mRNA_H-paniculata_contig1240.1513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1240.1513.1
Unique NamemRNA_H-paniculata_contig1240.1513.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1240.1513.1 vs. uniprot
Match: D7G2I9_ECTSI (Coiled-coil domain-containing protein 86 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2I9_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 7.610e-16
Identity = 36/41 (87.80%), Postives = 40/41 (97.56%), Query Frame = 1 
Query:    1 ISKTHKLKAMSKKQLRQIKKRQVNSRTGEIEFVSPWGGGQK 123
            ISKTHK+K MSKKQLRQIKKRQ+NSRTGE+EFVSPWGGG+K
Sbjct:  223 ISKTHKMKTMSKKQLRQIKKRQINSRTGEVEFVSPWGGGKK 263
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BLAST of mRNA_H-paniculata_contig1240.1513.1 vs. uniprot
Match: A0A7S2SQP8_9STRA (Coiled-coil domain-containing protein 86 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQP8_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.300e-11
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ISKTHKLKAMSKKQLRQIKKRQVNSRTGEIEFVSPW 108
            I+KTHKLK M+KKQLRQIKK QVNSRTG++E VSPW
Sbjct:   78 ITKTHKLKTMNKKQLRQIKKTQVNSRTGQVELVSPW 113
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BLAST of mRNA_H-paniculata_contig1240.1513.1 vs. uniprot
Match: A0A836C9I7_9STRA (Coiled-coil domain-containing protein 86 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I7_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.270e-10
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ISKTHKLKAMSKKQLRQIKKRQVNSRTGEIEFVSPW 108
            I+KTHKLK MSKKQLRQIKK QVNS+TG++E VSPW
Sbjct:   93 ITKTHKLKGMSKKQLRQIKKMQVNSKTGQVELVSPW 128
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BLAST of mRNA_H-paniculata_contig1240.1513.1 vs. uniprot
Match: A0A7S2SQR5_9STRA (Coiled-coil domain-containing protein 86 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQR5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 4.080e-10
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 ISKTHKLKAMSKKQLRQIKKRQVNSRTGEIEFVSPW 108
            I+KTHKLK M+KKQLRQIKK QVNSRTG++E VSPW
Sbjct:  158 ITKTHKLKTMNKKQLRQIKKTQVNSRTGQVELVSPW 193
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BLAST of mRNA_H-paniculata_contig1240.1513.1 vs. uniprot
Match: A0A7S2CFD9_9STRA (Coiled-coil domain-containing protein 86 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CFD9_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 5.820e-8
Identity = 27/36 (75.00%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 ISKTHKLKAMSKKQLRQIKKRQVNSRTGEIEFVSPW 108
            ISKTHKLK M+KKQLRQIKK  VN +TG++E VSPW
Sbjct:  151 ISKTHKLKTMNKKQLRQIKKTIVNRQTGKVELVSPW 186
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BLAST of mRNA_H-paniculata_contig1240.1513.1 vs. uniprot
Match: A0A6U1MPN8_9STRA (Coiled-coil domain-containing protein 86 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1MPN8_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 2.770e-7
Identity = 24/36 (66.67%), Postives = 31/36 (86.11%), Query Frame = 1 
Query:    1 ISKTHKLKAMSKKQLRQIKKRQVNSRTGEIEFVSPW 108
            I+K HKLK +SKKQLRQIKK +V+ +TG++E VSPW
Sbjct:   97 ITKVHKLKTLSKKQLRQIKKTRVDPKTGQVELVSPW 132
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1240.1513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G2I9_ECTSI7.610e-1687.80Coiled-coil domain-containing protein 86 n=2 Tax=E... [more]
A0A7S2SQP8_9STRA9.300e-1180.56Coiled-coil domain-containing protein 86 n=1 Tax=R... [more]
A0A836C9I7_9STRA1.270e-1080.56Coiled-coil domain-containing protein 86 (Fragment... [more]
A0A7S2SQR5_9STRA4.080e-1080.56Coiled-coil domain-containing protein 86 n=1 Tax=R... [more]
A0A7S2CFD9_9STRA5.820e-875.00Coiled-coil domain-containing protein 86 n=1 Tax=D... [more]
A0A6U1MPN8_9STRA2.770e-766.67Coiled-coil domain-containing protein 86 n=1 Tax=F... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1240contigH-paniculata_contig1240:27755..27886 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog2880.D7G2I9
Preferred nameCCDC86
KEGG koko:K14822
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
EggNOG free text desc.Cgr1 family
EggNOG OGsKOG4538@1,KOG4538@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_001690.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size132
Cds size105
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.7450135-CDS-H-paniculata_contig1240:27754..278591622928960.7450135-CDS-H-paniculata_contig1240:27754..27859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1240 27755..27859 -
1691480682.8835382-CDS-H-paniculata_contig1240:27754..278591691480682.8835382-CDS-H-paniculata_contig1240:27754..27859Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1240 27755..27859 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928960.759034-UTR-H-paniculata_contig1240:27859..278861622928960.759034-UTR-H-paniculata_contig1240:27859..27886Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1240 27860..27886 -
1691480682.896923-UTR-H-paniculata_contig1240:27859..278861691480682.896923-UTR-H-paniculata_contig1240:27859..27886Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1240 27860..27886 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1240.1513.1prot_H-paniculata_contig1240.1513.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1240 27755..27859 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1240.1513.1

>prot_H-paniculata_contig1240.1513.1 ID=prot_H-paniculata_contig1240.1513.1|Name=mRNA_H-paniculata_contig1240.1513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=35bp
MSKKQLRQIKKRQVNSRTGEIEFVSPWGGGQKHK*
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mRNA from alignment at H-paniculata_contig1240:27755..27886-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1240.1513.1 ID=mRNA_H-paniculata_contig1240.1513.1|Name=mRNA_H-paniculata_contig1240.1513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig1240:27755..27886- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTCGAAGACCCACAAGCTGAAGGCGATGAGCAAGAAGCAGCTCAGGCA
AATCAAGAAGAGACAAGTCAACTCGCGCACTGGCGAGATCGAGTTCGTGA
GCCCTTGGGGTGGTGGCCAAAAGCACAAGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1240:27755..27886-

>mRNA_H-paniculata_contig1240.1513.1 ID=mRNA_H-paniculata_contig1240.1513.1|Name=mRNA_H-paniculata_contig1240.1513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at H-paniculata_contig1240:27755..27886- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCAAGAAGCAGCTCAGGCAAATCAAGAAGAGACAAGTCAACTCGCG
CACTGGCGAGATCGAGTTCGTGAGCCCTTGGGGTGGTGGCCAAAAGCACA
AGTAAATGAGCAAGAAGCAGCTCAGGCAAATCAAGAAGAGACAAGTCAAC
TCGCGCACTGGCGAGATCGAGTTCGTGAGCCCTTGGGGTGGTGGCCAAAA
GCACAAGTAA
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