mRNA_H-paniculata_contig1249.1559.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1249.1559.1
Unique NamemRNA_H-paniculata_contig1249.1559.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1249.1559.1 vs. uniprot
Match: D7G8P7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8P7_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 9.870e-43
Identity = 95/180 (52.78%), Postives = 121/180 (67.22%), Query Frame = 1 
Query:   19 NEDTVLIALLTALEDLHDIRTKMNSCVKQASGYAEAVGCEGNLGRNSVSVHDTREEYSAEVTINIACEGDEDEVPTRSDPRAIFTRNHTTD-GSTVSSTGIDGNLRQRGGAGMQQHNDAEESSMQSDSDVSSRGDSLNLFAGLVPPPLRKSKKSFKSAVDYAVEVANLINQITFLQGQLE 555
            +ED  L ALLTAL+DLH+IR +M++C+KQ  G+        ++GRNSVSV DTREEY+AEVTI I  +  E  +    + R++F+RN     GS V     DG+LRQRGG G   H + EES +Q D D   RGDS++LFA LVPPPLRKSKK+F S VDYAVE +NL ++I  LQ  LE
Sbjct:    2 DEDAALSALLTALDDLHNIRNEMHTCLKQ--GFLNMARARRSMGRNSVSVLDTREEYAAEVTIAIEEDTSEGRLQ---ESRSMFSRNRVEPAGSAVVIR--DGSLRQRGGGGA--HVEIEESLLQPDQDAPVRGDSMSLFATLVPPPLRKSKKNFTSVVDYAVEASNLAHRIIHLQKMLE 172
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BLAST of mRNA_H-paniculata_contig1249.1559.1 vs. uniprot
Match: A0A7S2BYK8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYK8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.520e-7
Identity = 45/185 (24.32%), Postives = 89/185 (48.11%), Query Frame = 1 
Query:   22 EDTVLIALLTALEDLHDIRTKMNSCVKQASGYAEAVGCEGNLGRNSVSVHDTREEYSAEVTINIACEGDEDEVPTRSDPRAIFTRNHTTDGSTVSSTGIDGNLRQRGGAGMQQHNDAEESSMQSDSDVSS--------RGDSLNLFAGLVPPPLRKSKKSFKSAVDYAVEVANLINQITFLQGQL 552
            ED  L+AL   ++ L+  + ++   +++  G+        ++GRN++S  + RE   A+V ++   E          D   ++ R+  + G+  S  G    +R+RG  G+    D +  S  +  + ++        + ++L LF GLVPPP+RK+K  F  AV++ +  AN+   I   + ++
Sbjct:   12 EDEALVALFEKVDGLYAEQQRIAKSMRK--GFLNITKARQSMGRNALSALNCRELVDAQVRVDATHE---------EDAGMLWERHRESPGAVASQNGA---VRRRGAGGLSGPIDEDTVSSHTPDEPAADDAVQGAAQKNTLMLFGGLVPPPMRKAKADFALAVEHCIAAANVAQSIALAEREI 182
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1249.1559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G8P7_ECTSI9.870e-4352.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2BYK8_9STRA3.520e-724.32Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1249contigH-paniculata_contig1249:13595..18793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size555
Cds size555
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1249.1559.1prot_H-paniculata_contig1249.1559.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1249 13595..18793 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928968.4990113-CDS-H-paniculata_contig1249:13594..136621622928968.4990113-CDS-H-paniculata_contig1249:13594..13662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1249 13595..13662 -
1691480685.655149-CDS-H-paniculata_contig1249:13594..136621691480685.655149-CDS-H-paniculata_contig1249:13594..13662Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1249 13595..13662 -
1622928968.5113966-CDS-H-paniculata_contig1249:13814..140891622928968.5113966-CDS-H-paniculata_contig1249:13814..14089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1249 13815..14089 -
1691480685.669226-CDS-H-paniculata_contig1249:13814..140891691480685.669226-CDS-H-paniculata_contig1249:13814..14089Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1249 13815..14089 -
1622928968.5240283-CDS-H-paniculata_contig1249:18449..185181622928968.5240283-CDS-H-paniculata_contig1249:18449..18518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1249 18450..18518 -
1691480685.6799374-CDS-H-paniculata_contig1249:18449..185181691480685.6799374-CDS-H-paniculata_contig1249:18449..18518Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1249 18450..18518 -
1622928968.5351064-CDS-H-paniculata_contig1249:18650..187931622928968.5351064-CDS-H-paniculata_contig1249:18650..18793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1249 18651..18793 -
1691480685.6915662-CDS-H-paniculata_contig1249:18650..187931691480685.6915662-CDS-H-paniculata_contig1249:18650..18793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1249 18651..18793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1249.1559.1

>prot_H-paniculata_contig1249.1559.1 ID=prot_H-paniculata_contig1249.1559.1|Name=mRNA_H-paniculata_contig1249.1559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp
MATSEPNEDTVLIALLTALEDLHDIRTKMNSCVKQASGYAEAVGCEGNLG
RNSVSVHDTREEYSAEVTINIACEGDEDEVPTRSDPRAIFTRNHTTDGST
VSSTGIDGNLRQRGGAGMQQHNDAEESSMQSDSDVSSRGDSLNLFAGLVP
PPLRKSKKSFKSAVDYAVEVANLINQITFLQGQLE
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mRNA from alignment at H-paniculata_contig1249:13595..18793-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1249.1559.1 ID=mRNA_H-paniculata_contig1249.1559.1|Name=mRNA_H-paniculata_contig1249.1559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5199bp|location=Sequence derived from alignment at H-paniculata_contig1249:13595..18793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACATCAGAGCCCAACGAAGATACAGTGCTGATCGCTTTATTAAC
GGCTCTTGAGGACTTGCACGACATCCGAACCAAGATGAACTCGTGCGTGA
AGCAGGCAAGCGGCTACGCAGAAGCAGTGGGCTGCGAGGGCAAGTAGATA
ATCGACTTTAGTCAAATGTCATTCTAATCAGTCAGTATTCCCATAACTTG
ATGCAACGATGGTCATAAAAACATCGCGTCTCTATATTTCTCAGGGATTC
TTCAACATGGCCAAAGCTAGAAGAGCTTGGGCCGGAACTCTGTCAGTGTA
CACGATACGCGTGAAGAGTACTCTGCTGAGGTGACGATAAACATGTCAGT
GCCAATATTTTTTTGTAACTTGTATAATTTTGCGCCGTGTCCTCTCAAAA
TAATATCGACATGATATCATGTGGTACATGATATCAGTGTGAATCCGCGC
CGGTCGAGATATGGTATGGAAAGTTCGATAGTACATATGCTCACATTATT
CTTTGTATTTCTTTTTTTCATGTTTTTTTCAGATAATGCAAACTTGCGAA
CCCGCGTGGTCATGGGGCCGTTTCCACCTCATGGTCCGAAAAAAAATCCT
GTTTGGACAACGCATCCTTCGATACCAAGGGTCATTTTTCCATGAGTTTA
TTGCCTAAATTCTTCTCCGAGCCCCTGCCAAACTATCAGTACACGTATCG
ACTATTGCCGTGGAAACTTCGGCATGATGTACCGATACGTCAACCCATAG
GGTTGTTTCAACTGGGAGATCCTGGTGTGGATTGTGGCCCTGTTTGCCGA
AATATTTTTTTCCATCTTCTGCAGTGATATGATCGGTATATGTTTTTGTC
CACGGCTTTGCGGTACGATCCGACTCGCACTGAAATTTATCTGTCGGATG
TGCGCACAGATCCCGCTCGTATTACAAATTTGTAGGTCGTGATATCAATG
CTGAAGTTATGTTCCGACCGTTTGGCGCGCAAAGTTGGAAAAAAGTTGAA
GAAAAAAGAATGGAGGAACGTCACTTTTACACCGACGAGCGCTTTTTCCA
AACAGGGCTTTTCCCTGAGAGATGCCCATAATTCGTGGCTGGTCGAGGAA
TAGACGAACAAAAAATCCGCTTAATTGTTTCTTGAGTCTTGTCTAGTGAA
ACTAGCCATTTGGGGGCAGTGGAGGTTTGTGGTAGTGACCGCTATAGAAG
GGTTCAGTCCAAAAGGTTACTGAAGAGAGGAGCCTGAAAACACTAAACCC
GCACATAGTTCCAAAACAACGCGCAAGAGCTCGGACGATAGACCTTGCTT
TGAAGGAACTCATTTTATAGTCGGGGAGCTCGAGTGATCCATGTCAAGTG
TCGCAGACGGTGTTGAATTCCTTTTTCACCTGTTGGCAACTCACCGCTGT
CGGGGCCTTGGTCCCGCTTGATCGCTATTTCGCACAATGCCGCATATGTT
CGTTTCCATTTTTTCACTGCAAACACTGTTTTATTTCTCGAAAAAATTGA
AGACTTGATATGAACGCGGCAAAATAGAGTTAGGTGCAAAAACGAAAAAG
CTCTCTGATTGGTCATGTATTCATCCAATCAAAAATGATGTTTTTTTTCT
GAAAAATCCACGTAGTAGTTTCTCGTTCATCGACAAGACATGGCCTTGTT
TTGTTCTGTAATGAAAAATATTGCCCCCAAACGGTATATATGGTATCGCA
GATACGGTATGTGTTATCGCGGTGTGGAATTCAATGGTGCTGACGAACGC
GAAATTAATGTGTACATGTTGCTGGCGCATTAAGTATCGTCTCTTGCAGC
GTGCATCGTGTTGGACCACTTTGATCGTCGTGCCAATAATGTAGTACCAC
ATTTTGCTGTACTATCAATACTTCTTGGGGATGACGTTAGCCACGGTGAG
AAGGTATCTCGCCCCAAAGACCGTGGGTGACATCAGCCTATGGTCAAGGT
TTTTTTACGTATCAAATTTTTTGCTCACTTCATTTTCACCAATCGGAAAA
CTGCGTGCCATTTCTCCCTCTCTCGGTGTCAGTCGATTGTCCGAACGAGA
GGATTGTATGCTTCTTTGGCAATATATAATGGCCGGACAAAAGGTTTATC
CAGGTAAATTGCGTTAAACCGTGCGTGTGGCATTATGCATTGCGCCGGCA
ATTATCTATGACATTTTTTTTATCTATATTTAAGAAATGACGTAATCGTT
TGCGGCGTGTTTTGCGTTTCATCAAATATATTGAGTAGAAAACGCAGACG
TCATCCAGTCAACATTTAATAATTCAAACTATCAAGTGACCTTCATCTCT
TGCCTATAATGCGTAACAACGTCAAAGTTCATCGACGGACTTGGTGCTGT
TTTTTCAACCTTGAGGTAATTCAAATCTGTCACACGCCGCACGCGCTTTA
CGCTTGTCTTGACTTCACCCTGTTTTGTTGCAAAGGTTAGGCGCGTAGTT
TGAAGCCTTGTTGTATCCTTTATGTGTCAACATTTTGACCTCTGCTCTCG
CACAGCGCACGTCTTCCATCACTTGTGGTACATATGGGCATAGTGTACGA
GTTGCATTTCATAGGGTTCGATGTTTTTGAAGCTCAGCATCACTGGGTAG
AGACGCCTTGATTACTTGAAGCACATGGACGTTGAGCTCGATGGTCCATA
ACTTCTGCGGCCAATATATTAACTGCAGCTGTACGCAGAACTATGTTAGT
ATGTGCTGCAGACAGCGATGCGGAGAGATAGTCGGATCATTGTAACTACT
CTTGGATTATGACAACTGTGCATCCTACGAGATAATATACCACACCGACA
CTCCCATTTATTTTATTTTTCAACCCTGTAGGGTAAGATGTAATGACCCG
TGCCAGCTATCGTTCAAAAGCTGATTTCAGAAGCTTCTCAGTTTGTCACG
TTGTTGGTGACGAGAAACGAGCGAAGTAAGTCATTTCATATTATACCGAA
ATATATGAACAGGCGTTTCAGGTTCAAAGAGTCAACTATTGACAATCTTT
GAGGGGTTAGTTGGAAAGCTCGTAACGAGAGCTTTCATCCAATATCCTTT
TCCCCCCGTAGGCGCCATTTCAGGGGAGAAACTAAAACATCCCTCAGCAT
AGAAGTTACCGACCCCACTTGGGCGCTCCCTCCACGCCCTTCTTTTTTAC
GAAAGTGAAGGATTTCATATCGTGTATGATGTTGAGATGTGGAGACTGCG
CAGGGCTGTGTTGGAAGCCTGATGCTTGATCCACCCCCTTGCTTGCTTGG
GTTAGGTTGCGCTGCGTGCCTTGGCCCGTGTGCGGGCTCGACCTCAACTT
CTTCATCGGAGGTCTCTTTCACACGATTTCGCCGATTAACAAAAGTTTTC
CCCAATTTTGCAACAGTGACCATTTTCGGAAAAACAAATATCAGATGCCA
TTGCTCAATAATTTTTATTCCAAGTTATTTTGGATCTGTGTGCAAGCTGA
AATTGTAGCCTTACGAATTATGTGCTCCAATTTACTCGAACAATTTAAAG
GCTTACGAGACTGAAGGTATAGCTTTTCTTCCAAATTGAGATGCAATCCC
AAACAGTGCTTTCCGTAACCTGAAGTCATGACCAGTGACGTTCATTTGGA
GGACCCGATGCCCCTCGATTGCGTTGGATTTGTTTTGGGGGTTTTCAATA
TTTTCGTACCCCCACAGCACTGTACGAAAGCACTCTTCATGCCCCGATTT
CGAGGGGGGAAATGAGACATTTTCATCACAAGAAAGTGCTTTCGTACAAG
GCTATGGGGGCACGGAAGTAGTGGAAAGCCCTAAAACAGTTGTAATGCGA
TCGAAGGTCATTGGGCCCTCAAAATGAACATTGCTGGTCAAGACTTTATG
TGAGGGGAAGCACTGTTTTTGGGTCGAATCTCATCTAAAAGTTGAACCTC
ATTTTGGAAGGCACTTTAACGGATACATATATGAATTGTATAAGATGCTT
TGTCCAGGGTGTGTGCAGAGTACGTTCAAAGCGGCGAAGGGTTCTGGGGT
TTTGTTTCACGACAGTGTTCCATTTTTCTGCCTTCTTCACAATTTTTTTT
TGCATTTCATAATGGATATTTTGATATGTTCAATCTAAGTTTCTTAGAGG
GCATCGTGAATCCCGAGGCTTTCACTGATGGCGCATTTCGATATAGATTT
TGCTCGTTATTATTTTGGACGTGTGATAAACCGAAGAAATATGAGACCCT
CCTCAAAATTGGAACAAGAACGGGGAAAATCGGCCATCCATGACAACTGA
GGTGGTCTCCATGCATCCACATCCAAACGTCATCACTTCCAAACTCTTGA
CTATAGCCTGGGAGTGGTCGGACCAAAGTTCTTCACTTGTCTTGATGAGC
TCCGCCTATTACTTCCACGTCCCGGTGGACCCATTTTTGTGTCGTTGATG
TGTATGTACCTGGGGTACACTTGCTTTTCTCCCTCTGTTGCACCTGATTA
TAGCATGTGTCGAAAAATGTATGTTTTTTATCGAATTCGATCATCACGCG
CATCGTTAGCCTCAAGGATATGAAGTAGTCACGGAAATAAGCTTTCGTCA
GCGCGTGGCTATATCTGCCTCTTGATATCACACTTATACGGAGTCAATTA
CGACGTTTCCATCCGGATTTGCAAAAGGGGGGTTATATACTATACGATAC
TCGTCAGTAAGACTGTAATCTTGAACGCGTAATATATGTATGTTCTGTGT
AAAGTGCTTGCGAAGGTGATGAAGATGAGGTGCCGACAAGATCTGATCCA
CGGGCTATCTTCACGAGAAATCACACAACGGATGGGAGTACTGTATCTAG
CACTGGGATTGATGGTAACCTTCGCCAACGCGGGGGAGCGGGAATGCAGC
AACACAACGATGCCGAGGAATCGTCCATGCAGTCAGACAGCGACGTGTCC
TCGCGCGGTGACTCACTCAACCTTTTCGCTGGATTGGTGCCACCGCCCTT
GCGCAAGTCGAAGAAGAGCTTTAAATCTGGTGAGAATTAGGTGAGAATTA
TGATAGGAAGAAACATTGACTTGCGACTGCCTCTTGATAATGCGCCTTCT
CGTCCCTATTTCGCTTCAACCACTCATACTGAATCCACCACTGCCGCCAA
CTACTGCCGATCCTCCTTGCGATTTTTTCAGCTGTGGACTACGCCGTGGA
AGTAGCAAATCTTATCAATCAGATTACCTTTCTGCAAGGGCAATTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1249:13595..18793-

>mRNA_H-paniculata_contig1249.1559.1 ID=mRNA_H-paniculata_contig1249.1559.1|Name=mRNA_H-paniculata_contig1249.1559.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig1249:13595..18793- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACATCAGAGCCCAACGAAGATACAGTGCTGATCGCTTTATTAAC
GGCTCTTGAGGACTTGCACGACATCCGAACCAAGATGAACTCGTGCGTGA
AGCAGGCAAGCGGCTACGCAGAAGCAGTGGGCTGCGAGGGCAAATGGCGA
CATCAGAGCCCAACGAAGATACAGTGCTGATCGCTTTATTAACGGCTCTT
GAGGACTTGCACGACATCCGAACCAAGATGAACTCGTGCGTGAAGCAGGC
AAGCGGCTACGCAGAAGCAGTGGGCTGCGAGGGCAACTTGGGCCGGAACT
CTGTCAGTGTACACGATACGCGTGAAGAGTACTCTGCTGAGGTGACGATA
AACATCTTGGGCCGGAACTCTGTCAGTGTACACGATACGCGTGAAGAGTA
CTCTGCTGAGGTGACGATAAACATTGCTTGCGAAGGTGATGAAGATGAGG
TGCCGACAAGATCTGATCCACGGGCTATCTTCACGAGAAATCACACAACG
GATGGGAGTACTGTATCTAGCACTGGGATTGATGGTAACCTTCGCCAACG
CGGGGGAGCGGGAATGCAGCAACACAACGATGCCGAGGAATCGTCCATGC
AGTCAGACAGCGACGTGTCCTCGCGCGGTGACTCACTCAACCTTTTCGCT
GGATTGGTGCCACCGCCCTTGCGCAAGTCGAAGAAGAGCTTTAAATCTGT
GCTTGCGAAGGTGATGAAGATGAGGTGCCGACAAGATCTGATCCACGGGC
TATCTTCACGAGAAATCACACAACGGATGGGAGTACTGTATCTAGCACTG
GGATTGATGGTAACCTTCGCCAACGCGGGGGAGCGGGAATGCAGCAACAC
AACGATGCCGAGGAATCGTCCATGCAGTCAGACAGCGACGTGTCCTCGCG
CGGTGACTCACTCAACCTTTTCGCTGGATTGGTGCCACCGCCCTTGCGCA
AGTCGAAGAAGAGCTTTAAATCTGCTGTGGACTACGCCGTGGAAGTAGCA
AATCTTATCAATCAGATTACCTTTCTGCAAGGGCAATTGGAGCTGTGGAC
TACGCCGTGGAAGTAGCAAATCTTATCAATCAGATTACCTTTCTGCAAGG
GCAATTGGAG
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