mRNA_H-paniculata_contig12471.1550.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12471.1550.1
Unique NamemRNA_H-paniculata_contig12471.1550.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 365 bits (938), Expect = 9.700e-122
Identity = 161/263 (61.22%), Postives = 192/263 (73.00%), Query Frame = 1
Query:    7 NMEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            ++ YCPHC QS+GPAA+R R             G   WPH +    GE   NGNY E+D+++ RHG+CGDP QT  EG NKY QENS YPVL T+AEG ++E+K+V+STYHWGH+E F+C+ADDLP GP+ +VTQ CFN+YPLDRA DD    PID  + GR+ +DPPCRA ETDQ    GA  GDV TAR+QLP G+TCERC +QM YYTGNSC H GY EFNPPSWPS CAP+K DWI    G CGDGD+YPEEFWNCAD+
Sbjct:   50 DINYCPHCFQSRGPAAIRARG------------GDQPWPHFN----GERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADV 296          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 2.410e-120
Identity = 171/336 (50.89%), Postives = 206/336 (61.31%), Query Frame = 1
Query:    1 FENMEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHW-----------------------------------------------------------------------GHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            + ++ +CPHC QS+GP+AVR R E  T+   L  YG G WPHL SY R E+  NGNYYE ++ISVRHG+CGDP QT+ EG N Y QENS YPV G ++EG ++E+K+V+STYHW                                                                       GHLEFFICNA+D+   P+G+VTQGCFN +PLDRA DDGDASPID +H+GRY++DPPCRA ETDQ    GA  GDV TARY+LP GLTC RC +QMVYYTGN+C HPGY+EF+P S P  CAP KEDW+    GMCG+   YPEEFWNCADI
Sbjct:   29 YSDINWCPHCFQSRGPSAVRERGEENTEEAVLAMYGRGEWPHLFSYERNEVHGNGNYYEPEEISVRHGICGDPEQTKAEGTNLYGQENSKYPVHGKYSEGGIIEIKIVVSTYHWVRELPELSAQGFICGIAYLAFLVLVAAFAVVVFVFVVEEGEWKSAPTLYAHRAYEAVPGKYRALDYVHGGSGHLEFFICNAEDM-SDPDGVVTQGCFNMHPLDRADDDGDASPIDPDHIGRYYLDPPCRAGETDQDTLPGAYPGDVATARYKLPSGLTCSRCILQMVYYTGNACKHPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADI 363          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 353 bits (905), Expect = 5.640e-119
Identity = 157/263 (59.70%), Postives = 190/263 (72.24%), Query Frame = 1
Query:    7 NMEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            ++ YCPHC QS+GPAAVR R             G   WPH +    GE   NGNY E+++++ RHG+CGDP QT  E  NKY QENS YPV  T+AEG ++E+K+V+STYHWGH+E F+CNA +LPGGP+  VTQ CFN++PLDRA DD    P D ++ GR+ +DPPCRA ETDQ+   GA   DV TAR++LP GL+CERC +QMVYYTGNSC H GY EFNPPSWPS CAP+K DWI    G CGDGD+YPEEFWNCADI
Sbjct:   53 DINYCPHCFQSRGPAAVRARG------------GDKPWPHFN----GERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANLPGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDVATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADI 299          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 351 bits (900), Expect = 2.140e-116
Identity = 156/263 (59.32%), Postives = 189/263 (71.86%), Query Frame = 1
Query:    7 NMEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            ++ YCPHC QS+GPAA+R R             G   WPH +    GE   NGNY E+D+++ RHG+CGDP QT  EG NKY QENS YPVL T+AEG ++E+K+V+STYHWGH+E F+C+ADDLP GP+ +VTQ CFN++PLDRA DD    PID  + GR+ +DPPCRA ETDQ    GA  GDV TAR+QLP G+TCERC +QM Y+  NSC H GY EFNPPSWP  CAP+K DWI    G CGDGD+YPEEFWNCAD+
Sbjct:   21 DINYCPHCFQSRGPAAIRARG------------GDQPWPHFN----GERAENGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSKYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEHPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELVPGAFPGDVATARFQLPQGVTCERCVVQMAYW--NSCKHQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADV 265          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 2.560e-116
Identity = 154/265 (58.11%), Postives = 186/265 (70.19%), Query Frame = 1
Query:    1 FENMEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            FE MEYCP C  ++GP  V+ R    TDP  L  YG G WP   +Y +GE+  NGNY E D+I+ RHG+CGDP Q + EG N Y+  N  +P+L T+ EG V+E+K+ M+ YHWGH+EFFICNAD++   P+GI  Q CFN YPL RA  D + SPID N+ GRY+VDP CR  ETDQ+KP GA+ G V+ A YQLP GLTC+RC +QM YYTGNSC H GYEEF P SWPS CAP K DWI LD  +CG+  SYPEEFW CAD 
Sbjct:   11 FERMEYCPSCYNARGPTYVKERGMVNTDPAVLAEYGDGEWPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMED-PDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQTKPEGAQDGYVIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADF 274          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 351 bits (900), Expect = 1.310e-115
Identity = 157/262 (59.92%), Postives = 187/262 (71.37%), Query Frame = 1
Query:   10 MEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            + +CPHC QS+GPAA+R R+            G   WPH     +G    NGNY E+D+++ RHG+CGDP QT  EGDNKY +EN  YPVLGT+AEG V+E+K+++STYHWGH+E F+C+  DLP G + IVTQ CFN YPLDRA DD    PID  + GR+ +DPPCRA ETDQ    GA  GDV TARYQLP G+ C+RC +QMVYYTGNSC H GY EFNP SWPS CAP+K DWI    G CGDGD+YPEEFWNCADI
Sbjct:   58 VNFCPHCYQSRGPAAIRERS------------GDKPWPHY----QGARAANGNYLESDEVAQRHGICGDPEQTAAEGDNKYGRENYNYPVLGTYAEGGVLEVKILVSTYHWGHVEAFLCDTADLPEGEDSIVTQSCFNDYPLDRAIDDEFNGPIDPEYKGRFILDPPCRASETDQDLVEGAYPGDVATARYQLPEGVVCDRCVVQMVYYTGNSCKHEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADI 303          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 355 bits (912), Expect = 4.200e-115
Identity = 159/263 (60.46%), Postives = 189/263 (71.86%), Query Frame = 1
Query:    7 NMEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            ++ YCPHC QS+GPAA+R R             G   WPH +    GE   NGNY E+++++ RHG+CGDP QT  E  NKY  ENS YPVL T+AEG ++E K+V+STYHWGH+E F+C+ADDLPGGP+  VTQ CFN++PLDR  DD   SPID ++ GR+ +DPPCRA ETDQ    GA  GDV TAR++LP GLTCERC +QMVYYTGNSC H GY EFNP SWPS CAP K DWI    G CGDGD+YPEEFWNCADI
Sbjct:   52 DINYCPHCFQSRGPAAIRARG------------GDKPWPHFN----GERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDLPGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDVATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADI 298          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 348 bits (893), Expect = 2.830e-110
Identity = 156/263 (59.32%), Postives = 188/263 (71.48%), Query Frame = 1
Query:    7 NMEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            N+ YCPHC QS+G AAVR R             G   WPH +    G+   NGNY E+++++ RHG+CGDP QT  EG N Y  ENS YPVL T+AEG ++E K+V+STYHWGH+E F+C+A+DLPGGP+  VTQ CFN++PLDR  DD   SPID ++ GR+ +DPPCRA ETDQ    GA  GDV TAR++LP G++CERC +QMVYYTGNSC H GY EFNP SWPS CAP K DWI    G CGDGD+YPEEFWNCADI
Sbjct:   52 NINYCPHCFQSRGAAAVRARG------------GDQPWPHFN----GDRAANGNYIESEEVAQRHGICGDPEQTAAEGSNLYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDANDLPGGPDSTVTQSCFNEHPLDRVDDDYFNSPIDPSNTGRFILDPPCRASETDQELLDGAFPGDVATARFKLPEGVSCERCVVQMVYYTGNSCKHQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADI 298          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 301 bits (771), Expect = 8.330e-97
Identity = 142/262 (54.20%), Postives = 174/262 (66.41%), Query Frame = 1
Query:   10 MEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLPNGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGDSYPEEFWNCADI 795
            +E+CPHC  ++GP  V+ RA    D   L+ YGGG       Y  GE   NGNY ET++I+ RHG+CGDP Q   EG N Y+  N  +  L +F  G V+EM +VM+ YHWGH EFF+CN DD+   P+G+ TQ CFN +PL RA DDGDASPID N+ GRY+VDP CR EET+QS  + +  G  +  RY LP  + CE C +QMVYYTGN+C H GYEEFNP SWPS CAPNK DWI LD  +CG    YPEEFW C+D 
Sbjct:   46 VEFCPHCYNARGPKYVKQRAYDNVDSATLDAYGGGE--EFPLYF-GEFADNGNYLETNEIAKRHGVCGDPEQNADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDD-PDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQS--SNSIEGYNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDF 300          
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 296 bits (757), Expect = 8.400e-96
Identity = 133/213 (62.44%), Postives = 159/213 (74.65%), Query Frame = 1
Query:  160 NGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVVEMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGDASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCERCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGM-CGDGDSYPEEFWNCADI 795
            NGNY ++D             +T  EG N+Y QENS YPVL T+AEG ++E+K+V++TYHWGH+E F+C+ADDLP GP+ +VTQ CFN+YPLDRA DD   SPID  + GR+ +DPPCRA ETDQ    GA  GDV TAR+QLP G+TCERC +QMVYYTGNSC H GY EFNPPSWPS CAP+K DWI    G  CGDGD+YPEEFWNCAD+
Sbjct:   49 NGNYIQSD-------------ETAAEGSNRYGQENSNYPVLETYAEGGILEVKIVVATYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNSPIDPLNRGRFILDPPCRASETDQELLPGAFAGDVATARFQLPQGVTCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADV 248          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12471.1550.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LD67_ECTSI9.700e-12261.22EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JI36_9PHAE2.410e-12050.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LM93_ECTSI5.640e-11959.70EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KD35_9PHAE2.140e-11659.32CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G4D7_ECTSI2.560e-11658.11EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMF4_ECTSI1.310e-11559.92EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D8LM92_ECTSI4.200e-11560.46EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KTY6_9PHAE2.830e-11059.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMS9_ECTSI8.330e-9754.20EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D7FP25_ECTSI8.400e-9662.44EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12471contigH-paniculata_contig12471:57..2549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score399.8
Seed ortholog evalue9.7e-109
Seed eggNOG ortholog2880.D7FSZ8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size795
Cds size786
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12471.1550.1prot_H-paniculata_contig12471.1550.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12471 66..2549 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.26873-UTR-H-paniculata_contig12471:56..651622928967.26873-UTR-H-paniculata_contig12471:56..65Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12471 57..65 +
1691480685.186142-UTR-H-paniculata_contig12471:56..651691480685.186142-UTR-H-paniculata_contig12471:56..65Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12471 57..65 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928967.28305-CDS-H-paniculata_contig12471:65..921622928967.28305-CDS-H-paniculata_contig12471:65..92Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 66..92 +
1691480685.2048337-CDS-H-paniculata_contig12471:65..921691480685.2048337-CDS-H-paniculata_contig12471:65..92Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 66..92 +
1622928967.293282-CDS-H-paniculata_contig12471:901..10901622928967.293282-CDS-H-paniculata_contig12471:901..1090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 902..1090 +
1691480685.2207067-CDS-H-paniculata_contig12471:901..10901691480685.2207067-CDS-H-paniculata_contig12471:901..1090Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 902..1090 +
1622928967.30495-CDS-H-paniculata_contig12471:1345..14621622928967.30495-CDS-H-paniculata_contig12471:1345..1462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 1346..1462 +
1691480685.2295115-CDS-H-paniculata_contig12471:1345..14621691480685.2295115-CDS-H-paniculata_contig12471:1345..1462Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 1346..1462 +
1622928967.3165908-CDS-H-paniculata_contig12471:1770..20621622928967.3165908-CDS-H-paniculata_contig12471:1770..2062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 1771..2062 +
1691480685.2407212-CDS-H-paniculata_contig12471:1770..20621691480685.2407212-CDS-H-paniculata_contig12471:1770..2062Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 1771..2062 +
1622928967.3275976-CDS-H-paniculata_contig12471:2388..25491622928967.3275976-CDS-H-paniculata_contig12471:2388..2549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 2389..2549 +
1691480685.2486966-CDS-H-paniculata_contig12471:2388..25491691480685.2486966-CDS-H-paniculata_contig12471:2388..2549Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12471 2389..2549 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12471.1550.1

>prot_H-paniculata_contig12471.1550.1 ID=prot_H-paniculata_contig12471.1550.1|Name=mRNA_H-paniculata_contig12471.1550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=262bp
MEYCPHCMQSKGPAAVRVRAEAMTDPTELETYGGGRWPHLDSYMRGELLP
NGNYYETDKISVRHGLCGDPGQTQLEGDNKYAQENSVYPVLGTFAEGSVV
EMKVVMSTYHWGHLEFFICNADDLPGGPNGIVTQGCFNKYPLDRAADDGD
ASPIDSNHLGRYFVDPPCRAEETDQSKPAGAETGDVVTARYQLPGGLTCE
RCTIQMVYYTGNSCHHPGYEEFNPPSWPSECAPNKEDWITLDPGMCGDGD
SYPEEFWNCADI
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mRNA from alignment at H-paniculata_contig12471:57..2549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12471.1550.1 ID=mRNA_H-paniculata_contig12471.1550.1|Name=mRNA_H-paniculata_contig12471.1550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2493bp|location=Sequence derived from alignment at H-paniculata_contig12471:57..2549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGAAAACATGGAGTATTGTCCACATTGCATGCAGGTAAGAGAGATGCT CTAAATAAATAGATTTAGAGTATTCGCGCGTGATTGCGAATGGACTGTAA ATCGAGAAAATTGATATACAAAAGTATGTTTCGAGTGTGTGTCTTTGTCC TTTCATATAAAATGTTGTGTTTTGGCAAGGGGCTCTCTCTAGAAAAGTAA TTACAGCACGTGTTGATAAGTTGAGGATTGAAACAAAAGGTGGGGGGAGA GGGGGGGGAGGGGTTAAGGACATGTTGACTCCAACAATTATCGTAAGGTG TTTTGACAGAACTGTATTGTCATACTCCGCTGCCCATGCTCTTTATGAAG GACACAGGTTGCACTGACACAGTGAGACCGAGATCACTATCATCGAAAGC ACAGGCTAGCGTGTCCCATTTCTTCAATGCTCCAGATGAAATCAATATTA ACATAAGTTTGTCAAGCTGACAACTTGCACGTTGCAACGCCGCGTTGAAC TCTTCGATTCGATTAGCAAAGTCTTCCAAAAGCACTCTCGAAACCTTTCC CTTTTGGTCAAAATTCAGGCCGGGTGATGGAGGTTCCACGGATGTCTTCC ATGAGAGGACCCCTTAATTTATATTTCTTTAGCCCGCGGTTAGGTAGCTC TAGCATTTAAGCGAATTTGTCGACAAAAAATCTGGACAAGGTTCATGTTA ACCGTGACCGTGTCCAGTGCTGTTCAGTACCGCGCTACTGGATTGGCTGT CACATTAAGTTCAGTAGATTCAATCCCCGCGAGATCAATTCACATCTCTC CACGCGTCTCAAGACCCCCCCCCCGCCCCGCGTTGATCCCTGCAGTCCAA AGGCCCCGCTGCTGTGCGCGTCCGCGCCGAGGCCATGACTGACCCGACTG AGCTGGAGACGTACGGCGGCGGCCGCTGGCCCCACCTCGACTCCTACATG AGGGGGGAGCTGTTGCCAAATGGAAACTACTACGAGACCGATAAGATCTC TGTTCGCCATGGTCTGTGCGGTGACCCCGGACAGGTGAGATAAGTTCGAG TGCAGAAGGGACGTGCGTTTGCGCGTATTGACGAATACATTATGGCTCGA TCGCTGTATTTTTTTGCATTTTCTCGACGCAATGAACCATGATACGCGGT TTTTAGAGGGATAACAATCGATTACAGGAATGGACCCATGGTCAGCACTG GGTGGCATTTCTCGGCGACTCTTAGCATTGACCGTGTCGCGGCCCTCCTT GCCCCGCCCCGGCACTTTATCTAACCCGAAATGCAATAGACGCAACTGGA AGGCGACAACAAGTACGCACAGGAAAACAGCGTGTACCCCGTGCTCGGGA CCTTCGCAGAGGGCTCCGTGGTCGAGATGAAGGTCGTCATGTCCACGTAC CACTGGGTGAGAAAGGCCGCTATCTGAACACTCGGGCCTAGAATACCCCG CGTTCGTGCGTTGTTGTTGGGGATGGCGTCGGTTAGATGGGTTACCTCTG ATCATGGCTTGGCCCGCACGTGGATGTCGTATTGGTTGTGCTGTTGCTAG AAGGGGATACCACTAACTTGTGTCACGTCTCAAGTAGGTAGCTCCTAACC CTCGACAGTGTTAGCCCTACGGGGACCACGCACATAGAGCACAACATTCA AGTAACTACCCCACGTCTCAGCTGAAATATCTTGCCCCCCTATCCCCCAC TCACTTCACGATAGGGTCACCTGGAGTTCTTCATCTGTAACGCCGACGAC CTCCCCGGAGGGCCAAATGGTATCGTCACCCAGGGCTGTTTCAACAAATA CCCCCTCGACAGGGCGGCCGACGATGGCGACGCTAGCCCCATCGACTCTA ACCACCTTGGCCGATATTTCGTGGATCCTCCGTGCCGCGCCGAAGAAACC GACCAGTCTAAGCCTGCTGGTGCCGAGACGGGAGACGTTGTGACGGCGCG CTACCAGCTACCTGGGGGTCTAACTTGCGAACGATGCACCATCCAGATGG TTTACTGTGAGTTGTTCAAAGCGATTTGTGTTCCGTTAGGATTTGCGTGG TTTGTTCCGCGTTTTTTGGGGTGTAGCAAAAGGTTAACGTTAGGGCGGGG TGTACAGGCGGGATCCATCGGGGTTTGCAGCCAACGTGAGCTTGCATGGC GGGAGTTCGCCAGGATTCGAACATTCAGATCCTCTTCCTCTCCTTCCAAA AGAACCATAACTGCGCACATATTCATTAAATCATTATTATAGATCGATCC GAAACACGGAGAACTAGTAATTCATGCTATTCACCATACTCATCGCTGGC CTCCCACCCATCTGCCTCTTGCTCAACGACAGACACCGGAAACTCGTGCC ATCACCCGGGGTACGAAGAGTTCAACCCCCCCTCATGGCCCAGCGAATGC GCGCCCAACAAGGAGGACTGGATTACCCTCGACCCCGGTATGTGCGGTGA TGGCGACAGCTACCCCGAAGAGTTCTGGAACTGCGCCGACATC
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Coding sequence (CDS) from alignment at H-paniculata_contig12471:57..2549+

>mRNA_H-paniculata_contig12471.1550.1 ID=mRNA_H-paniculata_contig12471.1550.1|Name=mRNA_H-paniculata_contig12471.1550.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1572bp|location=Sequence derived from alignment at H-paniculata_contig12471:57..2549+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGTATTGTCCACATTGCATGCAGATGGAGTATTGTCCACATTGCAT
GCAGTCCAAAGGCCCCGCTGCTGTGCGCGTCCGCGCCGAGGCCATGACTG
ACCCGACTGAGCTGGAGACGTACGGCGGCGGCCGCTGGCCCCACCTCGAC
TCCTACATGAGGGGGGAGCTGTTGCCAAATGGAAACTACTACGAGACCGA
TAAGATCTCTGTTCGCCATGGTCTGTGCGGTGACCCCGGACAGTCCAAAG
GCCCCGCTGCTGTGCGCGTCCGCGCCGAGGCCATGACTGACCCGACTGAG
CTGGAGACGTACGGCGGCGGCCGCTGGCCCCACCTCGACTCCTACATGAG
GGGGGAGCTGTTGCCAAATGGAAACTACTACGAGACCGATAAGATCTCTG
TTCGCCATGGTCTGTGCGGTGACCCCGGACAGACGCAACTGGAAGGCGAC
AACAAGTACGCACAGGAAAACAGCGTGTACCCCGTGCTCGGGACCTTCGC
AGAGGGCTCCGTGGTCGAGATGAAGGTCGTCATGTCCACGTACCACTGGA
CGCAACTGGAAGGCGACAACAAGTACGCACAGGAAAACAGCGTGTACCCC
GTGCTCGGGACCTTCGCAGAGGGCTCCGTGGTCGAGATGAAGGTCGTCAT
GTCCACGTACCACTGGGGTCACCTGGAGTTCTTCATCTGTAACGCCGACG
ACCTCCCCGGAGGGCCAAATGGTATCGTCACCCAGGGCTGTTTCAACAAA
TACCCCCTCGACAGGGCGGCCGACGATGGCGACGCTAGCCCCATCGACTC
TAACCACCTTGGCCGATATTTCGTGGATCCTCCGTGCCGCGCCGAAGAAA
CCGACCAGTCTAAGCCTGCTGGTGCCGAGACGGGAGACGTTGTGACGGCG
CGCTACCAGCTACCTGGGGGTCTAACTTGCGAACGATGCACCATCCAGAT
GGTTTACTGGTCACCTGGAGTTCTTCATCTGTAACGCCGACGACCTCCCC
GGAGGGCCAAATGGTATCGTCACCCAGGGCTGTTTCAACAAATACCCCCT
CGACAGGGCGGCCGACGATGGCGACGCTAGCCCCATCGACTCTAACCACC
TTGGCCGATATTTCGTGGATCCTCCGTGCCGCGCCGAAGAAACCGACCAG
TCTAAGCCTGCTGGTGCCGAGACGGGAGACGTTGTGACGGCGCGCTACCA
GCTACCTGGGGGTCTAACTTGCGAACGATGCACCATCCAGATGGTTTACT
ACACCGGAAACTCGTGCCATCACCCGGGGTACGAAGAGTTCAACCCCCCC
TCATGGCCCAGCGAATGCGCGCCCAACAAGGAGGACTGGATTACCCTCGA
CCCCGGTATGTGCGGTGATGGCGACAGCTACCCCGAAGAGTTCTGGAACT
GCGCCGACATCACACCGGAAACTCGTGCCATCACCCGGGGTACGAAGAGT
TCAACCCCCCCTCATGGCCCAGCGAATGCGCGCCCAACAAGGAGGACTGG
ATTACCCTCGACCCCGGTATGTGCGGTGATGGCGACAGCTACCCCGAAGA
GTTCTGGAACTGCGCCGACATC
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