mRNA_H-paniculata_contig12485.1556.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12485.1556.1
Unique NamemRNA_H-paniculata_contig12485.1556.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12485.1556.1 vs. uniprot
Match: A0A7S2UYA2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UYA2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.460e-8
Identity = 32/76 (42.11%), Postives = 47/76 (61.84%), Query Frame = 1 
Query:    1 GAARSIEPFDLFIHPKRDPKKTHPYLVSYIGTKNLVDVGVRAGCERLVRVSGLSVGLPAFSPLSFFLNFFLSMTIR 228
            G +R  E  D++ HP +     HPY V+YIG K+LV    + G ++ VRV+GLSVG+ AFSP++  LN   S  ++
Sbjct:   25 GPSRVSEISDMWTHPSKIID--HPYNVNYIGIKDLVKECKKYGLKKFVRVTGLSVGMDAFSPIAVLLNTAASFAVK 98
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BLAST of mRNA_H-paniculata_contig12485.1556.1 vs. uniprot
Match: A0A7S0KFQ8_9CHLO (Hypothetical protein n=2 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0KFQ8_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 2.060e-8
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 1 
Query:   67 HPYLVSYIGTKNLVDVGVRAGCERLVRVSGLSVGLPAFSPLSFFLNFFLSMTIR 228
            HPY V++   + L +V  RAGCE+ +RV+G+SVG PAF  ++  LN  LSMTI+
Sbjct:   90 HPYWVNFRAVRTLAEVCERAGCEKFIRVTGMSVGYPAFDWIAVLLNVVLSMTIQ 143
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BLAST of mRNA_H-paniculata_contig12485.1556.1 vs. uniprot
Match: A0A1Y5I3B7_OSTTA (NAD(P)-bd_dom domain-containing protein n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5I3B7_OSTTA)

HSP 1 Score: 55.8 bits (133), Expect = 2.770e-7
Identity = 34/77 (44.16%), Postives = 43/77 (55.84%), Query Frame = 1 
Query:    1 GAARSIEPFDLFIHPK-RDPKKTHPYLVSYIGTKNLVDVGVRAGCERLVRVSGLSVGLPAFSPLSFFLNFFLSMTIR 228
            GA R     D+  +P  RD K  HP  V+Y+G   L  +   AG  + VRV+G SVG PAF  ++  LN  LSMTIR
Sbjct:  138 GAQRIGRVTDVVTNPSLRDAK--HPRFVNYLGAATLARLSSEAGARKFVRVTGASVGYPAFDFIAVLLNVVLSMTIR 212
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BLAST of mRNA_H-paniculata_contig12485.1556.1 vs. uniprot
Match: K8F365_9CHLO (NAD(P)-bd_dom domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F365_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 2.830e-7
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1 
Query:    1 GAARSIEPFDLFIHPKRDPKKTHPYLVSYIGTKNLVDVGVRAGCERLVRVSGLSVGLPAFSPLSFFLNFFLSMTIR 228
            GA R  +PFD   + +   ++ HP  V++ G + L       GCER VRV+G+SVG  AF  ++  LN  LSMTI+
Sbjct:  183 GAQRISKPFDWITNAENVDER-HPKSVNFWGVRKLALAAKEGGCERFVRVTGMSVGYSAFDFIAVLLNNVLSMTIK 257
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BLAST of mRNA_H-paniculata_contig12485.1556.1 vs. uniprot
Match: A0A8J6CAI5_DIALT (NAD(P)-bd_dom domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CAI5_DIALT)

HSP 1 Score: 52.8 bits (125), Expect = 3.320e-6
Identity = 27/63 (42.86%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:   43 PKRDPKKTHPYLVSYIGTKNLVDVGVRAG-CERLVRVSGLSVGLPAFSPLSFFLNFFLSMTIR 228
            P    + THPY+ +  G  NLV+    +G C ++VRV+GLSVG PA+SP++   N  LS++ R
Sbjct:  110 PAPPSESTHPYVANERGMSNLVEAAKASGSCGKIVRVTGLSVGRPAWSPVALLFNCLLSVSGR 172
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BLAST of mRNA_H-paniculata_contig12485.1556.1 vs. uniprot
Match: A4RUN2_OSTLU (NAD(P)-bd_dom domain-containing protein n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RUN2_OSTLU)

HSP 1 Score: 51.2 bits (121), Expect = 1.160e-5
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 1 
Query:   43 PKRDPKKTHPYLVSYIGTKNLVDVGVRAGCERLVRVSGLSVGLPAFSPLSFFLNFFLSMTIR 228
            P+R+    HP  V+Y   + L      AGC R VRV+G+SVG PAF  ++  LN  LSMTI+
Sbjct:   99 PEREA--AHPRNVNYGAVETLARCAADAGCARFVRVTGMSVGYPAFDWIAVLLNVVLSMTIQ 158
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12485.1556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2UYA2_9STRA1.460e-842.11Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0KFQ8_9CHLO2.060e-850.00Hypothetical protein n=2 Tax=Ostreococcus mediterr... [more]
A0A1Y5I3B7_OSTTA2.770e-744.16NAD(P)-bd_dom domain-containing protein n=2 Tax=Os... [more]
K8F365_9CHLO2.830e-740.79NAD(P)-bd_dom domain-containing protein n=1 Tax=Ba... [more]
A0A8J6CAI5_DIALT3.320e-642.86NAD(P)-bd_dom domain-containing protein n=2 Tax=Di... [more]
A4RUN2_OSTLU1.160e-545.16NAD(P)-bd_dom domain-containing protein n=1 Tax=Os... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12485contigH-paniculata_contig12485:366..596 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue7.9e-11
Seed eggNOG ortholog2880.D7G863
Hectar predicted targeting categoryother localisation
EggNOG free text desc.divinyl chlorophyllide a 8-vinyl-reductase activity
EggNOG OGsCOG0702@1,KOG1203@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size231
Cds size231
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.8741953-CDS-H-paniculata_contig12485:365..5961622928967.8741953-CDS-H-paniculata_contig12485:365..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12485 366..596 +
1691480685.549103-CDS-H-paniculata_contig12485:365..5961691480685.549103-CDS-H-paniculata_contig12485:365..596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12485 366..596 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12485.1556.1prot_H-paniculata_contig12485.1556.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12485 366..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12485.1556.1

>prot_H-paniculata_contig12485.1556.1 ID=prot_H-paniculata_contig12485.1556.1|Name=mRNA_H-paniculata_contig12485.1556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=77bp
GAARSIEPFDLFIHPKRDPKKTHPYLVSYIGTKNLVDVGVRAGCERLVRV
SGLSVGLPAFSPLSFFLNFFLSMTIR*
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mRNA from alignment at H-paniculata_contig12485:366..596+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12485.1556.1 ID=mRNA_H-paniculata_contig12485.1556.1|Name=mRNA_H-paniculata_contig12485.1556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=231bp|location=Sequence derived from alignment at H-paniculata_contig12485:366..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCGGCCCGTTCGATCGAGCCGTTTGACCTTTTCATACATCCTAAAAG
AGACCCAAAGAAGACCCACCCTTACCTAGTGTCTTACATAGGGACCAAGA
ACTTGGTGGACGTGGGCGTCAGGGCGGGCTGCGAGAGGTTGGTGCGTGTC
TCGGGGCTCTCGGTAGGGCTGCCCGCCTTCAGCCCACTCTCGTTTTTTCT
CAACTTCTTCCTGTCCATGACTATCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12485:366..596+

>mRNA_H-paniculata_contig12485.1556.1 ID=mRNA_H-paniculata_contig12485.1556.1|Name=mRNA_H-paniculata_contig12485.1556.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at H-paniculata_contig12485:366..596+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGCGGCCCGTTCGATCGAGCCGTTTGACCTTTTCATACATCCTAAAAG
AGACCCAAAGAAGACCCACCCTTACCTAGTGTCTTACATAGGGACCAAGA
ACTTGGTGGACGTGGGCGTCAGGGCGGGCTGCGAGAGGTTGGTGCGTGTC
TCGGGGCTCTCGGTAGGGCTGCCCGCCTTCAGCCCACTCTCGTTTTTTCT
CAACTTCTTCCTGTCCATGACTATCAGGTAAGGTGCGGCCCGTTCGATCG
AGCCGTTTGACCTTTTCATACATCCTAAAAGAGACCCAAAGAAGACCCAC
CCTTACCTAGTGTCTTACATAGGGACCAAGAACTTGGTGGACGTGGGCGT
CAGGGCGGGCTGCGAGAGGTTGGTGCGTGTCTCGGGGCTCTCGGTAGGGC
TGCCCGCCTTCAGCCCACTCTCGTTTTTTCTCAACTTCTTCCTGTCCATG
ACTATCAGGTAA
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