mRNA_H-paniculata_contig12478.1552.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12478.1552.1
Unique NamemRNA_H-paniculata_contig12478.1552.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12478.1552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12478contigH-paniculata_contig12478:1106..1569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size223
Cds size222
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.4607134-CDS-H-paniculata_contig12478:1105..11771622928967.4607134-CDS-H-paniculata_contig12478:1105..1177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12478 1106..1177 -
1691480685.3058383-CDS-H-paniculata_contig12478:1105..11771691480685.3058383-CDS-H-paniculata_contig12478:1105..1177Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12478 1106..1177 -
1622928967.4736924-CDS-H-paniculata_contig12478:1419..15691622928967.4736924-CDS-H-paniculata_contig12478:1419..1569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12478 1420..1569 -
1691480685.3202941-CDS-H-paniculata_contig12478:1419..15691691480685.3202941-CDS-H-paniculata_contig12478:1419..1569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12478 1420..1569 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12478.1552.1prot_H-paniculata_contig12478.1552.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12478 1106..1569 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12478.1552.1

>prot_H-paniculata_contig12478.1552.1 ID=prot_H-paniculata_contig12478.1552.1|Name=mRNA_H-paniculata_contig12478.1552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
MIKSEVADPESTQSTVYAVVLIAVHILLVLSIWWNAWVAAAAVITRPTAQ
DAVLGFEIINKRELGTIFGRPKDT
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mRNA from alignment at H-paniculata_contig12478:1106..1569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12478.1552.1 ID=mRNA_H-paniculata_contig12478.1552.1|Name=mRNA_H-paniculata_contig12478.1552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=464bp|location=Sequence derived from alignment at H-paniculata_contig12478:1106..1569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAAATCAGAAGTTGCCGACCCAGAGTCCACTCAGAGTACGGTCTA
CGCCGTGGTCCTAATTGCGGTTCACATCCTATTGGTCCTTTCCATTTGGT
GGAATGCGTGGGTAGCGGCTGCGGCGGTCATCACCCGCCCAACCGCACAG
GTGAGGCGACCTTGAATAGTTCAACGATCTTTTCTCCTGAAGACACGACA
ATTAAAACCATGTTGATTAGACAGACCTGGCTGGTGTAACGTTTATGAAT
CCCCTACACACCTCTTGCTGTCGATAGAGTTACTGTGAGATTGTTGTGTA
AACGAATTGCGTGAACAACATATAATGTTTTTTGTGGACTTGGCACTTTT
GTCTTGTTCGTTCCGTGCACTGTCTACTGCTGCTTGTCGTAGGATGCCGT
ATTGGGTTTCGAAATCATCAACAAACGAGAGCTAGGCACTATCTTTGGAC
GACCAAAGGACACG
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Coding sequence (CDS) from alignment at H-paniculata_contig12478:1106..1569-

>mRNA_H-paniculata_contig12478.1552.1 ID=mRNA_H-paniculata_contig12478.1552.1|Name=mRNA_H-paniculata_contig12478.1552.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig12478:1106..1569- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCAAATCAGAAGTTGCCGACCCAGAGTCCACTCAGAGTACGGTCTA
CGCCGTGGTCCTAATTGCGGTTCACATCCTATTGGTCCTTTCCATTTGGT
GGAATGCGTGGGTAGCGGCTGCGGCGGTCATCACCCGCCCAACCGCACAG
ATGATCAAATCAGAAGTTGCCGACCCAGAGTCCACTCAGAGTACGGTCTA
CGCCGTGGTCCTAATTGCGGTTCACATCCTATTGGTCCTTTCCATTTGGT
GGAATGCGTGGGTAGCGGCTGCGGCGGTCATCACCCGCCCAACCGCACAG
GATGCCGTATTGGGTTTCGAAATCATCAACAAACGAGAGCTAGGCACTAT
CTTTGGACGACCAAAGGACACGGATGCCGTATTGGGTTTCGAAATCATCA
ACAAACGAGAGCTAGGCACTATCTTTGGACGACCAAAGGACACG
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