mRNA_H-paniculata_contig12370.1493.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12370.1493.1
Unique NamemRNA_H-paniculata_contig12370.1493.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: D8LKL6_ECTSI (Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKL6_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 4.160e-34
Identity = 51/81 (62.96%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    1 LLEFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            L E+L DP E  LY SMT  +GWCKHFD+E+RACT++ DRPRFCRVET+TFG MYG++  DMD+FC++CC +QI  VYG++
Sbjct:  154 LAEYLPDPEEFDLYMSMTGSDGWCKHFDKESRACTVYSDRPRFCRVETETFGSMYGVEPEDMDDFCSSCCNEQISDVYGAE 234          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: W7TMW6_9STRA (Uncharacterized protein family UPF0153 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TMW6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 7.540e-28
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 1
Query:    1 LLEFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGS 240
            LL++  DP +LA Y SM  ++GWC H+D+  RACT+FEDRP FCRVE  TF  MYG+   +MD+FCT+CC++QI  VYG+
Sbjct:  165 LLDYFDDPKDLAAYNSMVGDDGWCIHYDKAARACTVFEDRPWFCRVEGKTFEKMYGVTGSEMDKFCTSCCREQIADVYGT 244          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: UPI0019087D7A (YkgJ family cysteine cluster protein n=1 Tax=Sphaerospermopsis aphanizomenoides TaxID=459663 RepID=UPI0019087D7A)

HSP 1 Score: 102 bits (254), Expect = 1.830e-26
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = 1
Query:    7 EFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            E+LS P E+ LY SM  E+GWC +FD E R CTI+ DRPRFCRVE +TF DMYGI+  ++++F   CC+ QI  VYG +
Sbjct:   26 EYLS-PEEMGLYLSMVGEDGWCVNFDHETRECTIYADRPRFCRVEAETFQDMYGIEPEELNDFAIDCCRQQIDCVYGDR 103          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: A0A1E5QE50_9CYAN (Fe-S cluster protein n=2 Tax=unclassified Desertifilum TaxID=2621682 RepID=A0A1E5QE50_9CYAN)

HSP 1 Score: 102 bits (253), Expect = 2.600e-26
Identity = 41/80 (51.25%), Postives = 59/80 (73.75%), Query Frame = 1
Query:    4 LEFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            LE   +P EL++Y S+  E+GWC HFDQ+ R C+I+ DRPRFCRV+ D FGD+YGI+  ++++F   CC++QI  VYG +
Sbjct:   24 LEDYLNPEELSVYLSLVGEDGWCIHFDQDTRQCSIYADRPRFCRVQQDVFGDLYGIEPEELNDFAIDCCREQIEGVYGER 103          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: K9TJ28_9CYAN (Putative Fe-S oxidoreductase n=4 Tax=Oscillatoriaceae TaxID=1892254 RepID=K9TJ28_9CYAN)

HSP 1 Score: 100 bits (250), Expect = 1.100e-25
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1
Query:    1 LLEFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            L E+LS P ELALY SM   +GWC H DQ NR CTI++DRPRFCRV  D F +MYGI+  ++DEF   CC+ QI  V+G +
Sbjct:   29 LAEYLS-PEELALYLSMVGPDGWCIHLDQLNRECTIYDDRPRFCRVLPDVFEEMYGIEPEELDEFAIECCQQQIEAVHGDR 108          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: A0A6M0EPK4_9CYAN (YkgJ family cysteine cluster protein n=4 Tax=unclassified Symploca TaxID=2620434 RepID=A0A6M0EPK4_9CYAN)

HSP 1 Score: 99.4 bits (246), Expect = 3.010e-25
Identity = 40/80 (50.00%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    4 LEFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            LE    P EL LY SM  E GWC HFD   R C I++DRPRFCRV  D FGDM+GI+  ++++F   CC++ I  +YG +
Sbjct:   24 LEQYLSPQELELYLSMVGEGGWCMHFDHATRQCRIYQDRPRFCRVRADVFGDMFGIEPAELNDFAIECCREHISELYGDR 103          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: K9VVA6_9CYAN (Uncharacterized protein n=1 Tax=Crinalium epipsammum PCC 9333 TaxID=1173022 RepID=K9VVA6_9CYAN)

HSP 1 Score: 99.0 bits (245), Expect = 4.270e-25
Identity = 43/79 (54.43%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    7 EFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            ++LS P EL LY SM  E GWC +FD   R C I+EDRPRFCRVE D F D+YG++S +++EF   CC+ QI  VYG +
Sbjct:   26 QYLS-PEELELYLSMVGEGGWCVNFDHIKRECRIYEDRPRFCRVEADVFADLYGVESEELNEFAIECCRQQIEGVYGDR 103          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: A0A3S1IFW9_ANAVA (Fe-S cluster protein n=5 Tax=Nostocaceae TaxID=1162 RepID=A0A3S1IFW9_ANAVA)

HSP 1 Score: 99.0 bits (245), Expect = 4.270e-25
Identity = 43/79 (54.43%), Postives = 56/79 (70.89%), Query Frame = 1
Query:    7 EFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            E+LS P EL LY SM  + GWC +FDQ  R CTI+E RPRFCRVE +TF DM+GI+  ++++F   CC+ QI  VYG +
Sbjct:   26 EYLS-PEELGLYLSMVGDGGWCVNFDQTTRECTIYEHRPRFCRVEVETFQDMFGIEPEELNDFAIDCCRQQIEAVYGDR 103          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: UPI001686C0EB (YkgJ family cysteine cluster protein n=2 Tax=Cyanobacteria TaxID=1117 RepID=UPI001686C0EB)

HSP 1 Score: 98.6 bits (244), Expect = 7.570e-25
Identity = 38/74 (51.35%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   22 PNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            P ELALY SM  ++GWC HFD+  R C+++ DRPRFCRVE D F D++G++  ++++F  ACC++QI  VYG +
Sbjct:   30 PTELALYLSMVGDDGWCVHFDKATRECSVYNDRPRFCRVEPDVFQDLFGVEPTELNDFAIACCQEQIEGVYGDR 103          
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Match: UPI000D1F5BC5 (YkgJ family cysteine cluster protein n=1 Tax=Cyanothece sp. BG0011 TaxID=2082950 RepID=UPI000D1F5BC5)

HSP 1 Score: 98.6 bits (244), Expect = 7.790e-25
Identity = 45/80 (56.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query:    4 LEFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDTFGDMYGIDSGDMDEFCTACCKDQIGLVYGSK 243
            LE    P EL  Y S+  E+GWC HFD E R C I+E RPRFCRV+ DTF  MY IDS D +EF   CC+ QI  VYG+K
Sbjct:   28 LEDYLTPEELEHYLSLVGEDGWCIHFDHETRKCLIYEQRPRFCRVQPDTFEAMYDIDSSDFNEFAIDCCRQQIEGVYGAK 107          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12370.1493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKL6_ECTSI4.160e-3462.96Fe-S-cluster oxidoreductase-like n=2 Tax=Ectocarpu... [more]
W7TMW6_9STRA7.540e-2856.25Uncharacterized protein family UPF0153 n=1 Tax=Nan... [more]
UPI0019087D7A1.830e-2655.70YkgJ family cysteine cluster protein n=1 Tax=Sphae... [more]
A0A1E5QE50_9CYAN2.600e-2651.25Fe-S cluster protein n=2 Tax=unclassified Desertif... [more]
K9TJ28_9CYAN1.100e-2556.79Putative Fe-S oxidoreductase n=4 Tax=Oscillatoriac... [more]
A0A6M0EPK4_9CYAN3.010e-2550.00YkgJ family cysteine cluster protein n=4 Tax=uncla... [more]
K9VVA6_9CYAN4.270e-2554.43Uncharacterized protein n=1 Tax=Crinalium epipsamm... [more]
A0A3S1IFW9_ANAVA4.270e-2554.43Fe-S cluster protein n=5 Tax=Nostocaceae TaxID=116... [more]
UPI001686C0EB7.570e-2551.35YkgJ family cysteine cluster protein n=2 Tax=Cyano... [more]
UPI000D1F5BC57.790e-2556.25YkgJ family cysteine cluster protein n=1 Tax=Cyano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12370contigH-paniculata_contig12370:4061..4303 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score128.6
Seed ortholog evalue1.3e-27
Seed eggNOG ortholog2880.D8LKL6
KEGG koko:K06940
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Putative zinc- or iron-chelating domain
EggNOG OGs2RZ66@2759,COG0727@1
Ec32 ortholog descriptionPutative zinc- or iron-chelating domain containing protein
Ec32 orthologEc-16_003430.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size243
Cds size243
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.0837405-CDS-H-paniculata_contig12370:4060..43031622928957.0837405-CDS-H-paniculata_contig12370:4060..4303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12370 4061..4303 -
1691480681.452387-CDS-H-paniculata_contig12370:4060..43031691480681.452387-CDS-H-paniculata_contig12370:4060..4303Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12370 4061..4303 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12370.1493.1prot_H-paniculata_contig12370.1493.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12370 4061..4303 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12370.1493.1

>prot_H-paniculata_contig12370.1493.1 ID=prot_H-paniculata_contig12370.1493.1|Name=mRNA_H-paniculata_contig12370.1493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=81bp
LLEFLSDPNELALYKSMTLENGWCKHFDQENRACTIFEDRPRFCRVETDT
FGDMYGIDSGDMDEFCTACCKDQIGLVYGSK
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mRNA from alignment at H-paniculata_contig12370:4061..4303-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12370.1493.1 ID=mRNA_H-paniculata_contig12370.1493.1|Name=mRNA_H-paniculata_contig12370.1493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=243bp|location=Sequence derived from alignment at H-paniculata_contig12370:4061..4303- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTAGAGTTCTTGTCAGATCCGAACGAGCTGGCGCTGTACAAGTCGAT GACGCTCGAGAATGGTTGGTGCAAGCACTTCGACCAGGAAAACAGGGCCT GCACTATCTTCGAAGATCGACCACGGTTCTGCCGCGTTGAGACCGACACG TTTGGCGACATGTACGGCATCGACTCTGGAGACATGGACGAATTTTGCAC GGCTTGCTGCAAGGATCAGATCGGTCTTGTCTATGGGTCGAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig12370:4061..4303-

>mRNA_H-paniculata_contig12370.1493.1 ID=mRNA_H-paniculata_contig12370.1493.1|Name=mRNA_H-paniculata_contig12370.1493.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=486bp|location=Sequence derived from alignment at H-paniculata_contig12370:4061..4303- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGTTAGAGTTCTTGTCAGATCCGAACGAGCTGGCGCTGTACAAGTCGAT
GACGCTCGAGAATGGTTGGTGCAAGCACTTCGACCAGGAAAACAGGGCCT
GCACTATCTTCGAAGATCGACCACGGTTCTGCCGCGTTGAGACCGACACG
TTTGGCGACATGTACGGCATCGACTCTGGAGACATGGACGAATTTTGCAC
GGCTTGCTGCAAGGATCAGATCGGTCTTGTCTATGGGTCGAAGTTGTTAG
AGTTCTTGTCAGATCCGAACGAGCTGGCGCTGTACAAGTCGATGACGCTC
GAGAATGGTTGGTGCAAGCACTTCGACCAGGAAAACAGGGCCTGCACTAT
CTTCGAAGATCGACCACGGTTCTGCCGCGTTGAGACCGACACGTTTGGCG
ACATGTACGGCATCGACTCTGGAGACATGGACGAATTTTGCACGGCTTGC
TGCAAGGATCAGATCGGTCTTGTCTATGGGTCGAAG
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