mRNA_H-paniculata_contig12327.1470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12327.1470.1
Unique NamemRNA_H-paniculata_contig12327.1470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12327.1470.1 vs. uniprot
Match: A0A6H5JAT5_9PHAE (MinC_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAT5_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 3.590e-39
Identity = 81/112 (72.32%), Postives = 90/112 (80.36%), Query Frame = 1 
Query:   13 GGEVIEEERAFEWMSGMLLQGSGALRTAGIVPAAGSSVVLDLGAISQDGSPHGRPAGRASLSGAVRAVKAAGFVPIGVCNTSHDVLKLAAEQGLPEVMMVQARPRA-PPSVA 345
            GGE  EEER F+WM    LQG GAL T G+ P AGS VVLDLGA+SQDGSPHGRPAGRASL+G  RAV+AAG VP+GV N SHDVLK A+EQGLPE+MMV ARPR+ PP VA
Sbjct:  138 GGEKDEEERVFQWMR-EALQGPGALGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGCSRAVRAAGLVPVGVSNASHDVLKTASEQGLPELMMVHARPRSSPPQVA 248
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BLAST of mRNA_H-paniculata_contig12327.1470.1 vs. uniprot
Match: D7FZC7_ECTSI (MinC_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC7_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 1.540e-35
Identity = 72/94 (76.60%), Postives = 79/94 (84.04%), Query Frame = 1 
Query:   67 LQGSGALRTAGIVPAAGSSVVLDLGAISQDGSPHGRPAGRASLSGAVRAVKAAGFVPIGVCNTSHDVLKLAAEQGLPEVMMVQARPRA-PPSVA 345
            LQG G L T G+ P AGS VVLDLGA+SQDGSPHGRPAGRASL+G  RAV+AAG VP+GVCN SHDVLK A+EQGLPEVMMV ARPR+ PP VA
Sbjct:    5 LQGPGVLGTTGLFPGAGSPVVLDLGAVSQDGSPHGRPAGRASLAGCSRAVRAAGLVPVGVCNASHDVLKTASEQGLPEVMMVHARPRSSPPQVA 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12327.1470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JAT5_9PHAE3.590e-3972.32MinC_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FZC7_ECTSI1.540e-3576.60MinC_C domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12327contigH-paniculata_contig12327:3684..7328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue1e-30
Seed eggNOG ortholog2880.D7FZC7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Septum formation inhibitor MinC, C-terminal domain
EggNOG OGs2RYK0@2759,COG0850@1
Ec32 ortholog descriptionSeptum formation inhibitor MinC
Ec32 orthologEc-07_001750.1
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size751
Cds size747
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12327.1470.1prot_H-paniculata_contig12327.1470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12327 3684..7326 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928954.1003468-CDS-H-paniculata_contig12327:3683..38361622928954.1003468-CDS-H-paniculata_contig12327:3683..3836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 3684..3836 +
1691480680.2236638-CDS-H-paniculata_contig12327:3683..38361691480680.2236638-CDS-H-paniculata_contig12327:3683..3836Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 3684..3836 +
1622928954.112548-CDS-H-paniculata_contig12327:6049..61961622928954.112548-CDS-H-paniculata_contig12327:6049..6196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 6050..6196 +
1691480680.234689-CDS-H-paniculata_contig12327:6049..61961691480680.234689-CDS-H-paniculata_contig12327:6049..6196Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 6050..6196 +
1622928954.1230993-CDS-H-paniculata_contig12327:6879..73261622928954.1230993-CDS-H-paniculata_contig12327:6879..7326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 6880..7326 +
1691480680.2433755-CDS-H-paniculata_contig12327:6879..73261691480680.2433755-CDS-H-paniculata_contig12327:6879..7326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 6880..7326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12327.1470.1

>prot_H-paniculata_contig12327.1470.1 ID=prot_H-paniculata_contig12327.1470.1|Name=mRNA_H-paniculata_contig12327.1470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
ADGGGGEVIEEERAFEWMSGMLLQGSGALRTAGIVPAAGSSVVLDLGAIS
QDGSPHGRPAGRASLSGAVRAVKAAGFVPIGVCNTSHDVLKLAAEQGLPE
VMMVQARPRAPPSVAPQQRTTTAAGIRASNRKKLQELASSSTPVRPQNTT
SSTDAAQACSSTSNLAAASSRGPPQHIPSMEISPEVAARDTSPRSTGRST
SSIARAIPAEEAGESVPVRRVSSAAPPSIRKVEGELNGTEDGGEEVGMG
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mRNA from alignment at H-paniculata_contig12327:3684..7328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12327.1470.1 ID=mRNA_H-paniculata_contig12327.1470.1|Name=mRNA_H-paniculata_contig12327.1470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3645bp|location=Sequence derived from alignment at H-paniculata_contig12327:3684..7328+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGACGGAGGGGGCGGAGAGGTGATCGAGGAGGAACGGGCATTTGAGTG
GATGAGCGGGATGTTGCTACAGGGGAGCGGGGCTTTAAGAACTGCAGGAA
TAGTGCCGGCAGCCGGCTCATCGGTTGTTCTGGATCTCGGAGCTATTTCC
CAGGTGTTTGTACAATTCAATCCAATTTGTGAAATCTTTTTCAGTAGTGA
CCTCTTTTTCTTCATTTTGCTGAGCGTGAGACGCGCCGACTAAAATTTTC
CTGTGCCTGTACCATCTGAAATGTTCAGAAATTGGTTGCTTCTAGGATTT
GCCCTTGTTGTAGGGATATCCATACATTTGAGGGGGGGTGTTGGGAATGG
CGAGCTAGGTGATATAATTTTTGCGAGACTAAAGCTGTTGGTACTGTTGT
AGTAGAAGACACGTCGAAAACTAGGAGTACCACAACAGTTAACTTCTGGT
GTGTACGAAAACGATAAAGGAGGTGCTCATTTGTCTTTTAACCGTCTACC
GTAGCATTACACGCTGAGGGCTTCACCCCCCGGACGAATTAATATGAATG
CTTGGGGTGCTTTAAAACAAAGTTGTAAAGAACGAACGTCTTATGTTTTG
GCATGTGCGGGCACAGACAGGAAAGAAGTGTTGAGTTCCTATTTATTCGT
TTTTAATCGATAGTATTTGCGCCCCAGTTGTAGATGGTCCCGGGCACATT
TGGAAGAAACGTAATCACGGTGAACTTTCAGGCGAACGCTTTCAGTCTTA
GTCCTCCAAATTTTATGGAATACAATAGCTGAACCTATGTAGGGTATAGG
TGGTCCACGTACCTTATATAGGTCACACAACTTATTCAAATACTGGAGGC
CCTATTCTAAATCCCTATATTTTGAAAAAAAAAAAAGGCATCACCTGAAT
AGTTATATGCGTTATATAGGGCCAATACCTTACATGGGTATACCTTGTAT
AGGGCCACCTACTATATCCATTTGTATTCGTTTTTCAGCTGTGAAATACT
TTCACAGCTACTTCTTTTGGCCAATCTTTACCTTTTTTTTTTTTTTGACA
CGACGTTTGTACGCAATCTGGGTTCGATCGGTAGTACGTTTCGACGAGTT
GTCGTGGGTGACATTCCATCGTTGTTACCTTTTTGCGAGACCTCCACTCC
GTGGTAAAATCCATTACTTTGTTTGGAGAAGAACAGCGGATATCTTCGCG
AATTGAAATCCCAAACTCATGATTCGAGGTAGGCACACAGAGAGGTGCCT
ATCGTGCTTCCTTTTCATGTTGAATTTGCACTCGCATGAATAGGTCAACT
TATATCACGCGCGTCCAGACGTTGTAAGAACATGTGTCTGCTCAGAGCAG
GTGGATTGCCCTTCCGGAACGTTGTTTGATATCTAGAGCAGTGGTTTAAA
ACGATATTCACAAAAAATGTCAAAATAGTAGACGTGGTCGAAGATGCTCA
GTTTCGAACACATTGTGTTCTACAGTAAAGCATTTTCTGTACTCACGCTG
ATCTGGTCATGTCCGTTTGTATCATACACGTGAAAATTTGCTGTCGTTAC
GGTTTGACACGCATCAATCAAGAACGGATGATAGGTTCCGTGAAGGTAGA
TTGTTCGTTGTATGCTTCATCGCGTGTCTGTGCCTACTAGCAGAGGAGCT
TGGGCTACGTACGTCCGTGCAACTCGCGGGACTTTCATATGTTCAAATAT
TTGTTGTTTTATAGTAACACACACGCACGAAGACTGAAAAATCATTTTCT
CCTGTGACCATTAACACGTTGGCGTATTATGTAATGAGGACAAGCTAGAG
ATCGCCCACCTACACTCGTTTCACAAATTCATCATTTCGTATTTCCCCCC
CCGAAAATGAAGCGTCGGCGAAAAAAAGTCTTCGTTGGTAAACTTTGATT
CAGTGCTGTATGGCTCATGGTGAGCTCCAGGTCCCAAACCCCAGTCCACC
TGCACCACCTTCGCGATACACAACGAACTCCTTCCCAAATGATCGAACTT
TCGCGAGTTTTGCGAAAGCTGACGGACTGTGAACAGGAATTCATTTTGTA
GCGAGACCTAGATGCAGGTAGACTGCGAGCCGAGGCCTGCAGCTCACTAT
GAGTCATGCAGGGCCAAGTCGACATTCGCGAACATCCTGATCAAGCAGTA
GCACACTCCAAGTTGGTCGATACACATCAATTTTCAACATAGTTCAGGGT
GCGAGGATAGAGTCAGACAGCCAGGAAATCAATAGACGAAAGCTCGCTGG
ATCACACTTGAGCTGGCACAACCATACCGTCATTTTCCTTTTTCATACTG
TGTAATTATCTCAACCTGCGTTCTTTGCCTTCTCCCATGGCCACCTTGTG
ACCTTTGCTGGGATAGGATGGTTCCCCTCACGGTCGACCAGCGGGACGCG
CGAGCTTATCAGGGGCCGTGCGGGCTGTGAAAGCGGCGGGATTCGTGCCG
ATTGGGGTTTGCAACACCAGCCACGATGTGCTCAAGCTGGCGGCGGAGCA
GGGTTTACCAGAGGTACATCTGGCACTGTAATCGTTTCTGCGAATGTCAG
TTTTACATGGAGAGCAATTATAGTATCGGTGATGCTGTACCTTGCTGCTG
CTGTGACTGGCGGCGTATTCAGGCTGGCGTTCCAGTTGCCCTGTTGCCAC
GTTGTATTATTAAATTATTAAGTGTTCTCTCTCTCTCTCTCTCTCTCTTA
CACACACACATCTCTGCCCGACGTGGATCTAGGGGATGGAAAATGGCCTG
AAACGGCGACGACTGATTGAAACCAAGATAGGGTACACATTTTTGAGCCA
CACGCCGGGAAGGCAGGAAGGAGCGATTGGCCATCGTGGCCCATCCTTAC
AGGAATGAGGCTTCTTCGTCGTGCTTTCCAGAATGGATGGTCAATGTTCC
AACAGCTTAGGCATTCATAATCATAAGTACCTCGCCGCCCGTTTGTTGCT
TTTCTGATTTTATTGTTGATTTTATTCAGCCTCGATTCCGTTAAGACCAC
ATAACATGAGCACAAATACAAGAATTTTAGTGTATTGCTGGATGCCGTGA
CAGGTACGAAAGCAGTTGACTTGTGAAGAGAATTTCGTGAATTCGGTGGG
TATTCTGTTTGAGGTGCCCACTTTTGCGTTATGTCATGTCTACGCATAAT
ACCCACTCAAGTTACCCTCCCGCCCCATACTCCATTTGACCAACAGGTAA
TGATGGTTCAAGCTCGGCCAAGAGCACCGCCGTCAGTCGCGCCTCAACAA
AGGACAACCACCGCAGCGGGTATCCGAGCATCAAATCGAAAAAAGTTACA
AGAACTCGCTTCTTCCTCAACTCCTGTTCGCCCCCAAAACACGACATCAT
CGACCGATGCTGCTCAAGCGTGCTCATCCACCTCGAATCTCGCCGCCGCT
TCCTCCAGAGGTCCGCCGCAACATATTCCCTCGATGGAAATTTCCCCCGA
AGTTGCCGCGCGAGATACTTCACCGAGATCGACAGGCCGAAGTACTAGCA
GCATCGCTAGGGCAATTCCAGCGGAGGAGGCGGGGGAATCGGTGCCGGTT
CGACGAGTGTCGTCCGCCGCGCCCCCGTCAATTAGGAAAGTCGAGGGAGA
GTTGAATGGGACAGAGGATGGTGGGGAAGAGGTGGGAATGGGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig12327:3684..7328+

>mRNA_H-paniculata_contig12327.1470.1 ID=mRNA_H-paniculata_contig12327.1470.1|Name=mRNA_H-paniculata_contig12327.1470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig12327:3684..7328+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGACGGAGGGGGCGGAGAGGTGATCGAGGAGGAACGGGCATTTGAGTG
GATGAGCGGGATGTTGCTACAGGGGAGCGGGGCTTTAAGAACTGCAGGAA
TAGTGCCGGCAGCCGGCTCATCGGTTGTTCTGGATCTCGGAGCTATTTCC
CAGGCGGACGGAGGGGGCGGAGAGGTGATCGAGGAGGAACGGGCATTTGA
GTGGATGAGCGGGATGTTGCTACAGGGGAGCGGGGCTTTAAGAACTGCAG
GAATAGTGCCGGCAGCCGGCTCATCGGTTGTTCTGGATCTCGGAGCTATT
TCCCAGGATGGTTCCCCTCACGGTCGACCAGCGGGACGCGCGAGCTTATC
AGGGGCCGTGCGGGCTGTGAAAGCGGCGGGATTCGTGCCGATTGGGGTTT
GCAACACCAGCCACGATGTGCTCAAGCTGGCGGCGGAGCAGGGTTTACCA
GAGGATGGTTCCCCTCACGGTCGACCAGCGGGACGCGCGAGCTTATCAGG
GGCCGTGCGGGCTGTGAAAGCGGCGGGATTCGTGCCGATTGGGGTTTGCA
ACACCAGCCACGATGTGCTCAAGCTGGCGGCGGAGCAGGGTTTACCAGAG
GTAATGATGGTTCAAGCTCGGCCAAGAGCACCGCCGTCAGTCGCGCCTCA
ACAAAGGACAACCACCGCAGCGGGTATCCGAGCATCAAATCGAAAAAAGT
TACAAGAACTCGCTTCTTCCTCAACTCCTGTTCGCCCCCAAAACACGACA
TCATCGACCGATGCTGCTCAAGCGTGCTCATCCACCTCGAATCTCGCCGC
CGCTTCCTCCAGAGGTCCGCCGCAACATATTCCCTCGATGGAAATTTCCC
CCGAAGTTGCCGCGCGAGATACTTCACCGAGATCGACAGGCCGAAGTACT
AGCAGCATCGCTAGGGCAATTCCAGCGGAGGAGGCGGGGGAATCGGTGCC
GGTTCGACGAGTGTCGTCCGCCGCGCCCCCGTCAATTAGGAAAGTCGAGG
GAGAGTTGAATGGGACAGAGGATGGTGGGGAAGAGGTGGGAATGGGGGTA
ATGATGGTTCAAGCTCGGCCAAGAGCACCGCCGTCAGTCGCGCCTCAACA
AAGGACAACCACCGCAGCGGGTATCCGAGCATCAAATCGAAAAAAGTTAC
AAGAACTCGCTTCTTCCTCAACTCCTGTTCGCCCCCAAAACACGACATCA
TCGACCGATGCTGCTCAAGCGTGCTCATCCACCTCGAATCTCGCCGCCGC
TTCCTCCAGAGGTCCGCCGCAACATATTCCCTCGATGGAAATTTCCCCCG
AAGTTGCCGCGCGAGATACTTCACCGAGATCGACAGGCCGAAGTACTAGC
AGCATCGCTAGGGCAATTCCAGCGGAGGAGGCGGGGGAATCGGTGCCGGT
TCGACGAGTGTCGTCCGCCGCGCCCCCGTCAATTAGGAAAGTCGAGGGAG
AGTTGAATGGGACAGAGGATGGTGGGGAAGAGGTGGGAATGGGG
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