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Homology
BLAST of mRNA_H-paniculata_contig12472.1551.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.920e-41 Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 2
Query: 5 ELFGLMDKVLGECSKWLELFTPQELENVLWALCRLEHRADDLVAAMALEAKARQQGLTALMQKSTEVEARDAAFYLGGFRHLLTAYRDIDFDGLRAEGRYRRGKRLLSRMFRER 346
EL GLMDK+LGECSKW+E+FTPQELE +LWA+CRLEHRADDLVA MA E K RQ+ L +L+++S ARDAAF+LG FRHLL YR +DFDG RA GRYRRGK ++SRMFRER
Sbjct: 968 ELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1081
BLAST of mRNA_H-paniculata_contig12472.1551.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI) HSP 1 Score: 167 bits (424), Expect = 2.020e-41 Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 2
Query: 5 ELFGLMDKVLGECSKWLELFTPQELENVLWALCRLEHRADDLVAAMALEAKARQQGLTALMQKSTEVEARDAAFYLGGFRHLLTAYRDIDFDGLRAEGRYRRGKRLLSRMFRER 346
EL GLMDK+LGECSKW+E+FTPQELE +LWA+CRLEHRADDLVA MA E K RQ+ L +L+++S ARDAAF+LG FRHLL YR +DFDG RA GRYRRGK ++SRMFRER
Sbjct: 1091 ELSGLMDKLLGECSKWIEMFTPQELETLLWAVCRLEHRADDLVADMAAEGKRRQEELPSLLKQSGPSAARDAAFHLGAFRHLLAKYRGVDFDGRRARGRYRRGKSMISRMFRER 1204
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-19_002960.1 |
| Exons | 3 |
| Model size | 1321 |
| Cds size | 330 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12472.1551.1 >prot_H-paniculata_contig12472.1551.1 ID=prot_H-paniculata_contig12472.1551.1|Name=mRNA_H-paniculata_contig12472.1551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MDKVLGECSKWLELFTPQELENVLWALCRLEHRADDLVAAMALEAKARQQ
GLTALMQKSTEVEARDAAFYLGGFRHLLTAYRDIDFDGLRAEGRYRRGKR
LLSRMFRER* back to topmRNA from alignment at H-paniculata_contig12472:3149..6683- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12472.1551.1 ID=mRNA_H-paniculata_contig12472.1551.1|Name=mRNA_H-paniculata_contig12472.1551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3535bp|location=Sequence derived from alignment at H-paniculata_contig12472:3149..6683- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGAGAGTTATTTGGTCTAATGGACAAGGTGCTGGGGGAATGCTCGAAGT
GGTTGGAGCTGTTTACGCCCCAGGTACAGTGATGAAAATAATGTACTGCT
ATATGTGTTGTGTCGTGCTTTGCACAATTTGATTCCTCGCTTTGTGGAGA
TGGGGGAGGGGGGGGGGGGCTATCCACCGTATCACGCTGTTTGGGGGGCG
AATAGTGCTCGCTACCCCTGACCACGTTAGATGTACGGTGGATAGCGCCC
CCCCCCCTCAATTCCTCTGTGGCACACCTCCCGGACAACTAGAAATGTTC
TGAGTCTTTGGGACGACAACTCGAAAGGGTTTGTTTGTCTGAGTTTTAGA
TATATGCTGGCGCCTGGAGTAAAGTGTCCAGCCCTGTTTATTCGTTTTAC
TCGTACGTAGATGGTCCGGGACACATTAACAATTGGGTTCATACTTGCAA
AAAAAAACAAAAAAACTCGAGGCAAGTACTACTGTAGTATTTGAATTTGT
TTTTCGTCGCCAAAGTGCAAAATTTGTCCTAGGGGTGAAAGATTGTCAAT
CTGAAAACGTAGCGAAAGACCAAACAACATGTTGTCCCTCCACGGGATAA
AATAATCTCAATCCATCGCCTCCCCGCAATAGCGCATAGTTGCGGCAGTG
TTGCTCTTTCTTGTTTGCACGAGGAAAAATCCTGATGTACAGGATGGAAT
CTGCCGCCCGATCGGGTCCCTACCTGACGAGTCTCTCCGTTGGTGTGTCT
GTCACTGCCTGTCCCGTCGTTGTGACCTCGTATCAGGAACTGGAGAATGT
ACTCTGGGCGCTGTGTAGACTGGAGCACCGTGCGGATGACCTCGTTGCGG
CGATGGCATTGGAGGCGAGTGGATAATGACAGAATGTTTATGGTGTCGAA
TGTGCAGACAAGGATACGGCGTTGTTGATGGAGGCGTGGAGAGAAGCATG
GTCGGGGGGCGAGGACATTTTTCCAGATTCTATTTATTATCGGTATTATT
GCGGTTTCTGTTACTATTACTATTACTTAAAAAATATTACTATTACCTTT
AAAATATCACTATTACTTTTTAAACATCATTATTACTTTTTAAATATCAC
TATTACTTCTAAATATCACTATTACTTTTTAAATATCACTATTACTTTTA
AATATCACTATTACTTTTAAATATCACTATTACCTTCAAATATCACTATT
ACCTTCAAATATCACTATTATTTCTTAATACCATTATTACTTTTAAATAT
CACTATATCTTGTAAATATCACTATTACTTGTAAATATCACTATTACTTT
TAAATGTCACTATAACTTGTAAATATCACTAGTACTTTTAATTATCACCA
TTACTTCTTAATACCACTAGTACTTTTAAATATCATTACTTTTAAATATC
ACTATTACTTTTAAAATATCACTATTACTTTTAAAATATCACTATTACCT
TCAAATATCACTATTATTTCTTAATACCACTATTACTTTTAAATATCACT
ATAACTTCTAAATATCACTATAACTTCTAAATATCACTATTACTTCTACA
TATCACTATTACTTCTTAATATCACTATTACTTTTAAATGTCACTATAAC
TTGTAAATATCACTAGTACTTTTAATTATCACTGTTACTTCTTAATACCA
CTGTTACTTTTAAATATCACTATAACTTGTAAATATCACTATTACCTTTA
AATATAACTATTAATTTCAAATATCACTATTACTTTTAAATATCCCTACT
ATTTTTAAGTAGGTATAGCCGGGGTTAGGGTCGTGCCCGTGCTGTCCTGT
TTCGTCCTCGTTCATACCCACTCACAACGAATGCAAAAAGTATCTCTCGC
AACTCTTCGTTGTATCTGAAAACATTCGTATATTTCCCTCCCCCAAGGGG
GGTAATCTTAAACGTTACTCTAATGTACCCACGTAATCACCTATTGAACT
CCTCAATCACCGCTTTCATCGGTTTGTTGAATCAATCACTCGGGAGTGTT
GTACCTCCAACTTTTTTTTGTTTTTTTTAACCCGCGGAAGATTGAGGCAA
AAACCTCGACCGATGCTTCCATACCGAAGTATTTCTACATTTCCTTTTAA
CAGAACAGAGTTATTTAGTCCTCTGCGGAGTAGGCGCCACCCCGGTTCGG
CCGAACCAAGTAGGCAGTGTGGGGGTTGCACCCAGTAAAAGACCTCTGAC
TAGACTTCCACTCATGCTCAGTTCACGAGCTACCCTACCCGTTCGGGCGT
AGGTAGGTCCGTGACCTCCAACTTGTTTGGTCGTTTTTGGCATGTCTTCG
ATTGTATTTTTGTACTCCCATGTTGTTCCACCACACTAAACAAATGTTGT
ATCTCTTTTATCTAGGCAAAAGCTCGGCAGCAAGGTTTGACAGCGCTCAT
GCAGAAGTCGACTGAGGTGGAGGCAAGGGACGCAGCTTTTTACCTGGGAG
GGTTTCGACATTTGTTGACGGCGTACCGAGATATCGACTTCGATGGGCTG
AGGGCTGAGGGTCGATATCGCAGGGGGAAAAGATTGCTGTCGAGAATGTT
TAGGGAGCGGTAGTTGCTGTGGGAACGAGGAGGGGTTACTTTGATATTTG
AACCTCTTTATGGTATTGTCGGTGACGAATCCGAGAGGTGCAATTGAAGA
AGTGTCTGGGCAGGTAATTTCATGAGTGTGCTGAAGAAGGAGTTTTAGCC
ATTCGACACTAATAATGTAGTAAAGGCAACTTGGAGAATGACTTATAGGG
TAGGTGGTCACTGTACGGTGGTAGCTAGATATCTTGAGTGTATCGCATCA
ATAATATATTATTGATTGGATCCAAAGTATTCCAGCTAGGGAGTGTGCAG
TACTATTGTAGATGAGAGAGACGTGTGGGATGGTGAGCTGTTTTTTTCTG
GTATTGGTGAGTGAACGTAAGACGCCCCCACCAGTTTTCTAGTGTTTGTA
GGCGTTTTGGTGCTTGTTTCTGATCAAACTAAATGGGTGTTGACGAGTTT
TTTTTATCGAGAGGTGTGATGCATACTTGTGAGCAATTTCTTATGTTGGT
GTAAATTACCTTGGAGGACAAAGGCGACAGATCAAGTTTTCTCTTGTTTC
ACGTCGGGGATTCATGCACACTGAAAATACTATCCTCGAGGCTATCCGAG
ATAACTCCAAAATTGTGCCGATTATAAGATATGATGACTGATAGCCGCAA
CGAATGCCGCGTAGGACGTGGGGCTCAATTGATTGGCGACATGAAGGGAT
ATGCACAGTGCAGTACCGGCAGTACCCCTTTCAAGTATATGTCCACTGTA
CCTGCTGCCTGCCCCCGTCTTACCGTTAGACTGTTGACGGTTGACGTGCA
TTGTGCTATTGCAGTAACTGTTTTCGGTCCCGCGATCGGCGAATGTTCAT
AACAAGAGACAGTCACCATAATTGAGATTAATCTTTTTCGTGAGGTTGAA
GCAATTTTTGATAATTTTATCGTCATACTAAATACCGCCCATAAATGGGT
CTTTATTCAGATTATTATACACTATATTGGACCTC back to topCoding sequence (CDS) from alignment at H-paniculata_contig12472:3149..6683- >mRNA_H-paniculata_contig12472.1551.1 ID=mRNA_H-paniculata_contig12472.1551.1|Name=mRNA_H-paniculata_contig12472.1551.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig12472:3149..6683- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACAAGGTGCTGGGGGAATGCTCGAAGTGGTTGGAGCTGTTTACGCC
CCAGATGGACAAGGTGCTGGGGGAATGCTCGAAGTGGTTGGAGCTGTTTA
CGCCCCAGGAACTGGAGAATGTACTCTGGGCGCTGTGTAGACTGGAGCAC
CGTGCGGATGACCTCGTTGCGGCGATGGCATTGGAGGAACTGGAGAATGT
ACTCTGGGCGCTGTGTAGACTGGAGCACCGTGCGGATGACCTCGTTGCGG
CGATGGCATTGGAGGCAAAAGCTCGGCAGCAAGGTTTGACAGCGCTCATG
CAGAAGTCGACTGAGGTGGAGGCAAGGGACGCAGCTTTTTACCTGGGAGG
GTTTCGACATTTGTTGACGGCGTACCGAGATATCGACTTCGATGGGCTGA
GGGCTGAGGGTCGATATCGCAGGGGGAAAAGATTGCTGTCGAGAATGTTT
AGGGAGCGGTAGGCAAAAGCTCGGCAGCAAGGTTTGACAGCGCTCATGCA
GAAGTCGACTGAGGTGGAGGCAAGGGACGCAGCTTTTTACCTGGGAGGGT
TTCGACATTTGTTGACGGCGTACCGAGATATCGACTTCGATGGGCTGAGG
GCTGAGGGTCGATATCGCAGGGGGAAAAGATTGCTGTCGAGAATGTTTAG
GGAGCGGTAG back to top
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