mRNA_H-paniculata_contig12505.1572.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
Overview
Homology
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: D7FSI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI4_ECTSI) HSP 1 Score: 367 bits (942), Expect = 1.290e-121 Identity = 194/305 (63.61%), Postives = 236/305 (77.38%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWREQF 915 R A++AIRAFNVETA IKD VRGNV+PG+MRMQWWKD++AD+F G+PPP PVALAL+ VV+ Q +GGLTRRWFDRV+DARMADLD +QP T+ EMETYAE TASSLLYLSLE+AGVRA P G +GHAA HVGKA G+CTLLRS+ALP P +AL+ G + + +C+LP++VMR+ L H VL+RGP+ +KEAHALAE VF VA+VAKGH++ A EGLAAA ++ GG+ LPAGAFAALLPGVR WYLE L+ C F+AFDE+LRP+SP FQLRL +AV E+F Sbjct: 41 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRMQWWKDTMADVFVGEPPPLPVALALAEVVANQ-----------KGGLTRRWFDRVLDARMADLDRTQPETLEEMETYAENTASSLLYLSLELAGVRAGA-------GP--GAAALGHAAGHVGKAAGICTLLRSLALPP-PPAALSSGSIGFAESCVLPSDVMRRFLLRHAVLERGPQDDKEAHALAECVFAVASVAKGHIEAAEEGLAAAREETGGK-LPAGAFAALLPGVRVAWYLETLQACGFNAFDESLRPQSPFKFQLRLGRAVITEKF 323
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A835YPK2_9STRA (Squalene/phytoene synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK2_9STRA) HSP 1 Score: 211 bits (538), Expect = 5.010e-61 Identity = 134/312 (42.95%), Postives = 182/312 (58.33%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDP-------PPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWREQF 915 R + +A+RAFNVE A+IK+ VR N G MRMQWW D + +++G PP+PV +AL+ V +QH GLTRRW +R++ AR +L++ ++ ++ETYAE+TASSLLYLSLE AGV E E HAA H+GKA G+CTLLR++ + + +LP +++RK+ ++ VL G +TE EA ALA +DVA VAKGHM+ +G AS GL AF ALLPGVRA WYLE LE+ F+AFD +L PRS + FQ R+A+A +F Sbjct: 63 RPSLLALRAFNVEIASIKEAVRNNTRSGTMRMQWWMDVVNAVYSGGNGGDARVLPPEPVCVALNQAV-QQH------------GLTRRWLERMIAARRHELEAPGWTSIADLETYAEHTASSLLYLSLEAAGVA--DERAE-------------HAAGHIGKAVGICTLLRAVQHHSAQKLS------------VLPGQLLRKHLVASTVLFNGARTEAEAEALAACFYDVACVAKGHME---QGQELAS------GLSNDAFRALLPGVRAAWYLEALEKAGFNAFDASLTPRSWIPFQFRVARAAMTHKF 325
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A4D9CW87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW87_9STRA) HSP 1 Score: 202 bits (513), Expect = 1.840e-57 Identity = 128/302 (42.38%), Postives = 167/302 (55.30%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWR 906 R A A+RAFNVETA IKDV RGN +PG+MRMQWW++ ++ I+ G P PVA AL V + LTRRW DR+++AR DL + QP + E+E YAE TASSLLYL+LE VR T HAASHVG+ATG+ T+LR+ QS +P E+ R+ ++ + RGP++ + A AL++ F+VAT A HM+ A E LA+ G L ALLP VR YL+ L++ F+A D+ L PRS L FQLRL A WR Sbjct: 52 RRAYFALRAFNVETALIKDVARGNTLPGQMRMQWWREVISAIYQGKSPAHPVARALCEAVQAHN-------------LTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTAD---------------HAASHVGRATGIATVLRATKFHAAHQSLY------------VPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGP-LSRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWR 312
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A6P4YWM6_BRABE (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YWM6_BRABE) HSP 1 Score: 146 bits (369), Expect = 4.840e-37 Identity = 101/297 (34.01%), Postives = 154/297 (51.85%), Query Frame = 1 Query: 7 AAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLA-FQLRLAK 894 AA A+RAFNVE A ++D V + G+MRMQ+WKD+LADI+ PP QPVA L+ V GLT+RWF R++D R+ +LD + +E Y+E T SS+LYL+LEI G++ HAASH+GKA G+CT LR A P + PMDV C +S + RG + +K + + ++++A+++ H++ A S K+ +P + +A LP + +YL+++++ F+ FD +L+ R L F L L K Sbjct: 20 AAFAVRAFNVELALVRDSVTDKNI-GKMRMQFWKDTLADIYQERPPQQPVAQELAKAVDSC-------------GLTKRWFSRILDNRIENLDDQPHRNLTALEDYSEQTVSSVLYLTLEILGIKDV---------------HADHAASHIGKAIGICTALR--AAPYLANRRRVFLPMDVMIQC----------GVSQEDIVRGRQDQK----VKDVMYEIASLSHSHLEKA------RSLKKD---VPKKSMSAFLPALSCDFYLKRIQKVDFNIFDSSLQQRDTLLPFHLLLQK 262
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A8K1C5K0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5K0_PYTOL) HSP 1 Score: 147 bits (371), Expect = 8.280e-37 Identity = 106/302 (35.10%), Postives = 156/302 (51.66%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIF---AGDPPPQPVAL-ALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAK 894 R + AIRA N E A++KD +R N G++RMQWW++++ +++ A P+ + L ALS + LTRRWF+R++DAR DLD+ QPHT++E+E YA+ TA+SLLYL+LE GVR + AA H G A G+ TLLR P LA + LP +++ K+ L++ + + E LA VF+VA LA+E L A+ + + +P A ALL V + YLE+LE F+ FD +L RSP+ L++ K Sbjct: 56 RSSFFAIRAMNAELASVKDSIRSNPATGKIRMQWWRENIYNLYSPRATRAVPETMLLRALSKAIDDHE-------------LTRRWFERLLDARDEDLDTDQPHTLHELEVYADKTAASLLYLTLECLGVRDGAADR---------------AAGHAGVAVGLTTLLRG-----TPYH-LAHNQL------YLPEDLLLKHDLTNEHFEAASQDPAEGKKLAPVVFEVAC-------LALEHLRASRELT--RDVPKEARPALLSVVSSSMYLEQLERVNFNVFDPSLMQRSPMQLHLQVLK 308
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: UPI0009E2A20F (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2A20F) HSP 1 Score: 146 bits (369), Expect = 1.350e-36 Identity = 104/302 (34.44%), Postives = 151/302 (50.00%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWR 906 R AA A+RAFNVE A I+D+V + G+MR+Q+W+DSL + F G+PP QPVAL L+ +++ LT+ WF R++DAR LD+ T N +E ++E T SS+LYL LE GV+ + HAASH+GKA G+ TLLR+ G + +P VM K +S + RG T+ + + +D+A++A H+ A ++ A P A A LP V YL K+++ F+ FD +LR R+ L L K WR Sbjct: 60 RTAAFAVRAFNVELARIQDIVSEPTI-GKMRLQFWRDSLENTFQGNPPQQPVALKLAEAIARHK-------------LTKGWFSRLIDARERSLDNRPHATTNALEEHSENTVSSVLYLILECLGVKDV---------------QADHAASHLGKAIGVVTLLRATPF---------HGNKGKVY---MPNNVMIKYGVSQEDIIRGKTTQP----VKDVAYDLASLAHSHLSTAQSLMSKA---------PKAASRAFLPIVSCQTYLTKIQQADFNIFDPSLRERNHL-LPFLLLKHAWR 306
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A8B6ZD98_ORYAF (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 n=1 Tax=Orycteropus afer afer TaxID=1230840 RepID=A0A8B6ZD98_ORYAF) HSP 1 Score: 147 bits (370), Expect = 1.750e-36 Identity = 103/305 (33.77%), Postives = 151/305 (49.51%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWREQF 915 R AA A+RAFNVE A +KD V + G+MRMQ+WK+++ DI+ PP QPVA+ L + + + LT+RW +++D R +LD + E+ETYAE T SSLLYL+LEI G++ HAASH+GKA G+ T LR A P PMD+ C+L HGV Q + + + + ++D+A+ A H+ A + + +P AF A LP V YL+K++ FD F L+ ++PL L L WR+++ Sbjct: 84 RSAAFALRAFNVELAQVKDSVSEKTI-GQMRMQFWKNTVEDIYCDSPPHQPVAIELWKAIKRHN-------------LTKRWLMKIIDEREKNLDDKMYRNIQELETYAENTQSSLLYLTLEILGIKDL---------------HADHAASHIGKAQGIVTCLR--ATPYHGSRRKVFLPMDI---CML-----------HGVSQEDFLRKSQDKNVRDVIYDIASQAHLHLKHA---------RSFHKSVPVKAFPAFLPTVALEDYLKKIQRVDFDIFHPALQQKNPL-LPLSLYIQSWRKRY 333
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A2B4SSA3_STYPI (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SSA3_STYPI) HSP 1 Score: 146 bits (369), Expect = 2.210e-36 Identity = 105/302 (34.77%), Postives = 152/302 (50.33%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACI-LPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVW 903 R + A+RAFNVE A ++D V V+ GRMR+Q+W+D+L D F G+PP QPVAL L+ V+K LT+RWF R++DAR LD+ T N +E ++E + S +LYL LE G+R + HAASH+GKA G+ T LRS P S + LP +++ K+ +SH + RG K + + E +++A++A H+ A ++ A P A A LP V YL ++++ FD F TLR R+ L L L K W Sbjct: 81 RTSVFAVRAFNVELARVQDSVSDPVI-GRMRLQFWRDTLEDTFLGNPPQQPVALELAEAVTKFK-------------LTKRWFSRLIDARERSLDNRPHETANALEEHSENSVSPVLYLVLECLGIRDV---------------QADHAASHLGKAIGVATALRST-------------PFHGSKGKVYLPNDILIKHGVSHEDIIRGRKQQP----VKEVTYELASLAHAHLSKAQTLISDA---------PKPASRAFLPMVSCRTYLTQIQKVDFDIFHPTLRERNHL-LPLLLLKHAW 326
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: UPI0018D64B49 (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D64B49) HSP 1 Score: 146 bits (368), Expect = 2.270e-36 Identity = 105/291 (36.08%), Postives = 152/291 (52.23%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACIL-PTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPL 870 R +A A+RAFNVETA+I D V + G MR+Q+WKD++A I+ G PP QPVA+ LS VV +R L++RW R+++AR LD+ +V E+ETYAE T+SSLLYL+LE GV+ NA HAASH+GKA G+ TLLR+ P VS IL P +V K+++SH + RG + + + ++D+A++A H++ A A+ +P A A L YL +L++ FD F + + L Sbjct: 67 RASAFALRAFNVETASINDNVTEKHI-GLMRLQFWKDAIAKIYEGAPPQQPVAMELSRVV-------------HRHKLSKRWLTRIIEARAETLDAKPYQSVEELETYAENTSSSLLYLTLEALGVKD-------VNAD--------HAASHIGKAQGIVTLLRAT-------------PYHVSRRQILLPLDVTIKHNVSHEAILRGNAEQP----VKDVIYDIASIAHVHLETARSFKAS---------VPREALPAFLVTAAVEAYLRRLQKVNFDVFHKNCLKKESL 302
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: UPI0010FC8D02 (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FC8D02) HSP 1 Score: 145 bits (367), Expect = 2.740e-36 Identity = 106/302 (35.10%), Postives = 150/302 (49.67%), Query Frame = 1 Query: 1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACI-LPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVW 903 R + A+RAFNVE A ++D V + GRMR+Q+W+DSL DI+ PP QPVAL L+ VSK L +RWF R++DAR +L + T +E ++E SS+LYL LE G++ + HAASH+GKA G+ TLLR+ P S + LP ++M K+S+SH + RG K A ++ + +D+A+ A H+ A +A LP A A LP V YL K+++ FD F TLR R+ L + L K W Sbjct: 62 RTSVFAVRAFNVELARVQDSVSDPNI-GRMRLQFWRDSLDDIYKDHPPQQPVALELAQAVSKHK-------------LMKRWFSRLIDARENNLSNRPYQTTEALEEHSEKAVSSVLYLILECLGIKDV---------------QADHAASHLGKAIGLVTLLRAT-------------PFHGSRGKVYLPNDIMMKHSVSHEDIIRG----KTAQSVKDVAYDLASSAHIHLTTAKPLIAK---------LPKSASRAFLPMVPCQAYLSKIQQVDFDIFHPTLRERNHL-LPVHLLKHAW 307 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12505.1572.1 >prot_H-paniculata_contig12505.1572.1 ID=prot_H-paniculata_contig12505.1572.1|Name=mRNA_H-paniculata_contig12505.1572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp MAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALback to top mRNA from alignment at H-paniculata_contig12505:4083..7301- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig12505.1572.1 ID=mRNA_H-paniculata_contig12505.1572.1|Name=mRNA_H-paniculata_contig12505.1572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3219bp|location=Sequence derived from alignment at H-paniculata_contig12505:4083..7301- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig12505:4083..7301- >mRNA_H-paniculata_contig12505.1572.1 ID=mRNA_H-paniculata_contig12505.1572.1|Name=mRNA_H-paniculata_contig12505.1572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig12505:4083..7301- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |