mRNA_H-paniculata_contig12339.1478.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12339.1478.1
Unique NamemRNA_H-paniculata_contig12339.1478.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12339.1478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12339contigH-paniculata_contig12339:4625..5196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size572
Cds size570
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928955.488617-CDS-H-paniculata_contig12339:4624..51941622928955.488617-CDS-H-paniculata_contig12339:4624..5194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12339 4625..5194 +
1691480680.7229033-CDS-H-paniculata_contig12339:4624..51941691480680.7229033-CDS-H-paniculata_contig12339:4624..5194Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12339 4625..5194 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12339.1478.1prot_H-paniculata_contig12339.1478.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12339 4625..5194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12339.1478.1

>prot_H-paniculata_contig12339.1478.1 ID=prot_H-paniculata_contig12339.1478.1|Name=mRNA_H-paniculata_contig12339.1478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
DHGSIGRHRGVVGIAGTSNNLLWSASVQRVGAEEDEEECAGGDEDQLQQR
SIDSGVDDQPRASSRSARFAMAARVAQSPTTADRPSRQSNSAAGAATANG
NAATPMTRGRRGNSLMLTPASSSARAAGVGTRFSRTSSASQDRRASRRRS
FSLPSSSASATDAGSSASSSRRDSGVAVPRDRLSAVKMER
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mRNA from alignment at H-paniculata_contig12339:4625..5196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12339.1478.1 ID=mRNA_H-paniculata_contig12339.1478.1|Name=mRNA_H-paniculata_contig12339.1478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=572bp|location=Sequence derived from alignment at H-paniculata_contig12339:4625..5196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCATGGCAGCATCGGCCGCCACCGTGGCGTTGTCGGCATCGCCGGTAC
CAGTAACAACTTGCTGTGGAGCGCCTCAGTGCAGCGAGTGGGCGCGGAGG
AGGACGAGGAGGAGTGCGCCGGGGGCGACGAGGACCAGCTGCAGCAGCGT
TCGATCGACTCCGGAGTTGACGACCAACCTCGGGCTAGTAGTAGATCAGC
GCGGTTTGCTATGGCGGCGAGAGTTGCACAGTCGCCCACCACCGCCGATA
GACCAAGTCGCCAGTCGAACTCGGCTGCTGGCGCTGCTACGGCGAACGGA
AACGCGGCGACGCCCATGACTCGTGGGCGTCGTGGGAACTCGCTTATGCT
AACGCCTGCTTCGTCGTCGGCGAGGGCAGCAGGGGTTGGGACTAGATTTT
CCCGAACGTCGTCTGCATCACAGGACAGGCGAGCATCAAGAAGACGAAGT
TTTTCGTTGCCGTCGTCATCAGCTAGTGCTACTGACGCCGGCTCCAGCGC
CTCTTCTAGCCGCCGTGACTCTGGTGTCGCTGTCCCGCGCGACAGGCTTT
CCGCGGTAAAGATGGAGCGTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig12339:4625..5196+

>mRNA_H-paniculata_contig12339.1478.1 ID=mRNA_H-paniculata_contig12339.1478.1|Name=mRNA_H-paniculata_contig12339.1478.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig12339:4625..5196+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATCATGGCAGCATCGGCCGCCACCGTGGCGTTGTCGGCATCGCCGGTAC
CAGTAACAACTTGCTGTGGAGCGCCTCAGTGCAGCGAGTGGGCGCGGAGG
AGGACGAGGAGGAGTGCGCCGGGGGCGACGAGGACCAGCTGCAGCAGCGT
TCGATCGACTCCGGAGTTGACGACCAACCTCGGGCTAGTAGTAGATCAGC
GCGGTTTGCTATGGCGGCGAGAGTTGCACAGTCGCCCACCACCGCCGATA
GACCAAGTCGCCAGTCGAACTCGGCTGCTGGCGCTGCTACGGCGAACGGA
AACGCGGCGACGCCCATGACTCGTGGGCGTCGTGGGAACTCGCTTATGCT
AACGCCTGCTTCGTCGTCGGCGAGGGCAGCAGGGGTTGGGACTAGATTTT
CCCGAACGTCGTCTGCATCACAGGACAGGCGAGCATCAAGAAGACGAAGT
TTTTCGTTGCCGTCGTCATCAGCTAGTGCTACTGACGCCGGCTCCAGCGC
CTCTTCTAGCCGCCGTGACTCTGGTGTCGCTGTCCCGCGCGACAGGCTTT
CCGCGGTAAAGATGGAGCGTGATCATGGCAGCATCGGCCGCCACCGTGGC
GTTGTCGGCATCGCCGGTACCAGTAACAACTTGCTGTGGAGCGCCTCAGT
GCAGCGAGTGGGCGCGGAGGAGGACGAGGAGGAGTGCGCCGGGGGCGACG
AGGACCAGCTGCAGCAGCGTTCGATCGACTCCGGAGTTGACGACCAACCT
CGGGCTAGTAGTAGATCAGCGCGGTTTGCTATGGCGGCGAGAGTTGCACA
GTCGCCCACCACCGCCGATAGACCAAGTCGCCAGTCGAACTCGGCTGCTG
GCGCTGCTACGGCGAACGGAAACGCGGCGACGCCCATGACTCGTGGGCGT
CGTGGGAACTCGCTTATGCTAACGCCTGCTTCGTCGTCGGCGAGGGCAGC
AGGGGTTGGGACTAGATTTTCCCGAACGTCGTCTGCATCACAGGACAGGC
GAGCATCAAGAAGACGAAGTTTTTCGTTGCCGTCGTCATCAGCTAGTGCT
ACTGACGCCGGCTCCAGCGCCTCTTCTAGCCGCCGTGACTCTGGTGTCGC
TGTCCCGCGCGACAGGCTTTCCGCGGTAAAGATGGAGCGT
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