mRNA_H-paniculata_contig12505.1572.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12505.1572.1
Unique NamemRNA_H-paniculata_contig12505.1572.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: D7FSI4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSI4_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 1.290e-121
Identity = 194/305 (63.61%), Postives = 236/305 (77.38%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWREQF 915
            R A++AIRAFNVETA IKD VRGNV+PG+MRMQWWKD++AD+F G+PPP PVALAL+ VV+ Q           +GGLTRRWFDRV+DARMADLD +QP T+ EMETYAE TASSLLYLSLE+AGVRA          P  G   +GHAA HVGKA G+CTLLRS+ALP  P +AL+ G +  + +C+LP++VMR+  L H VL+RGP+ +KEAHALAE VF VA+VAKGH++ A EGLAAA ++ GG+ LPAGAFAALLPGVR  WYLE L+ C F+AFDE+LRP+SP  FQLRL +AV  E+F
Sbjct:   41 RPASLAIRAFNVETAAIKDSVRGNVMPGKMRMQWWKDTMADVFVGEPPPLPVALALAEVVANQ-----------KGGLTRRWFDRVLDARMADLDRTQPETLEEMETYAENTASSLLYLSLELAGVRAGA-------GP--GAAALGHAAGHVGKAAGICTLLRSLALPP-PPAALSSGSIGFAESCVLPSDVMRRFLLRHAVLERGPQDDKEAHALAECVFAVASVAKGHIEAAEEGLAAAREETGGK-LPAGAFAALLPGVRVAWYLETLQACGFNAFDESLRPQSPFKFQLRLGRAVITEKF 323          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A835YPK2_9STRA (Squalene/phytoene synthase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPK2_9STRA)

HSP 1 Score: 211 bits (538), Expect = 5.010e-61
Identity = 134/312 (42.95%), Postives = 182/312 (58.33%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDP-------PPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWREQF 915
            R + +A+RAFNVE A+IK+ VR N   G MRMQWW D +  +++G         PP+PV +AL+  V +QH            GLTRRW +R++ AR  +L++    ++ ++ETYAE+TASSLLYLSLE AGV    E  E             HAA H+GKA G+CTLLR++      + +            +LP +++RK+ ++  VL  G +TE EA ALA   +DVA VAKGHM+   +G   AS      GL   AF ALLPGVRA WYLE LE+  F+AFD +L PRS + FQ R+A+A    +F
Sbjct:   63 RPSLLALRAFNVEIASIKEAVRNNTRSGTMRMQWWMDVVNAVYSGGNGGDARVLPPEPVCVALNQAV-QQH------------GLTRRWLERMIAARRHELEAPGWTSIADLETYAEHTASSLLYLSLEAAGVA--DERAE-------------HAAGHIGKAVGICTLLRAVQHHSAQKLS------------VLPGQLLRKHLVASTVLFNGARTEAEAEALAACFYDVACVAKGHME---QGQELAS------GLSNDAFRALLPGVRAAWYLEALEKAGFNAFDASLTPRSWIPFQFRVARAAMTHKF 325          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A4D9CW87_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CW87_9STRA)

HSP 1 Score: 202 bits (513), Expect = 1.840e-57
Identity = 128/302 (42.38%), Postives = 167/302 (55.30%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWR 906
            R A  A+RAFNVETA IKDV RGN +PG+MRMQWW++ ++ I+ G  P  PVA AL   V   +             LTRRW DR+++AR  DL + QP  + E+E YAE TASSLLYL+LE   VR  T                 HAASHVG+ATG+ T+LR+       QS              +P E+ R+  ++   + RGP++ + A AL++  F+VAT A  HM+ A E LA+      G  L      ALLP VR   YL+ L++  F+A D+ L PRS L FQLRL  A WR
Sbjct:   52 RRAYFALRAFNVETALIKDVARGNTLPGQMRMQWWREVISAIYQGKSPAHPVARALCEAVQAHN-------------LTRRWLDRLLEAREGDLGNIQPTRMEELEDYAENTASSLLYLTLEALHVRHPTAD---------------HAASHVGRATGIATVLRATKFHAAHQSLY------------VPLEIQREFKVNVNDILRGPESPEAAQALSDMFFEVATQAHLHMEHAREMLASPPPSSSGP-LSRNTITALLPAVRTTMYLKALQKNGFNALDQDLLPRSHLEFQLRLWWANWR 312          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A6P4YWM6_BRABE (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6-like n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YWM6_BRABE)

HSP 1 Score: 146 bits (369), Expect = 4.840e-37
Identity = 101/297 (34.01%), Postives = 154/297 (51.85%), Query Frame = 1
Query:    7 AAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLA-FQLRLAK 894
            AA A+RAFNVE A ++D V    + G+MRMQ+WKD+LADI+   PP QPVA  L+  V                GLT+RWF R++D R+ +LD      +  +E Y+E T SS+LYL+LEI G++                    HAASH+GKA G+CT LR  A P +        PMDV   C           +S   + RG + +K    + + ++++A+++  H++ A       S K+    +P  + +A LP +   +YL+++++  F+ FD +L+ R  L  F L L K
Sbjct:   20 AAFAVRAFNVELALVRDSVTDKNI-GKMRMQFWKDTLADIYQERPPQQPVAQELAKAVDSC-------------GLTKRWFSRILDNRIENLDDQPHRNLTALEDYSEQTVSSVLYLTLEILGIKDV---------------HADHAASHIGKAIGICTALR--AAPYLANRRRVFLPMDVMIQC----------GVSQEDIVRGRQDQK----VKDVMYEIASLSHSHLEKA------RSLKKD---VPKKSMSAFLPALSCDFYLKRIQKVDFNIFDSSLQQRDTLLPFHLLLQK 262          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A8K1C5K0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5K0_PYTOL)

HSP 1 Score: 147 bits (371), Expect = 8.280e-37
Identity = 106/302 (35.10%), Postives = 156/302 (51.66%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIF---AGDPPPQPVAL-ALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAK 894
            R +  AIRA N E A++KD +R N   G++RMQWW++++ +++   A    P+ + L ALS  +                 LTRRWF+R++DAR  DLD+ QPHT++E+E YA+ TA+SLLYL+LE  GVR     +               AA H G A G+ TLLR       P   LA   +       LP +++ K+ L++   +   +   E   LA  VF+VA        LA+E L A+ +    + +P  A  ALL  V +  YLE+LE   F+ FD +L  RSP+   L++ K
Sbjct:   56 RSSFFAIRAMNAELASVKDSIRSNPATGKIRMQWWRENIYNLYSPRATRAVPETMLLRALSKAIDDHE-------------LTRRWFERLLDARDEDLDTDQPHTLHELEVYADKTAASLLYLTLECLGVRDGAADR---------------AAGHAGVAVGLTTLLRG-----TPYH-LAHNQL------YLPEDLLLKHDLTNEHFEAASQDPAEGKKLAPVVFEVAC-------LALEHLRASRELT--RDVPKEARPALLSVVSSSMYLEQLERVNFNVFDPSLMQRSPMQLHLQVLK 308          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: UPI0009E2A20F (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2A20F)

HSP 1 Score: 146 bits (369), Expect = 1.350e-36
Identity = 104/302 (34.44%), Postives = 151/302 (50.00%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWR 906
            R AA A+RAFNVE A I+D+V    + G+MR+Q+W+DSL + F G+PP QPVAL L+  +++               LT+ WF R++DAR   LD+    T N +E ++E T SS+LYL LE  GV+                 +  HAASH+GKA G+ TLLR+             G     +   +P  VM K  +S   + RG  T+     + +  +D+A++A  H+  A   ++ A         P  A  A LP V    YL K+++  F+ FD +LR R+ L     L K  WR
Sbjct:   60 RTAAFAVRAFNVELARIQDIVSEPTI-GKMRLQFWRDSLENTFQGNPPQQPVALKLAEAIARHK-------------LTKGWFSRLIDARERSLDNRPHATTNALEEHSENTVSSVLYLILECLGVKDV---------------QADHAASHLGKAIGVVTLLRATPF---------HGNKGKVY---MPNNVMIKYGVSQEDIIRGKTTQP----VKDVAYDLASLAHSHLSTAQSLMSKA---------PKAASRAFLPIVSCQTYLTKIQQADFNIFDPSLRERNHL-LPFLLLKHAWR 306          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A8B6ZD98_ORYAF (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 n=1 Tax=Orycteropus afer afer TaxID=1230840 RepID=A0A8B6ZD98_ORYAF)

HSP 1 Score: 147 bits (370), Expect = 1.750e-36
Identity = 103/305 (33.77%), Postives = 151/305 (49.51%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWREQF 915
            R AA A+RAFNVE A +KD V    + G+MRMQ+WK+++ DI+   PP QPVA+ L   + + +             LT+RW  +++D R  +LD      + E+ETYAE T SSLLYL+LEI G++                    HAASH+GKA G+ T LR  A P          PMD+   C+L           HGV Q     + +   + + ++D+A+ A  H+  A         +   + +P  AF A LP V    YL+K++   FD F   L+ ++PL   L L    WR+++
Sbjct:   84 RSAAFALRAFNVELAQVKDSVSEKTI-GQMRMQFWKNTVEDIYCDSPPHQPVAIELWKAIKRHN-------------LTKRWLMKIIDEREKNLDDKMYRNIQELETYAENTQSSLLYLTLEILGIKDL---------------HADHAASHIGKAQGIVTCLR--ATPYHGSRRKVFLPMDI---CML-----------HGVSQEDFLRKSQDKNVRDVIYDIASQAHLHLKHA---------RSFHKSVPVKAFPAFLPTVALEDYLKKIQRVDFDIFHPALQQKNPL-LPLSLYIQSWRKRY 333          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: A0A2B4SSA3_STYPI (NADH dehydrogenase (Ubiquinone) complex I, assembly factor 6 n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A2B4SSA3_STYPI)

HSP 1 Score: 146 bits (369), Expect = 2.210e-36
Identity = 105/302 (34.77%), Postives = 152/302 (50.33%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACI-LPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVW 903
            R +  A+RAFNVE A ++D V   V+ GRMR+Q+W+D+L D F G+PP QPVAL L+  V+K               LT+RWF R++DAR   LD+    T N +E ++E + S +LYL LE  G+R                 +  HAASH+GKA G+ T LRS              P   S   + LP +++ K+ +SH  + RG K +     + E  +++A++A  H+  A   ++ A         P  A  A LP V    YL ++++  FD F  TLR R+ L   L L K  W
Sbjct:   81 RTSVFAVRAFNVELARVQDSVSDPVI-GRMRLQFWRDTLEDTFLGNPPQQPVALELAEAVTKFK-------------LTKRWFSRLIDARERSLDNRPHETANALEEHSENSVSPVLYLVLECLGIRDV---------------QADHAASHLGKAIGVATALRST-------------PFHGSKGKVYLPNDILIKHGVSHEDIIRGRKQQP----VKEVTYELASLAHAHLSKAQTLISDA---------PKPASRAFLPMVSCRTYLTQIQKVDFDIFHPTLRERNHL-LPLLLLKHAW 326          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: UPI0018D64B49 (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D64B49)

HSP 1 Score: 146 bits (368), Expect = 2.270e-36
Identity = 105/291 (36.08%), Postives = 152/291 (52.23%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACIL-PTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPL 870
            R +A A+RAFNVETA+I D V    + G MR+Q+WKD++A I+ G PP QPVA+ LS VV             +R  L++RW  R+++AR   LD+    +V E+ETYAE T+SSLLYL+LE  GV+         NA         HAASH+GKA G+ TLLR+              P  VS   IL P +V  K+++SH  + RG   +     + + ++D+A++A  H++ A    A+         +P  A  A L       YL +L++  FD F +    +  L
Sbjct:   67 RASAFALRAFNVETASINDNVTEKHI-GLMRLQFWKDAIAKIYEGAPPQQPVAMELSRVV-------------HRHKLSKRWLTRIIEARAETLDAKPYQSVEELETYAENTSSSLLYLTLEALGVKD-------VNAD--------HAASHIGKAQGIVTLLRAT-------------PYHVSRRQILLPLDVTIKHNVSHEAILRGNAEQP----VKDVIYDIASIAHVHLETARSFKAS---------VPREALPAFLVTAAVEAYLRRLQKVNFDVFHKNCLKKESL 302          
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Match: UPI0010FC8D02 (NADH dehydrogenase (ubiquinone) complex I, assembly factor 6-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI0010FC8D02)

HSP 1 Score: 145 bits (367), Expect = 2.740e-36
Identity = 106/302 (35.10%), Postives = 150/302 (49.67%), Query Frame = 1
Query:    1 RHAAMAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVALALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNEMETYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVGKATGMCTLLRSIALPKVPQSALAEGPMDVSFACI-LPTEVMRKNSLSHGVLQRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAGAFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVW 903
            R +  A+RAFNVE A ++D V    + GRMR+Q+W+DSL DI+   PP QPVAL L+  VSK               L +RWF R++DAR  +L +    T   +E ++E   SS+LYL LE  G++                 +  HAASH+GKA G+ TLLR+              P   S   + LP ++M K+S+SH  + RG    K A ++ +  +D+A+ A  H+  A   +A          LP  A  A LP V    YL K+++  FD F  TLR R+ L   + L K  W
Sbjct:   62 RTSVFAVRAFNVELARVQDSVSDPNI-GRMRLQFWRDSLDDIYKDHPPQQPVALELAQAVSKHK-------------LMKRWFSRLIDARENNLSNRPYQTTEALEEHSEKAVSSVLYLILECLGIKDV---------------QADHAASHLGKAIGLVTLLRAT-------------PFHGSRGKVYLPNDIMMKHSVSHEDIIRG----KTAQSVKDVAYDLASSAHIHLTTAKPLIAK---------LPKSASRAFLPMVPCQAYLSKIQQVDFDIFHPTLRERNHL-LPVHLLKHAW 307          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12505.1572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FSI4_ECTSI1.290e-12163.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YPK2_9STRA5.010e-6142.95Squalene/phytoene synthase-domain-containing prote... [more]
A0A4D9CW87_9STRA1.840e-5742.38Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A6P4YWM6_BRABE4.840e-3734.01NADH dehydrogenase (Ubiquinone) complex I, assembl... [more]
A0A8K1C5K0_PYTOL8.280e-3735.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
UPI0009E2A20F1.350e-3634.44NADH dehydrogenase (ubiquinone) complex I, assembl... [more]
A0A8B6ZD98_ORYAF1.750e-3633.77NADH dehydrogenase (Ubiquinone) complex I, assembl... [more]
A0A2B4SSA3_STYPI2.210e-3634.77NADH dehydrogenase (Ubiquinone) complex I, assembl... [more]
UPI0018D64B492.270e-3636.08NADH dehydrogenase (ubiquinone) complex I, assembl... [more]
UPI0010FC8D022.740e-3635.10NADH dehydrogenase (ubiquinone) complex I, assembl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12505contigH-paniculata_contig12505:4083..7301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.9
Seed ortholog evalue1.8e-98
Seed eggNOG ortholog2880.D7FSI4
KEGG koko:K18163
KEGG Pathwayko04714,map04714
Hectar predicted targeting categoryother localisation
EggNOG free text desc.mitochondrial respiratory chain complex I assembly
EggNOG OGsCOG1562@1,KOG4411@2759
Ec32 ortholog descriptionIsoprenoid synthase domain
Ec32 orthologEc-11_003830.1
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029
Exons4
Model size1442
Cds size906
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12505.1572.1prot_H-paniculata_contig12505.1572.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12505 4607..7289 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.8077605-UTR-H-paniculata_contig12505:4082..46061622928970.8077605-UTR-H-paniculata_contig12505:4082..4606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12505 4083..4606 -
1691480686.640479-UTR-H-paniculata_contig12505:4082..46061691480686.640479-UTR-H-paniculata_contig12505:4082..4606Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12505 4083..4606 -
1622928970.8962266-UTR-H-paniculata_contig12505:7289..73011622928970.8962266-UTR-H-paniculata_contig12505:7289..7301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12505 7290..7301 -
1691480686.7023046-UTR-H-paniculata_contig12505:7289..73011691480686.7023046-UTR-H-paniculata_contig12505:7289..7301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12505 7290..7301 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.825668-CDS-H-paniculata_contig12505:4606..49691622928970.825668-CDS-H-paniculata_contig12505:4606..4969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12505 4607..4969 -
1691480686.6528242-CDS-H-paniculata_contig12505:4606..49691691480686.6528242-CDS-H-paniculata_contig12505:4606..4969Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12505 4607..4969 -
1622928970.8437903-CDS-H-paniculata_contig12505:5820..60551622928970.8437903-CDS-H-paniculata_contig12505:5820..6055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12505 5821..6055 -
1691480686.6635287-CDS-H-paniculata_contig12505:5820..60551691480686.6635287-CDS-H-paniculata_contig12505:5820..6055Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12505 5821..6055 -
1622928970.865794-CDS-H-paniculata_contig12505:6536..67351622928970.865794-CDS-H-paniculata_contig12505:6536..6735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12505 6537..6735 -
1691480686.6816676-CDS-H-paniculata_contig12505:6536..67351691480686.6816676-CDS-H-paniculata_contig12505:6536..6735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12505 6537..6735 -
1622928970.8843122-CDS-H-paniculata_contig12505:7180..72891622928970.8843122-CDS-H-paniculata_contig12505:7180..7289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12505 7181..7289 -
1691480686.6911643-CDS-H-paniculata_contig12505:7180..72891691480686.6911643-CDS-H-paniculata_contig12505:7180..7289Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12505 7181..7289 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12505.1572.1

>prot_H-paniculata_contig12505.1572.1 ID=prot_H-paniculata_contig12505.1572.1|Name=mRNA_H-paniculata_contig12505.1572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=302bp
MAIRAFNVETATIKDVVRGNVVPGRMRMQWWKDSLADIFAGDPPPQPVAL
ALSHVVSKQHIAAGEGGGDYRGGLTRRWFDRVVDARMADLDSSQPHTVNE
METYAEYTASSLLYLSLEIAGVRAWTEGQEGTNAPIVGINEIGHAASHVG
KATGMCTLLRSIALPKVPQSALAEGPMDVSFACILPTEVMRKNSLSHGVL
QRGPKTEKEAHALAESVFDVATVAKGHMDLAVEGLAAASDKRGGQGLPAG
AFAALLPGVRAMWYLEKLEECQFDAFDETLRPRSPLAFQLRLAKAVWREQ
F*
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mRNA from alignment at H-paniculata_contig12505:4083..7301-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12505.1572.1 ID=mRNA_H-paniculata_contig12505.1572.1|Name=mRNA_H-paniculata_contig12505.1572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3219bp|location=Sequence derived from alignment at H-paniculata_contig12505:4083..7301- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCATGCAGCGATGGCTATCCGGGCGTTTAACGTGGAGACTGCGACGAT CAAAGATGTTGTTCGAGGCAACGTGGTGCCTGGGAGAATGAGAATGCAAT GGTGGAAGGATTCCTTGGCAGGTAGGTGAGTAGGTAGGGATGCGCCGCGC GCCGCCAATATTATGATTGGAACACGTACCCGCACAGCGCCTTCTATAGC GAACAGGCTGTCATGTACTTAATGAGCTTCATTCGATGCTCTCTGTGCAG ACGGCGGACAGTCCACGTGCTGTTGTTCTTATTTGCTTCGCGAAATTGTC CTGTTTCGGTCAAATGATGGGGGCACCTCGGTCTGTCGAATGGCTGAAAA TTCGTAAGTGCTTGAATGCCCCCAGCCGCGAGCGGGGGGTCTGTAATTGC CAATCCAGTCATGATCCACAGCGATTTTTGCGTTGACCACTTGAAGCCTA TTTTTGCTCACTAACAAAATATACCATCTCAAAAGTTAGGTAGTCTCGTG TCGTTCTTGGTTTTTGTGCCTCTTGCTTGTTTTCTTCTCTTTTCTTTGCT TTCCCATCGAGTCAAGACATCTTTGCGGGGGATCCGCCGCCCCAACCCGT GGCCTTGGCGCTGTCACACGTCGTCAGCAAGCAGCACATTGCAGCAGGAG AGGGCGGCGGCGACTATAGAGGAGGGCTGACCCGTCGGTGGTTTGACCGT GTCGTTGACGCGAGGATGGCAGACTTGGACTCGTCGCAACCACATACCGT CAACGAGATGGAAACGTGAGTTTTATATTTTCACCTCCCCGCGAATATCG CTCTGCTGTGCTGGACTGTACGGCAGGCTATGAGTATGGTCGAGTGCGGG TGCAAGTAGGGTTGATCTCACGGATGCCCCACCACTGACGACACGAAGGG TATAACGACTCATTCGTTGTTTCAATCTTGCTCATGGGTATGTGTAGCCC GAGTTTTTGTAGGCAAACAACCTCAGAATTACCTCGCCCGCCCCTGGTCT AATTTTTCAATCCAAGCTATGTTTTATTGCGCTAGTATATCTAGTGAAAG GTTCCCACGGGGTCATTCCAATGACCAAACGTTCGCTCTCTAGATTTCGT GAAACTCGACTACTGAAAAAGAATGACTTCTATACTTACCTCCTTCCCAA CTTTTTCCATGTCGTTTTTTGTCTTGTGCCCATTTTTTTTTGCTGTCAAA TTACATGTCATCCCACCGATCAATTGTAAATACAATCACAAAAAAGTTAC GCGGAGTATACGGCGTCGTCCCTCTTGTACCTAAGCCTTGAGATCGCGGG TGTCCGGGCGTGGACAGAGGGACAAGAAGGGACGAATGCTCCGATAGTGG GAATCAATGAAATTGGCCACGCGGCGAGTCACGTAGGAAAGGCAACCGGC ATGTGCACACTTTTGCGATCAATTGCGCTGCCGAAGGTGCCGCAGAGTGC CCTGGCGGAGGGTCCTATGGATGTGAGTTTCGTTGCTCACCTACCGTGGC GGAACCGTAACGACGGATAAACTGATTTCGGGGGCCGCCTCAGACCTAAG TACCTGTTTATATTTTTAAGTGAGACCAACATATCTGCGCGTGCCCCTAA GGCTGTTCCGAGCTTTCATTTGTATCTGATTACAGGGGATTTTGGTGTCG CGTTATGCGTGGAGAACCTGACACATTTGAATAAAAAGAGCGAAATTGTT ACAGAAGTATAGATTCACAAGACGAGGTGTCCACAGCCAGAGGGCAGGTA CCAGAGGGGTGTTTTGTATTTGGGGTAGCAATTGGTCGTATAAGCCTTCC TTTAACTACTTGTGCATCGACAAATTGTTTTGAGGGTTAGCGATAGAGAG GTGTCTGGGGTGTAAAATGGGGTTGTGAGAACGTGAGCCGTTGACCAAAT GCTGCTGTTACCACGAGTTACAGGGCTTGCCAAACACCCCCAGGATTGCA TCGTCCCCCGTCCGCCCGCCCCCATTCCCAACTTTTTCCGTGAGAAAAGA GAGTATATTTCAGAGCGCAGCGGCTTTGAAATCTTCTGGCGAGCAGCTTT CCAACAACCGCAATGGGCGCTTGGAGTAAGGCCTGACAACCCCTAATGTT CCGTTTTGGGGCACAGTTCGAATTCCACACCGGGACACCGCGATTCTGTT CGATTAATACACCTTGTACAGGCAACCGGCCGATACAGAGGGGAAAAAAG TGCACGCGATACTAATTTTTCAACATCAGTGGTATTTTCGTAGTATTGCA AGTTCATGCGCTGTTCCCTGTTCCAGTATCCCAATCCGCACTTTTACGAC TGGATCTGACGTCAAATCAATCAATCAATCAGGCCTGCATCCTGCCGACG GAGGTAATGAGGAAGAACTCCCTTTCTCACGGGGTCCTTCAAAGGGGTCC CAAGACTGAAAAAGAAGCACATGCACTCGCAGAGAGTGTGTTCGATGTAG CTACCGTCGCCAAGGGGCACATGGACCTGGCGGTTGAGGGTTTGGCGGCC GCAAGTGACAAACGAGGCGGTCAGGGGTTGCCGGCCGGGGCCTTCGCGGC TCTATTGCCGGGCGTTAGGGCTATGTGGTACTTGGAGAAGCTGGAGGAGT GCCAGTTTGATGCGTTTGACGAGACATTGCGACCAAGAAGCCCGTTGGCG TTTCAGCTTCGGTTGGCTAAAGCTGTGTGGAGAGAGCAATTTTAGGCTAA TGCTTTACCGTCGGTAGAAAATCTATATCTGGCACTTAGGGTATTTCTGC GGGTTACCTCGTAACTACAGTAGATCAATACTGATGGCTGTAGTGATGTC AACATATCTGCATGTATGCCTCATCAGTGCAACTTTTCATTTGCACGTGC TCTTGTGATACTTGATTTCGAATTGTCGATGAAATTCACGTGTTGGATGA TGGATGAATATAGTAAAAACCATGTATTCCGCGAAGGTGGAGCTCACGAG ATCCAGTGGTTTTACAGAGAAAGAGTCCTGTAGTGCAGCGTTGAAGAGAA AGCAAAGTGTGCCTCTGTAGCGCGCGGTTCTTAAGAACACGTTTAGAGAG GTAAAAAACACAAAACTGGTGTAATCGCTGCGCTGTGTGCGTGTATGATC AATTCATCGCAAGTCCGCAGCACTATGGCAGCAGAAGCGCCGCATTTGAT CGCTCTCTCGCTCGCTGAGTTCGGCTATTTTTTAGCCCGAGGTGTAGGGG GCGTGCTCAAACGATGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12505:4083..7301-

>mRNA_H-paniculata_contig12505.1572.1 ID=mRNA_H-paniculata_contig12505.1572.1|Name=mRNA_H-paniculata_contig12505.1572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1812bp|location=Sequence derived from alignment at H-paniculata_contig12505:4083..7301- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTATCCGGGCGTTTAACGTGGAGACTGCGACGATCAAAGATGTTGT
TCGAGGCAACGTGGTGCCTGGGAGAATGAGAATGCAATGGTGGAAGGATT
CCTTGGCAGATGGCTATCCGGGCGTTTAACGTGGAGACTGCGACGATCAA
AGATGTTGTTCGAGGCAACGTGGTGCCTGGGAGAATGAGAATGCAATGGT
GGAAGGATTCCTTGGCAGACATCTTTGCGGGGGATCCGCCGCCCCAACCC
GTGGCCTTGGCGCTGTCACACGTCGTCAGCAAGCAGCACATTGCAGCAGG
AGAGGGCGGCGGCGACTATAGAGGAGGGCTGACCCGTCGGTGGTTTGACC
GTGTCGTTGACGCGAGGATGGCAGACTTGGACTCGTCGCAACCACATACC
GTCAACGAGATGGAAACACATCTTTGCGGGGGATCCGCCGCCCCAACCCG
TGGCCTTGGCGCTGTCACACGTCGTCAGCAAGCAGCACATTGCAGCAGGA
GAGGGCGGCGGCGACTATAGAGGAGGGCTGACCCGTCGGTGGTTTGACCG
TGTCGTTGACGCGAGGATGGCAGACTTGGACTCGTCGCAACCACATACCG
TCAACGAGATGGAAACTTACGCGGAGTATACGGCGTCGTCCCTCTTGTAC
CTAAGCCTTGAGATCGCGGGTGTCCGGGCGTGGACAGAGGGACAAGAAGG
GACGAATGCTCCGATAGTGGGAATCAATGAAATTGGCCACGCGGCGAGTC
ACGTAGGAAAGGCAACCGGCATGTGCACACTTTTGCGATCAATTGCGCTG
CCGAAGGTGCCGCAGAGTGCCCTGGCGGAGGGTCCTATGGATGTGAGTTT
CTTACGCGGAGTATACGGCGTCGTCCCTCTTGTACCTAAGCCTTGAGATC
GCGGGTGTCCGGGCGTGGACAGAGGGACAAGAAGGGACGAATGCTCCGAT
AGTGGGAATCAATGAAATTGGCCACGCGGCGAGTCACGTAGGAAAGGCAA
CCGGCATGTGCACACTTTTGCGATCAATTGCGCTGCCGAAGGTGCCGCAG
AGTGCCCTGGCGGAGGGTCCTATGGATGTGAGTTTCGCCTGCATCCTGCC
GACGGAGGTAATGAGGAAGAACTCCCTTTCTCACGGGGTCCTTCAAAGGG
GTCCCAAGACTGAAAAAGAAGCACATGCACTCGCAGAGAGTGTGTTCGAT
GTAGCTACCGTCGCCAAGGGGCACATGGACCTGGCGGTTGAGGGTTTGGC
GGCCGCAAGTGACAAACGAGGCGGTCAGGGGTTGCCGGCCGGGGCCTTCG
CGGCTCTATTGCCGGGCGTTAGGGCTATGTGGTACTTGGAGAAGCTGGAG
GAGTGCCAGTTTGATGCGTTTGACGAGACATTGCGACCAAGAAGCCCGTT
GGCGTTTCAGCTTCGGTTGGCTAAAGCTGTGTGGAGAGAGCAATTTTAGG
CCTGCATCCTGCCGACGGAGGTAATGAGGAAGAACTCCCTTTCTCACGGG
GTCCTTCAAAGGGGTCCCAAGACTGAAAAAGAAGCACATGCACTCGCAGA
GAGTGTGTTCGATGTAGCTACCGTCGCCAAGGGGCACATGGACCTGGCGG
TTGAGGGTTTGGCGGCCGCAAGTGACAAACGAGGCGGTCAGGGGTTGCCG
GCCGGGGCCTTCGCGGCTCTATTGCCGGGCGTTAGGGCTATGTGGTACTT
GGAGAAGCTGGAGGAGTGCCAGTTTGATGCGTTTGACGAGACATTGCGAC
CAAGAAGCCCGTTGGCGTTTCAGCTTCGGTTGGCTAAAGCTGTGTGGAGA
GAGCAATTTTAG
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