mRNA_H-paniculata_contig12447.1533.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12447.1533.1
Unique NamemRNA_H-paniculata_contig12447.1533.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12447.1533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12447contigH-paniculata_contig12447:4900..5423 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size524
Cds size360
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928963.9181945-UTR-H-paniculata_contig12447:4899..50631622928963.9181945-UTR-H-paniculata_contig12447:4899..5063Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12447 4900..5063 +
1691480684.1349843-UTR-H-paniculata_contig12447:4899..50631691480684.1349843-UTR-H-paniculata_contig12447:4899..5063Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12447 4900..5063 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928964.0233395-CDS-H-paniculata_contig12447:5063..54231622928964.0233395-CDS-H-paniculata_contig12447:5063..5423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12447 5064..5423 +
1691480684.1428456-CDS-H-paniculata_contig12447:5063..54231691480684.1428456-CDS-H-paniculata_contig12447:5063..5423Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12447 5064..5423 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12447.1533.1prot_H-paniculata_contig12447.1533.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12447 5064..5423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12447.1533.1

>prot_H-paniculata_contig12447.1533.1 ID=prot_H-paniculata_contig12447.1533.1|Name=mRNA_H-paniculata_contig12447.1533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=120bp
MTLTYPDEPPMSGIDDPLRCTNECITKSQGATNVTLLKTRKIKGRALFPH
LNEEAEPQLAKRSVKKSNRKPNKTDLTLAAHTTSHNDNMIVADKAGYGGN
DHGDKGGKVKACKKDTSPL*
back to top

mRNA from alignment at H-paniculata_contig12447:4900..5423+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12447.1533.1 ID=mRNA_H-paniculata_contig12447.1533.1|Name=mRNA_H-paniculata_contig12447.1533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=524bp|location=Sequence derived from alignment at H-paniculata_contig12447:4900..5423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCCTAGCATTCTCTTCTCAAACCCAGAATCATCCCAACCGATACAAAACC
AAGTGAAACCGTTACAAGACATGCATGCTGGTTCTGGTCGAACCGCCACA
TTTCAATAACCACGCTAAGGACTATGTTGTCTTCCTACTCTAGCTACTAC
AGTCTCTGACCCTTATGACACTAACCTACCCAGATGAGCCTCCAATGAGT
GGCATTGACGATCCACTAAGGTGCACAAATGAGTGCATCACAAAATCCCA
AGGTGCAACAAATGTGACTCTTCTAAAAACAAGAAAAATTAAGGGCAGAG
CCCTCTTCCCGCACCTCAACGAGGAGGCAGAGCCTCAACTCGCGAAAAGA
TCGGTAAAAAAATCAAACAGAAAACCGAATAAAACAGATCTCACACTGGC
GGCCCATACAACGAGTCACAATGACAACATGATTGTGGCAGATAAAGCCG
GGTATGGGGGAAATGACCATGGAGACAAGGGGGGAAAAGTCAAAGCTTGC
AAAAAAGACACATCACCATTGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12447:4900..5423+

>mRNA_H-paniculata_contig12447.1533.1 ID=mRNA_H-paniculata_contig12447.1533.1|Name=mRNA_H-paniculata_contig12447.1533.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=720bp|location=Sequence derived from alignment at H-paniculata_contig12447:4900..5423+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACACTAACCTACCCAGATGAGCCTCCAATGAGTGGCATTGACGATCC
ACTAAGGTGCACAAATGAGTGCATCACAAAATCCCAAGGTGCAACAAATG
TGACTCTTCTAAAAACAAGAAAAATTAAGGGCAGAGCCCTCTTCCCGCAC
CTCAACGAGGAGGCAGAGCCTCAACTCGCGAAAAGATCGGTAAAAAAATC
AAACAGAAAACCGAATAAAACAGATCTCACACTGGCGGCCCATACAACGA
GTCACAATGACAACATGATTGTGGCAGATAAAGCCGGGTATGGGGGAAAT
GACCATGGAGACAAGGGGGGAAAAGTCAAAGCTTGCAAAAAAGACACATC
ACCATTGTGAATGACACTAACCTACCCAGATGAGCCTCCAATGAGTGGCA
TTGACGATCCACTAAGGTGCACAAATGAGTGCATCACAAAATCCCAAGGT
GCAACAAATGTGACTCTTCTAAAAACAAGAAAAATTAAGGGCAGAGCCCT
CTTCCCGCACCTCAACGAGGAGGCAGAGCCTCAACTCGCGAAAAGATCGG
TAAAAAAATCAAACAGAAAACCGAATAAAACAGATCTCACACTGGCGGCC
CATACAACGAGTCACAATGACAACATGATTGTGGCAGATAAAGCCGGGTA
TGGGGGAAATGACCATGGAGACAAGGGGGGAAAAGTCAAAGCTTGCAAAA
AAGACACATCACCATTGTGA
back to top