig12506:838..4680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12506.1573.1 ID=mRNA_H-paniculata_contig12506.1573.1|Name=mRNA_H-paniculata_contig12506.1573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3843bp|location=Sequence derived from alignment at H-paniculata_contig12506:838..4680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTACAAATAACCGGATTTCGCTGTGTTCGCCAGTCATAGGTGGTTGTCG
AGATATGACTTCCCCCATCGAAACACTGGACGAAAATACCCCTGTTCCTG
ACCGCATTTGTTTTCTGTTCATCGCCTTAGATCACTACTCAGTCAAATTC
TGCTGGTCATAGGGTAGAGCCCAATACACACATTCCTATGTCCTAGAAAA
GGCAGCCACGGTATAACGAACAAATTGCGTTCTTTTTTTTCGTGATCACT
GCTTGCTCTACAGCGGCTAGTTATCGCTAGCTCTGTACCTAAAATACTAG
GGCATTGTCACGGTCCACGGTAGCATTTATTGCATCGAATTATTCTGTTT
CCACAGGACGCATCTTGCCGGTTATTCCCATACCCGTATGCATTATCAGG
ATCTTTATTGTCTGTTTGTTGCTCCGCATGTTGACGCACGGTGAACATGA
ACGGGCCATCGAAATATTTCCGACTTTCCCGAGTGTTGGTGTGGCGTGTC
TGCCATTGCCTCAGATAGTGACGGAGTTAAGAATGCGAGGGCGAGTGGAT
CGACCGCAGCTGGGAATGCGATTGGTGGCAGCGGACCCTGGACATGAGAG
GGGTAGGGGCGTGATGGTAAGCAATCAGGGTTCTGTAAAGCGCGAGGAGG
GGGGCAGTAGCAATGGGTAGAAATGTAAAAATATTGATGCATGTGATGAG
TCCCAACATTTTCGTGTATGCTAGCAGTAGCTTACAGCGTAAAAACGTTT
TGCTGTCATTTTAGCACATAGTCATGGTAAAATATACTCCTTACCAATTC
TCGCATCGAAAATAAGGGTAGAAATGGATTGTGAATTGGCTCCTGTGAGG
CCTTGGGCACATGGACATGCCTGTCGCGATAGAGTTAAAAACTCGCCATA
CACTGCGATCAATTCGCCACTCATTGCGGTCAGGGGCATCAGGTGTTGAA
CAATAGTACGTTGTTGTGACCAACTACAGTAGGTTTATGTTTTGCCCCCC
CGCCTCCTCTGGACACACACACACACACACATACACCAACGTTCACCTCG
TGATCTCCTCTTGTCTAGTTTCTCGGGGCACTGTATGCCGCGCAGGAAAC
CGTTGTTAATTGGAATCGCTACAGTGCGCTACAAAGCCCCGAATGTGGAG
TGAAGTACGAGGGTGAGCGACCGGCTGACTATGTTATTTTCGGTTTAATC
ATACTTGCGTTTATTCACAATTCAGACGTGTACGATTTTTATTTCTCTTC
TTTTCGCCTGTCATAGGTTTTGAGCGTCACGCCGGGCGGGGCTGCGGATG
CAGCTGGACTGCGCTTCGGCGATCTCATCACGGAGTTTGACGGAAAGTCA
GTGGCGAAGACATCGGACGTGCGTCAAAACTTGTTTTCCCACGTTTCTTC
GCTTAACTTTCGATTTTTCTCGCTGTTGACTGAATTGCTGTATGTCAAGC
AGATTCGTGTAATAAGGGCCACTTTTTTTCAAAACCGTTATAACTCATGC
CCATGTGGCCGGTCATCTTTTGTTTTTGAACGTGCCTGACAGTCATGTGC
TCAGTTTCATCACGATTGTTCGACATGACTTCAAACGGTTCCCGAGATTC
AGCACCGTATATTAACCCCCTGCCTGCTTCAGCCCGTTCCAATCAAAGTC
GACGTGCTTGCTTAACAGACATCGGCAAAAGGTCGACCCCGAGACGGCGA
AAAAAGCCGTGGATGCGGTGCGTAGTGGGCAGTTGTCATGCCGTGCAGCT
GTTGCTGCATATGACATTTCAAGAAATGGCGTAACGGCCAGTTAATAAGT
GCAAGATAGGCATGGGTGCACGGATAGGACTATCCATGATCCTTTTCTAT
TCCGAAACTTTCGACATTCTTAGTACTTGACAGGCTCGAGTTTGGGCACA
AAGGACCGTTTTAGTCAAAGTTTGTACGATGTTTATTCATCATGTCGAGA
CAACGGCAAAAGGATCTAACTAAGTAAATAAAATATCACTATCACTGAGA
AATGAGCTCGATGGCAAGGCAAAACCAGGGGATGGAGAATTTCCCCCCCC
GGGTTATTGTAAAGAAAATGGAAAGCTCGCTTGTTGACAATGGCAGTTGA
ATCGGCAAGTGTACCAAAGGAGAGGTCACGGCGGGTCCTAGAACGTGCGC
AATGATGTGTTTCGTCAAGTAGCCCTTATACCCTCACCCTGTTTTCGGAG
CTTTTTTGGCCTTGGCATGTGCTGCGTAACACTGACTCTATCTCCATCAT
TTGTATATGTGTATATATACATATGCATTAATGGTCGTGTTGTGATGTTC
GCTTTCGCGAGATACCTTCGTGCATCCTCAATTCGTCATAGTTATGAGGA
ATGAAGAAATGGCACGGGAGGTTTCTTAAGCGATGCTTGATATTCGCATC
GGCTTTACACGATTTGTTTTTATCCGTGGGCGTCGCAAAACCGGGGTACC
ATTTTGACAACCAACCAACACACACACACACACACACACACACACACTAA
CACACATACATAGAACACACACGCCAAGCCACCTCGATCTACTTTCGCAC
GTCGGTGTACAGTGGCACGAAACGAAACTACCAAACGACCTAACGGTTTC
ACGGTTGGCACTTGCATCCCCTTGATTGCAGTCCACATCACACGGGAGCC
CCCGTCCACTACAATTGACATGGTATAACCTATAATAATCGTTTTAAACG
GTAGTCCCCCCCGTCCCGGACCCCTACTATAACGCACACTGTGCCATACT
GTTTTTCGATCCACACTGAAGGTACTGCAATGTATTGGACGCGAGGTGGG
GCGGCGCATCGAAATCGTTGTTCGGCGCGATGGGCAGCCAGGAAGCCGCG
GCCTGACCGTGGTAACCGAGTCAGACCTGATATCAGGAAAGCCGCCCAGT
GTTCCGGGAAAACGTTCTTCGGAGTGAATGAGCGGAGCGGGGTGGGACGA
AGATTGGACGAGAGTGAACCAAGCACGCCGTCGGTCTGCCCTACAGTGGC
GAGCAATATATGCAAGTGAATTAGTCAAGTGTTCAAGACGTTAGAAGAGG
AAACACTGAGAAGCTGAAAATATTATCTTGGAGCAAACACGGACAGTGGC
GAAGTTTCTGAAGTAATGGGTAGCTCTCGTGCAGAAGACGCCATCGACAT
AGGACACGTTTTCGAACGACCTTTTCTTCGAGTTGCGGTATTCCCCTCTA
TGACACCGATGTACTGCAGAATCAGGAGAATATGTACGTTTGCGGCTTCG
TATAAGGCCATCTCAGCGCGTATGAGTCTGGTGCTATCTCTTGCCGACTG
GGAGACACCAATGCTGATGCCAGATACTGTGGCCAAACATAGTAACTAAG
TCGGAGAAACCCGCAAGGGTGAACCTTGACCCAGGCCACTCCGTCATGAG
GTGATGCACAGGCCTAAGGATACCGTAGTTAAAGAGGTAAGCATAGTGCA
AGACGCGATTTGTTTTTGGGTTTGTCGAAAGCCTGCCTTTTGATGTTGGT
CGTTCAGGTCCTAGGATCGCCCTCGAATCCAGCTGATCGAACCGAGCTCA
TTGTGCAGGACACTTTACTCCATCTAAAGCTCTATAGCAAGAGCATTCTA
AATGTTATCGTGTTTCTTGTTTGTTTTTCTTATTTTTTCAATGCTGGGAC
GAGAAGGAGGTCCATGTTGCGTTGGCCCAAGAATCTGTGATATGATCCGA
AGCGAAGTGTTTGTGTGGGGCTTACCAGTCTACTACATCTTCGTTTTCTT
TTTCACATGTACGCTCACTGCAGTCCCTTCACGGAGGGACTCTACCTCAT
ACATAATTATTGTATTCAAGAGGATCTGCACAGGTCCAAAGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12506:838..4680+

>mRNA_H-paniculata_contig12506.1573.1 ID=mRNA_H-paniculata_contig12506.1573.1|Name=mRNA_H-paniculata_contig12506.1573.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig12506:838..4680+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGACGCACGGTGAACATGAACGGGCCATCGAAATATTTCCGACTTT
CCCGAGTGTTGGTGTGGCGTGTCTGCCATTGCCTCAGATAGTGACGGAGT
TAAGAATGCGAGGGCGAGTGGATCGACCGCAGCTGGGAATGCGATTGGTG
GCAGCGGACCCTGGACATGAGAGGGGTAGGGGCGTGATGATGTTGACGCA
CGGTGAACATGAACGGGCCATCGAAATATTTCCGACTTTCCCGAGTGTTG
GTGTGGCGTGTCTGCCATTGCCTCAGATAGTGACGGAGTTAAGAATGCGA
GGGCGAGTGGATCGACCGCAGCTGGGAATGCGATTGGTGGCAGCGGACCC
TGGACATGAGAGGGGTAGGGGCGTGATGGTTTTGAGCGTCACGCCGGGCG
GGGCTGCGGATGCAGCTGGACTGCGCTTCGGCGATCTCATCACGGAGTTT
GACGGAAAGTCAGTGGCGAAGACATCGGACGTTTTGAGCGTCACGCCGGG
CGGGGCTGCGGATGCAGCTGGACTGCGCTTCGGCGATCTCATCACGGAGT
TTGACGGAAAGTCAGTGGCGAAGACATCGGACGTACTGCAATGTATTGGA
CGCGAGGTGGGGCGGCGCATCGAAATCGTTGTTCGGCGCGATGGGCAGCC
AGGAAGCCGCGGCCTGACCGTGGTAACCGAGTCAGACCTGATATCAGGAA
AGCCGCCCAGTGTTCCGGGAAAACGTTCTTCGGAGTGAGTACTGCAATGT
ATTGGACGCGAGGTGGGGCGGCGCATCGAAATCGTTGTTCGGCGCGATGG
GCAGCCAGGAAGCCGCGGCCTGACCGTGGTAACCGAGTCAGACCTGATAT
CAGGAAAGCCGCCCAGTGTTCCGGGAAAACGTTCTTCGGAGTGA
back to top