mRNA_H-paniculata_contig12467.1546.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12467.1546.1
Unique NamemRNA_H-paniculata_contig12467.1546.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5KA02_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA02_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 2.940e-28
Identity = 61/106 (57.55%), Postives = 74/106 (69.81%), Query Frame = 1
Query:    1 MATTAEGHFVDVFQTPQTLGTGSCLVTTVLWLSIGRLLGLHCVNGARPCKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFSR 318
            MA  AEG FVDV   PQT G GS LV T LWL++ RL  +    G R    KRLHLQ+DNCVGENKNNI++ F+  L+  G+I   +V F++VGHTHIKIDQ+FSR
Sbjct:  101 MAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSAMGTKPGQR-FYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 205          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5KK38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK38_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 8.020e-27
Identity = 60/106 (56.60%), Postives = 72/106 (67.92%), Query Frame = 1
Query:    1 MATTAEGHFVDVFQTPQTLGTGSCLVTTVLWLSIGRLLGLHCVNGARPCKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFSR 318
            MA  AEG FVDV   PQT G GS LV T LWL++ RL  +    G R    KRLHLQ+DNCVGENKNNI+M F+  L+  G+I   +V F++VGHTH K DQ+FSR
Sbjct:  216 MAVQAEGAFVDVHFVPQTTGGGSNLVCTALWLALKRLSEMWNKPGER-FHIKRLHLQLDNCVGENKNNIVMAFIGGLVAAGVIGSAEVCFLIVGHTHTKTDQVFSR 320          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5JUU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUU1_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.420e-23
Identity = 51/108 (47.22%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 MATTAEGHFVDVFQTPQTLGTGSCLVTTVLWLSIGRLLGLHCVNGARP--CKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFSR 318
            MA   EG FV+V+ TPQ LG G  L  T   L+I R++  +  +   P  C  +  H QVDNCV ENKNN  +G+  +L+   ++ VV+++FMMVGHTH KIDQ+FSR
Sbjct:  165 MAVHIEGQFVEVYFTPQYLGGGCNLACTAAHLAITRIIDKYHDSPPHPSGCIIQHAHWQVDNCVSENKNNFFLGYAGLLVAADVVRVVEIHFMMVGHTHTKIDQVFSR 272          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5KN27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN27_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 6.530e-22
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   64 GSCLVTTVLWLSIGRLLGLHCVNGARPCKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFSR 318
            GS LV T LWL++ RL  +    G R    KRLHLQ+DNCVGENKNNI++ F+  L+  G+I   +V F++VGHTHIKIDQ+FSR
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQR-FYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5KAY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY2_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 7.710e-21
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   64 GSCLVTTVLWLSIGRLLGLHCVNGARPCKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFSR 318
            GS LV T LWL++ RL  +    G R    KRLHLQ+DNCVGENKNNI++ F+  L+  G+I   +V F++VGHTHIKIDQ+FSR
Sbjct:   10 GSNLVCTALWLALKRLSAMWTKPGQR-FYIKRLHLQLDNCVGENKNNIVLAFIGGLVAAGVIGSAEVCFLIVGHTHIKIDQVFSR 93          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5JAR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAR9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.810e-19
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1
Query:   64 GSCLVTTVLWLSIGRLLGLHCVNGARPCKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFSR 318
            GS L  T LWL++ RL  +    G R    KR HLQ+DNCVGENKNNI+M F+  L+  G+I   +V F+++GHTHIKIDQ+FSR
Sbjct:   10 GSNLECTTLWLALKRLSAMWTKPGER-FHIKRRHLQLDNCVGENKNNIVMAFIGGLVAAGVIGFAEVCFLILGHTHIKIDQVFSR 93          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5KUA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA0_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 2.350e-17
Identity = 38/62 (61.29%), Postives = 47/62 (75.81%), Query Frame = 1
Query:  133 GARPCKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFSR 318
            G RP  + R  +QVDNCV ENKN+I++G+L  L+  GII  V+V FM VGHTHIKIDQ+FSR
Sbjct:    6 GKRPYIY-RFTIQVDNCVSENKNHIVIGYLGSLVAQGIIGEVEVQFMPVGHTHIKIDQVFSR 66          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5JTH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTH9_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 6.360e-17
Identity = 45/91 (49.45%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   46 PQTLGTGSCLVTTVLWLSIGRLLGLHCVNGARPCKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFSR 318
            P  L  GS LV T LWL++ RL  +    G R    KRLHLQ+ NCVGE KNNI++ F+  L+  G++   +V F++VGHT IKID +FSR
Sbjct:  278 PALLCGGSNLVCTALWLALKRLSAMWAKPGQR-FYIKRLHLQLHNCVGEKKNNIVLAFIGGLVAAGVVVSAEVCFLIVGHTLIKIDHVFSR 367          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5KL03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL03_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.160e-16
Identity = 50/106 (47.17%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   19 GHFVDVFQTPQTLGTGSCLVTTVLW-------LSIGRLLGLHCVNGARPCKFKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFS 315
            G  ++VF  PQ LGTG+ LV T L+       LS G  LG              + +QVDN V ENKNN +MG LA ++  GI+  V + FMMVGHTHI+IDQIFS
Sbjct:  174 GVVMNVFFAPQILGTGTNLVATALYYQFMELTLSWGHTLG-------------DVTVQVDNTVSENKNNYLMGILAAMVGRGIMRTVTLCFMMVGHTHIQIDQIFS 266          
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Match: A0A6H5JJG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.450e-15
Identity = 46/103 (44.66%), Postives = 61/103 (59.22%), Query Frame = 1
Query:   19 GHFVDVFQTPQTLGTGSCLVTTVLWLSIGRLLGLHCVNGARPCKFKR----LHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKIDQIFS 315
            G  + VF  PQ LGTGS +V T L+     L            ++K     + +Q+DN V ENKNN +MGFLA L+  G++  V + FMMVGHTHI+IDQ+FS
Sbjct:  444 GIMMQVFMIPQILGTGSNMVCTTLFTLFMEL----------TLQWKHSLGDVFIQMDNTVSENKNNFIMGFLAALVGRGVMRSVTLCFMMVGHTHIQIDQVFS 536          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12467.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KA02_9PHAE2.940e-2857.55Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KK38_9PHAE8.020e-2756.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUU1_9PHAE5.420e-2347.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KN27_9PHAE6.530e-2256.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAY2_9PHAE7.710e-2156.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAR9_9PHAE1.810e-1954.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUA0_9PHAE2.350e-1761.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTH9_9PHAE6.360e-1749.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KL03_9PHAE4.160e-1647.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJG9_9PHAE1.450e-1544.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12467contigH-paniculata_contig12467:5164..6009 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.8621466-CDS-H-paniculata_contig12467:5163..54201622928965.8621466-CDS-H-paniculata_contig12467:5163..5420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12467 5164..5420 -
1691480684.8421407-CDS-H-paniculata_contig12467:5163..54201691480684.8421407-CDS-H-paniculata_contig12467:5163..5420Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12467 5164..5420 -
1622928965.9095035-CDS-H-paniculata_contig12467:5945..60091622928965.9095035-CDS-H-paniculata_contig12467:5945..6009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12467 5946..6009 -
1691480684.8521798-CDS-H-paniculata_contig12467:5945..60091691480684.8521798-CDS-H-paniculata_contig12467:5945..6009Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12467 5946..6009 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12467.1546.1prot_H-paniculata_contig12467.1546.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12467 5164..6009 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12467.1546.1

>prot_H-paniculata_contig12467.1546.1 ID=prot_H-paniculata_contig12467.1546.1|Name=mRNA_H-paniculata_contig12467.1546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=107bp
MATTAEGHFVDVFQTPQTLGTGSCLVTTVLWLSIGRLLGLHCVNGARPCK
FKRLHLQVDNCVGENKNNIMMGFLAMLMWNGIIDVVDVNFMMVGHTHIKI
DQIFSR*
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mRNA from alignment at H-paniculata_contig12467:5164..6009-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12467.1546.1 ID=mRNA_H-paniculata_contig12467.1546.1|Name=mRNA_H-paniculata_contig12467.1546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=846bp|location=Sequence derived from alignment at H-paniculata_contig12467:5164..6009- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACTACTGCTGAAGGACACTTTGTGGACGTGTTTCAGACGCCACA GACGCTTGGTACCGGTGAGCGATTTAAGCGTGTTTGAAGATTCAGTATGT TGGCATGTCATCAACGAGAAGTGGGGCAACCTCCGATTGCAGTAGCTCTT TTCGCTATGCTTCGTGTGGCGGACATGCATCGGTCTACGATATCTCCGAC ACAGCAAATACGTAAAAAACCATGAAATGACGGTAGTTGCACAGAGCTAG CAGCACAGGCAACAGGCCTTTGCTATGCCAATATTGAGAGGTTCAACCTG TCAATACTATATTGCTGTTGCATCCTCTTGTAGCAATTCTTAGCGTGGTA TGTTGTCTGAAGGCAAATAGTATAATGTTGCAACGATCTAGTGTGTAGGT GCACATGTTTTATTATTGTGGTATGCGGGTAGCGCCAGAGGACACAGTAC CACTTAAAGCAGGATAAATACGCAGACGACTTCTGCCGCTTGAGAAACAG CCAAACACACTGCTAACAGACGGGCGATCGCCCCGATACAATCAGCCATC TGACGACTGTTGACCTGTCAAACTCTCTCACTGATACAGGAAGTTGCCTT GTGACGACAGTATTGTGGCTCAGCATCGGGCGCCTTTTGGGGTTGCACTG TGTGAATGGAGCAAGGCCTTGCAAATTCAAACGTTTGCATCTGCAGGTAG ACAACTGCGTCGGGGAAAACAAGAACAACATCATGATGGGGTTCCTTGCA ATGCTCATGTGGAACGGAATCATTGACGTGGTGGATGTCAACTTCATGAT GGTTGGGCACACCCACATCAAAATTGACCAGATCTTCTCCAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12467:5164..6009-

>mRNA_H-paniculata_contig12467.1546.1 ID=mRNA_H-paniculata_contig12467.1546.1|Name=mRNA_H-paniculata_contig12467.1546.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=642bp|location=Sequence derived from alignment at H-paniculata_contig12467:5164..6009- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTACTACTGCTGAAGGACACTTTGTGGACGTGTTTCAGACGCCACA
GACGCTTGGTACCGATGGCTACTACTGCTGAAGGACACTTTGTGGACGTG
TTTCAGACGCCACAGACGCTTGGTACCGGAAGTTGCCTTGTGACGACAGT
ATTGTGGCTCAGCATCGGGCGCCTTTTGGGGTTGCACTGTGTGAATGGAG
CAAGGCCTTGCAAATTCAAACGTTTGCATCTGCAGGTAGACAACTGCGTC
GGGGAAAACAAGAACAACATCATGATGGGGTTCCTTGCAATGCTCATGTG
GAACGGAATCATTGACGTGGTGGATGTCAACTTCATGATGGTTGGGCACA
CCCACATCAAAATTGACCAGATCTTCTCCAGGTAAGAAGTTGCCTTGTGA
CGACAGTATTGTGGCTCAGCATCGGGCGCCTTTTGGGGTTGCACTGTGTG
AATGGAGCAAGGCCTTGCAAATTCAAACGTTTGCATCTGCAGGTAGACAA
CTGCGTCGGGGAAAACAAGAACAACATCATGATGGGGTTCCTTGCAATGC
TCATGTGGAACGGAATCATTGACGTGGTGGATGTCAACTTCATGATGGTT
GGGCACACCCACATCAAAATTGACCAGATCTTCTCCAGGTAA
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