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Homology
BLAST of mRNA_H-paniculata_contig12365.1488.1 vs. uniprot
Match: A0A6H5JBC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBC0_9PHAE) HSP 1 Score: 136 bits (342), Expect = 1.240e-31 Identity = 106/210 (50.48%), Postives = 126/210 (60.00%), Query Frame = 1
Query: 247 APAARGDHGVLRSWLLDVYSKFKPENVPKVDALMAKYKDMEEKMIGGVLKKYGQHGVQAPPGWGSGGITAAAPA-----PSGFGQAPTLAFGQTSAFGATSTMGFGAQAQXXXXXXXXXXXXPTAFGQPTATPTFGKG*TASTFGAA-APAPAAFGGGASGFGAPSALGGGGVF------GAPAPAPQAATQVMHRKSILSGGFGAFASA 840
APA RGD +LR+W+ +VY+KFKPENVPK+D L+ KY + E KMI G+LKKY Q+GV P GW + G A+APA P GFGQ AFGQ S FG +T GFG Q XXX T FGQP T G G A+ FG+ APA AFGG +GFGAPS+LGGG VF A A P A R + +GGF AFA+A
Sbjct: 2453 APAGRGDPALLRAWMQEVYTKFKPENVPKIDRLLVKYTNNEWKMIEGILKKYAQYGVGPPAGWSAPGGAASAPAXXXPAPMGFGQTAHPAFGQVSGFGG-ATSGFGQQQPQQQXXXQ------TPFGQPAQT---GFGAPATGFGSTPAPASNAFGG--TGFGAPSSLGGGSVFXXXAAAAATAGGPTATAAPTVRLADGAGGFSAFAAA 2650
BLAST of mRNA_H-paniculata_contig12365.1488.1 vs. uniprot
Match: D7FXZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXZ7_ECTSI) HSP 1 Score: 112 bits (279), Expect = 2.140e-24 Identity = 73/132 (55.30%), Postives = 84/132 (63.64%), Query Frame = 1
Query: 247 APAARGDHGVLRSWLLDVYSKFKPENVPKVDALMAKYKDMEEKMIGGVLKKYGQHGVQAPPGWGSGGITAAAPA-----PSGFGQAPTLAFGQTSAFGATSTMGFGAQAQXXXXXXXXXXXXPTAFGQPTAT 627
APA RGD VLR+W+ +VY+KFKPENVPK+D L+ KY + E KMI G+LKKY Q+GV P GW + G A APA P GFGQ AFGQ S FG +T GFG Q XXXXX T FGQP T
Sbjct: 236 APAGRGDPAVLRAWMQEVYTKFKPENVPKIDRLLVKYTNNEWKMIEGILKKYAQYGVGPPAGWSAPGGAAPAPAASQPAPMGFGQTAQPAFGQASGFGG-ATSGFGQQQPQXXXXXQ------TPFGQPPQT 360
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | conserved unknown protein |
| Ec32 ortholog | Ec-09_002480.1 |
| Exons | 6 |
| Model size | 1020 |
| Cds size | 303 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig12365.1488.1 >prot_H-paniculata_contig12365.1488.1 ID=prot_H-paniculata_contig12365.1488.1|Name=mRNA_H-paniculata_contig12365.1488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=101bp
MAKYKDMEEKMIGGVLKKYGQHGVQAPPGWGSGGITAAAPAPSGFGQAPT
LAFGQTSAFGATSTMGFGAQAQQQQQQQQQQQQQPTAFGQPTATPTFGKG
* back to topmRNA from alignment at H-paniculata_contig12365:449..4783+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig12365.1488.1 ID=mRNA_H-paniculata_contig12365.1488.1|Name=mRNA_H-paniculata_contig12365.1488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4335bp|location=Sequence derived from alignment at H-paniculata_contig12365:449..4783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGCGCCTTGTCCTCTTGCTCAGTCTTCATCACCGTTCAACTCTGCACC
GAGGGCATTTGGTACCGCCACACCCGCGACGAATACACCGAGTCCTTTTG
GAGCCCCCGCAGCAGCGGCGCCTGCCCCGTCTCTATTCGGGGCGCCGGCT
GCAGCAGGTGTGTGGTTGGGTTGGGTCGGTCGGTCGGCCTAGTTTTTTTC
CTTGGTTTGCTTTGATTTCGTCATTCAGCAGTTTTGGAATTTACTGAGTG
TACGACACACAAATAAATGCCTCCCAATTGGTTCGATGTTTTCTAAATGG
TACATGTTACATTCTACACCTCTACATGTTTACTGTTCATCGGAGAAAAT
AAATAAATGCTTCGCTCTCCCGCTTTCACCCCTAAAATTAAACAGGAGCC
CCGACTTTTGGAGCCCCTGCGGCCGCCGCCCCGTCCCCCTTCGGCGCGCC
ACAGGGCGGCCAGCAGCAGCCTAGTCCGTTTGCGCCCGCCCCGGCTGCAC
GGGGTGACCATGGCGTGCTGAGATCGTGGCTGCTTGACGTGTACAGCAAA
TTCAAGCCGGAGAATGTGCCCAAGGTGGACGCGCTCATGGCCAAATACAA
GTAAGATATAGAAACACTCATAATTTCGTCTAAAACGGCCCCGCACCTCG
AATTCGCGAGCGGACGCGTGTCACGCATCTCGCAGCGGCGCATGGCCCTG
TCGCTCTAATTTCCTCCCCACGACCCTCCGCACAAACGAAGCTAAACTGG
CTCATCCCATCTGCGTCTCTTTCGCAGCATCGCATTGTTGCTTTATCGGT
TCGTGACCAATGACCAATACGAGAGTCGTCAACACCGTCAAGAGGGCGTC
CGCTCCAGAAGAGAAGGAAGTGGAAGGGGGCGTCAGCAGTCGTGACGGAA
CCGCAAGTTATAGAGTACAAGGAAAGGGAAAGCCACCGAAACCAGCGTCA
ATTTACGGTCGTGGGTCTGTCTGTCCCTCGTCATTCCTGACCCTCAAAAG
ATCATTCCCACTCGGTGGAATTTCGCAAGCGTATTCTCAGACCCGTCTAC
CAAATGCCGTGTTTGGTGTATATTCTGAGGTTCGGTTGGGTTCTCATGAA
AATTTGACGCACAGAGCAAATATGGCTTTTTTTTTTTTTGGTGTTTTTTG
GTGTTTTTTGGGACTGACGAATAATGACTCATGTTTCGGCAGGGGGTGGG
GGGCGGGGGGGCGGGAGGACGGGGCAATTTTTTTCCCACCGGAAAGGTTC
TTCTTCACCTATGAAGTTATGCAGCTGAATTCAACCTTGGTTTTATGTAC
ATTTTTATCAGTAATATTGGATCATGACCATTGAGGTATGCTTGTATCAG
CGGACGAAACAAGGGTTGACATTTGTGTGTCTGTGTCTGTGTCTGTGTGT
CTGTGTCTGTGTCTGTGTCTGTGTGTGTATGTGTGTGTGCTGCTATTGCT
TCTGCTACTGCTTTGATATTTTTCGCCCGTTATCATGTTAACGACGAAGT
TATGCTCCTTGTTGTTCATTTGTTTGTTTGTTTGTTGTCCCGCAGAGATA
TGGAAGAGAAGATGATTGGCGGCGTACTCAAGAAATACGGACAGCACGGC
GTGCAAGCGCCGCCTGGGTGGGGGTCAGGCGGCATCACTGCGGCAGCGCC
GGCACCATCCGGATTTGGGCAGGTATAAAACACTGTATAGATGTGAAGGG
TTATGTTTGTTAATGTGTCTGCTTTTTTTTTTTTTCGGCTTTGAATATAT
ATATATATATATATATATATATATATATATGTGCTGTTTTTGTGTATGTA
GGACTTTTTTTTTTTTCTTTTGTGGATCTTTTTGTTTGGAACCATTTTTC
TCTTTTTTTTCTGACTGCTTATTTTTCATTCCCGCGAGAACCCATACGTA
CTGGGAAGGACCGGGAGGGGCCGAGTGGGGGACGGGAATGGAGGGGATGG
AATATTCAAAATAAGCCTTCATCTCATCACCGTAGTAAATTGACCTAAGG
CTTTATCATGCCACAGGCAGTTGGACTAAAACCTCTGAAGTTCATATTAT
AACTCCATTGTGCATATGTTGATTGAGGTTATATATGTGACTTTAATTTA
CACACTTTTACAGGCTTTTGATCAGCAATATTAAAAACGATAGGCGGAGG
GTCAGGTCTTATTTCGCTTCTTTTGGGGGGTTTGATCACGAAAGACCACT
GATTAGCTTGAGCTCTCTACAGGTACGCGATAGATAGTGCACGCAAGGCA
TGTTTCTTTTGGATAAATACAAACTAAATGGCGTTTTGTTGTAAGAGTCA
GTAAAATAATGACGTTTCAAGGAGAGTACACCTACAGAGCATCCGTTTGT
CAAGCCTGTTTCCCGCATACTCTTGCTTTTTTTTCTTTTTTGTTTGTTTT
TTTAACCCCCGGAAGGCTGAGGCAAAATCCTTTACCGATGCTTCCATACT
TGAGTATTTTACCGAAATATTTCTACATTTCGTTTAACAAAACAGTTGGT
TTTTGTTCTGTTTATCTTGCCCTCGTCGTCATCGTCGTCGTCGTCATCGT
CATCATCACCATCATCACCATCATCATCATCATCGCATTGATATTTTTAT
ACTCCTTTTCTTTGCTTTCAGGCGCCGACCCTAGCTTTCGGACAGACGTC
CGCGTTTGGCGCGACGTCGACGATGGGGTTTGGAGCACAAGCGCAGCAGC
AGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCCAACGGCTTTCGGGCAA
CCCACAGCTACGCCCACATTCGGTAAGGGGTGTCATTCGAATTTCAAACA
GATGGATGGCATAGACAGCATCGAGCCCAAATCATGCCAGACAAGGCTTT
GAAAGCTCTGATTTTTTTGTGTTGAATTGATTCCATGATAGCCGTAAGGC
AACCTACGGCATCTGTCGGTCCCACTCGTGGGCGTAGTGTGTTGGGCGCG
CCGTGCTCGATAAAACGGTATCTTGGCACGGAATTGTGCAAATTTTGTGT
TTTCCTTTTGGCTGAATGTTGCAAATCGACCACGTCAAGGGTACTACTGT
TGTCGAAATAAATGTATTGTGATACCCTGCTTCCCTCCTCTCAAATCCCC
CCAGGCCCCTTTTTTTATATATAAGTAAAAGAAAAAAAAACCATATATAT
ATATATATGGGCTTCGCTAACTTTTTTCGCAAACTCGAAATCTATTTTTT
TTTGTATAAATTCGAACTGGGGGGGATGGTTTCGATTCTTGGACGTTTTG
GTGAACCTGATTGCTGACCATCAAATTTGAAACTTGAAATTTGCTGCCAG
GAACAGCCCTTGAGCTCTCGCGTGGCAACGGCTACTGCATGTCAGTCATT
ATAATACAACATATGGGTGCGACGGAACACGAGAGAGACAGACGTCCGCA
GCGTAATCACAGTCGTGGTGGTAGTAGTAGTAGTAGTGCACACGGCACTG
GCAGGCTTGCAGCCAAAACGTCAAAATTCGCTTTTTAAATATTCAAGCCG
TGCGTAGTAGTAGTAGTAGTATTTATTTAGTCAGTTTTCTCCCCAAGCTC
TGCCCCCAACGTCGTCCTTGATTATTAAAAAGAAGAAAAAAAATGTCTCT
CGCTGGCTTTTTTGTCGTCTCTCGAAGGAACCGCAAGTACCTTTGGAGCG
GCTGCCCCCGCGCCGGCGGCATTTGGGGGAGGCGCATCCGGGTTCGGGGC
ACCTAGCGCCCTGGGCGGTGGGGGCGTGTTCGGGGCACCGGCGCCGGCTC
CTCAAGCCGCGACTCAGGTGATGCACAGAAAGAGTATCTTGTCTGTACCA
AATGGGAAAACGTGGTGATATTTTTGGGCTTGTGGGAGTGAGGGTGGTGA
CGGGGGATATTAACATTTGCTACTGTCCTGATTGATTGTTGTTGATAGTG
TTGGTGGTGTTGGTGGTGTTTGTATTTCTGCAGAGTTAAATCAGCAAGAG
CTGCCAAAAATGTGTTGAGTCACATGGATTCACCCCCCCTCCCCACCCCA
TCCCACCCCCCCCCGCCCTCCTTCACTGGCAACGCCTGCAACAGCTGACT
CATTTCTAAATAGCGCCTTTCTAAAATCTCCGCAAATGTTTCTAAATCTT
ACTAATACAATCAACCATGGATACGCAGGGCGGATTCGGTGCTTTCGCCT
CGGCTGCCCAGCCAACGTTCGGCAGCTCAGCGGCAGGGGGTGCCGGGGGC
GGGTTTGGCGCCTTCGCCAGCCAGGCCAACACCGGCACGGGAGGCTTCGG
GTCGTTCGGAGGGGGCAGCTCCAGCGGTGGCAGTACGGCGGGCGGCGGCG
CTTTTAGTGGTAGCAGCTTCCGGCAAATGCGTGGA back to topCoding sequence (CDS) from alignment at H-paniculata_contig12365:449..4783+ >mRNA_H-paniculata_contig12365.1488.1 ID=mRNA_H-paniculata_contig12365.1488.1|Name=mRNA_H-paniculata_contig12365.1488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at H-paniculata_contig12365:449..4783+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCAAATACAAATGGCCAAATACAAAGATATGGAAGAGAAGATGATT
GGCGGCGTACTCAAGAAATACGGACAGCACGGCGTGCAAGCGCCGCCTGG
GTGGGGGTCAGGCGGCATCACTGCGGCAGCGCCGGCACCATCCGGATTTG
GGCAGAGATATGGAAGAGAAGATGATTGGCGGCGTACTCAAGAAATACGG
ACAGCACGGCGTGCAAGCGCCGCCTGGGTGGGGGTCAGGCGGCATCACTG
CGGCAGCGCCGGCACCATCCGGATTTGGGCAGGCGCCGACCCTAGCTTTC
GGACAGACGTCCGCGTTTGGCGCGACGTCGACGATGGGGTTTGGAGCACA
AGCGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAACAGCCAACGG
CTTTCGGGCAACCCACAGCTACGCCCACATTCGGTAAGGGGTGCGCCGAC
CCTAGCTTTCGGACAGACGTCCGCGTTTGGCGCGACGTCGACGATGGGGT
TTGGAGCACAAGCGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAA
CAGCCAACGGCTTTCGGGCAACCCACAGCTACGCCCACATTCGGTAAGGG
GTGAGA back to top
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