mRNA_H-paniculata_contig12465.1545.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12465.1545.1
Unique NamemRNA_H-paniculata_contig12465.1545.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12465.1545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12465contigH-paniculata_contig12465:766..1989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size294
Cds size174
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12465.1545.1prot_H-paniculata_contig12465.1545.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12465 834..1937 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.6087918-UTR-H-paniculata_contig12465:765..8331622928965.6087918-UTR-H-paniculata_contig12465:765..833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12465 766..833 -
1691480684.8019917-UTR-H-paniculata_contig12465:765..8331691480684.8019917-UTR-H-paniculata_contig12465:765..833Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12465 766..833 -
1622928965.6426709-UTR-H-paniculata_contig12465:1937..19891622928965.6426709-UTR-H-paniculata_contig12465:1937..1989Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12465 1938..1989 -
1691480684.83343-UTR-H-paniculata_contig12465:1937..19891691480684.83343-UTR-H-paniculata_contig12465:1937..1989Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12465 1938..1989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.623041-CDS-H-paniculata_contig12465:833..9281622928965.623041-CDS-H-paniculata_contig12465:833..928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12465 834..928 -
1691480684.8158-CDS-H-paniculata_contig12465:833..9281691480684.8158-CDS-H-paniculata_contig12465:833..928Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12465 834..928 -
1622928965.6329253-CDS-H-paniculata_contig12465:1858..19371622928965.6329253-CDS-H-paniculata_contig12465:1858..1937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12465 1859..1937 -
1691480684.8246264-CDS-H-paniculata_contig12465:1858..19371691480684.8246264-CDS-H-paniculata_contig12465:1858..1937Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12465 1859..1937 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12465.1545.1

>prot_H-paniculata_contig12465.1545.1 ID=prot_H-paniculata_contig12465.1545.1|Name=mRNA_H-paniculata_contig12465.1545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=58bp
MSHSDRLIEGWGRKLDERQETRHHPVDQARKHYLRHQCGLRHEEGSSSLD
DSTLYHA*
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mRNA from alignment at H-paniculata_contig12465:766..1989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12465.1545.1 ID=mRNA_H-paniculata_contig12465.1545.1|Name=mRNA_H-paniculata_contig12465.1545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig12465:766..1989- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGATGCCTCTACAACTCCCCAAGCGAGGCGTGCGCACCAGATAGACGTGG
GGATGTCTCACTCCGACCGTTTGATTGAAGGTTGGGGCAGGAAGCTAGAC
GAGCGTCAAGAAACCAGGCATCATCCTGTAGGCGAGACTCGAATTCCAGC
GATGCAGCAGCGCCCTTGTGGTGCTGCAGGCTACCTACCCATTACTTTGC
ACCGACTGAATTGGGTTCGCCCCATAACGGCACTGAACGATTACCCAAGT
CATGGGTCATGTCGAAGGCCATATGTGACCATTACGAAATTTGAATTTTG
GATCAAATCTAATGGAGTCAACATCCACGTGGATGTGAAGATCTCCTCAT
GCAGGTTTGGCGGCGTAGATGATGATCTGAATCCTGGGCAATGTAGAGAA
GAATATTTGGACTCACAAACTGTCTGTACCGATGTGTAGTTCTGGCAGAA
CACAGGTGCTCTCGATAATTGGCTCCATGTTGCCTCTATTGTCATACTCT
ACAAACTTTGAGCCCGAGACGAATGCCGGCGTTTTATCCAATTCAAATGG
TCAGTGATCAGATGGGTCGCTGTCAGTGTGTCAAACATGGAGAGCGCTTG
CCTAGTTTTGGATTAAGAGATCGTAATTTTCCTACGGGAAAAAAAGGGCG
AGAAATATCGTTTTCTTAGGGGAAACTCGTTACATCTCTCTTATCATTAT
CGACTTCATCCTGCGCAAAAACCACTGTCGTGTCACAACACGGTCACCCT
CCACCCCTCCCGCCCCATCTTGTGATACGCGAAATCTCACAGTCCCGTGT
CACAAAATGTCACATCCCAGACCTCTAGGCCCCAGGAGTCAAAGGGTTCA
AAGGGTTAATGGGCGAAAACAAATGGAGATTGAAATTGAAATTGAAATCA
AATTTAGAAACAATGTGTCAAACCACACTTCACAACAGTACTAACCACAC
GCAGCAAAACACACACGGCCAAAATAATTCATGACTGTGTTGGTTGATTA
TTCCTTTTTTTAACGCCCGCTTACACGCTCGTCCATCCCCTCGACTCATG
TACTGGGCCAGACCAAGCACGAAAGCATTATCTGAGGCACCAATGTGGTC
TCCGGCACGAAGAAGGGTCTAGCTCATTGGATGACAGTACACTTTACCAC
GCATGATGCGGCCGACCGTCCACTTCTTGCGGGAGAGGAAACAAATGGAA
AAGCTGTCAGGGTTGGGTCGATCG
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Coding sequence (CDS) from alignment at H-paniculata_contig12465:766..1989-

>mRNA_H-paniculata_contig12465.1545.1 ID=mRNA_H-paniculata_contig12465.1545.1|Name=mRNA_H-paniculata_contig12465.1545.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=348bp|location=Sequence derived from alignment at H-paniculata_contig12465:766..1989- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCTCACTCCGACCGTTTGATTGAAGGTTGGGGCAGGAAGCTAGACGA
GCGTCAAGAAACCAGGCATCATCCTGTAGATGTCTCACTCCGACCGTTTG
ATTGAAGGTTGGGGCAGGAAGCTAGACGAGCGTCAAGAAACCAGGCATCA
TCCTGTAGACCAAGCACGAAAGCATTATCTGAGGCACCAATGTGGTCTCC
GGCACGAAGAAGGGTCTAGCTCATTGGATGACAGTACACTTTACCACGCA
TGAACCAAGCACGAAAGCATTATCTGAGGCACCAATGTGGTCTCCGGCAC
GAAGAAGGGTCTAGCTCATTGGATGACAGTACACTTTACCACGCATGA
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