mRNA_H-paniculata_contig12464.1544.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12464.1544.1
Unique NamemRNA_H-paniculata_contig12464.1544.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12464.1544.1 vs. uniprot
Match: A0A6H5KBC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBC1_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.350e-10
Identity = 36/73 (49.32%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:    7 QAVINITK----RGLAALKDVTHLDDREANSLDLRPTP-GLQYKRITLKVLLRDEFAKADAVVQETYIYRIAA 210
            ++V N T+     GL AL DVT+L +R A   DL+P+P GL + R+TLK LLR EFA     VQ  YIYR+A+
Sbjct:   92 KSVANATRALKEEGLNALMDVTYLPERPAGHRDLQPSPDGLHFARVTLKALLRPEFAAMPGEVQAAYIYRMAS 164
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12464.1544.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KBC1_9PHAE4.350e-1049.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12464contigH-paniculata_contig12464:2981..3193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size214
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.5655587-CDS-H-paniculata_contig12464:2980..31931622928965.5655587-CDS-H-paniculata_contig12464:2980..3193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12464 2981..3193 +
1691480684.7827275-CDS-H-paniculata_contig12464:2980..31931691480684.7827275-CDS-H-paniculata_contig12464:2980..3193Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12464 2981..3193 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12464.1544.1prot_H-paniculata_contig12464.1544.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12464 2981..3193 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12464.1544.1

>prot_H-paniculata_contig12464.1544.1 ID=prot_H-paniculata_contig12464.1544.1|Name=mRNA_H-paniculata_contig12464.1544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
NIQAVINITKRGLAALKDVTHLDDREANSLDLRPTPGLQYKRITLKVLLR
DEFAKADAVVQETYIYRIAA*
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mRNA from alignment at H-paniculata_contig12464:2981..3193+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12464.1544.1 ID=mRNA_H-paniculata_contig12464.1544.1|Name=mRNA_H-paniculata_contig12464.1544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at H-paniculata_contig12464:2981..3193+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACATCCAGGCCGTCATCAACATCACCAAACGCGGTTTAGCTGCATTGAA
GGATGTCACTCATCTCGACGATCGCGAGGCCAACAGCTTGGACCTCAGGC
CCACACCCGGGCTCCAGTACAAGCGCATCACTTTGAAGGTCCTCCTGCGG
GATGAGTTCGCCAAGGCAGATGCTGTGGTACAAGAAACCTATATATACCG
CATTGCAGCGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig12464:2981..3193+

>mRNA_H-paniculata_contig12464.1544.1 ID=mRNA_H-paniculata_contig12464.1544.1|Name=mRNA_H-paniculata_contig12464.1544.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig12464:2981..3193+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACATCCAGGCCGTCATCAACATCACCAAACGCGGTTTAGCTGCATTGAA
GGATGTCACTCATCTCGACGATCGCGAGGCCAACAGCTTGGACCTCAGGC
CCACACCCGGGCTCCAGTACAAGCGCATCACTTTGAAGGTCCTCCTGCGG
GATGAGTTCGCCAAGGCAGATGCTGTGGTACAAGAAACCTATATATACCG
CATTGCAGCGTGAAACATCCAGGCCGTCATCAACATCACCAAACGCGGTT
TAGCTGCATTGAAGGATGTCACTCATCTCGACGATCGCGAGGCCAACAGC
TTGGACCTCAGGCCCACACCCGGGCTCCAGTACAAGCGCATCACTTTGAA
GGTCCTCCTGCGGGATGAGTTCGCCAAGGCAGATGCTGTGGTACAAGAAA
CCTATATATACCGCATTGCAGCGTGA
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