mRNA_H-paniculata_contig12327.1469.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12327.1469.1
Unique NamemRNA_H-paniculata_contig12327.1469.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12327.1469.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12327contigH-paniculata_contig12327:1302..3681 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size462
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12327.1469.1prot_H-paniculata_contig12327.1469.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12327 1302..3680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928954.0176718-CDS-H-paniculata_contig12327:1301..14161622928954.0176718-CDS-H-paniculata_contig12327:1301..1416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 1302..1416 +
1691480680.1978972-CDS-H-paniculata_contig12327:1301..14161691480680.1978972-CDS-H-paniculata_contig12327:1301..1416Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 1302..1416 +
1622928954.0328882-CDS-H-paniculata_contig12327:1743..19171622928954.0328882-CDS-H-paniculata_contig12327:1743..1917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 1744..1917 +
1691480680.2061334-CDS-H-paniculata_contig12327:1743..19171691480680.2061334-CDS-H-paniculata_contig12327:1743..1917Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 1744..1917 +
1622928954.055446-CDS-H-paniculata_contig12327:3510..36801622928954.055446-CDS-H-paniculata_contig12327:3510..3680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 3511..3680 +
1691480680.2156844-CDS-H-paniculata_contig12327:3510..36801691480680.2156844-CDS-H-paniculata_contig12327:3510..3680Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12327 3511..3680 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12327.1469.1

>prot_H-paniculata_contig12327.1469.1 ID=prot_H-paniculata_contig12327.1469.1|Name=mRNA_H-paniculata_contig12327.1469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
SQVPSRTPRCSLFPRVNMWPVIYARVPRCTCSTWILSKGQLKTITNSTTL
RRRLAGVADGAEESSNIDGPSRTGRSYLDHWAGIRGGGAGARVDCTADIK
SATSPEHRQQPITTFFGRTYLVPTVRIPAFPHPVAPINNGSGGGAEGGAG
RIQ
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mRNA from alignment at H-paniculata_contig12327:1302..3681+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12327.1469.1 ID=mRNA_H-paniculata_contig12327.1469.1|Name=mRNA_H-paniculata_contig12327.1469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2380bp|location=Sequence derived from alignment at H-paniculata_contig12327:1302..3681+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCAGGTCCCCTCTCGAACACCGCGGTGTTCCCTCTTTCCGCGCGTCAA
CATGTGGCCGGTGATATATGCTCGTGTTCCTCGTTGTACCTGTTCAACAT
GGATACTATCTAAAGGTAGGTCTTTCCGGAAATTGGTTTCCTACACGGTA
ACTTCTCGTTGGCAAAAGCATGGGTCAGAGCAATCGTCCAGGTCCACCTC
GAACCACAAGCTAAATTGACCACACTGGAGGATGTTTATTCGATCGTTCC
TATGATGAAGATCCCTCTTTCTTGACAGTGCTTGTTTGGTCTGAAATTAG
CGCAGAGCACCCCTCGTAGATTTCTGCAAAACACTCTGGCAGCACACCGC
TAGCGTTGAGTCTGCAGGGTGAAAATGTACTCCACTGTGTACCACTTACT
CTATGACCGAACAAGCGACCTCGTACACCATATGAATAACAGGCCAGCTC
AAGACCATCACTAACAGCACCACGCTTCGGCGACGATTAGCTGGCGTAGC
GGATGGAGCAGAGGAAAGTAGCAACATAGATGGCCCTTCTCGTACTGGAA
GGAGCTATCTGGATCACTGGGCGGGCATTCGGGGGGGCGGGGCGGGCGCA
CGAGTCGATTGTACAGGTAAGATTACGGTTCCCACGTTAGATAGCACCCC
CCACTCGCCGACTTGATTGACAGTCCGACATACTGATGGTTGAACAACGG
TTCCATCTGATTTTTCTATATCAATTCCGCTGTATAAGGAGTTCAATTGC
GTCGCGCCCAAAGCGTTTACTCGTTCGAGAGCCAGGTAGTTGCGTGACAT
ATTTTAGTAGGGTATTGTGGAGCATTTGGGTTTTTATTCTGTTGTTGCTG
AAGTGGTCATCCAAGGTCGGAACCAGCGAGAAAATTGTTCTAATAATGTG
ACAAAACGCCACTAGTTTAACAGTGCGTGTACGGGTTTAAGAGAGGGTAA
TGATAAGCCGAAAAATCCTCTCTTAGTTCGGATCATGTTGCAAGCACTAC
CCGCTGCGCAGGGCATCGTGTTGTTCGTGTTGTGGTCTCCAGACAGGACA
ATATCATCATGTTGATACAACAATTAGAGTGCTCACATATATATATTTTT
TCATCACATCAACTTTGATTTTTCTGTCAAGTGGATAGGGGTTTGACCTG
GGCAGCCGAAAAAACCCCTTAAGTCTGAAAAATCGGTGACGGCAATTTAA
CCTTTCTTAAATCCTGATTTCTCTTGAATAGACTGCTCTTCAATTCATGT
ACCCACTGTATTGAAAACCGTGGTTCAGAAATTCGAAGGACATCAGGAGC
TTTCTTCGCCACGATTGATGTCATTACAGTCCAGCCCTCTCTTAGCTCTG
ACCGTATGTACACTTGAATACAAATTCTTGTAATAATAAAATATTGCTGG
TGGACAGGGTAATGGCAAAGCTCAAAACGCAGTTCATCGTCATTTTGGTT
CGCGGCCGGTATCATAATTCAATACCCCCAGGTACGCCATGTTCTAACGT
TTGGGGAACGCTAACCCCCGAATTGCCCTACATCAAATCATCATTTCGAA
GACGACTGGGGACCGAATGGACAAGAGAGAGCGGGAGGAATGCGTAACCC
GTAAAATCAATTCACCTATCCATTATTCTACCGAATACGCTATCCCTTCG
TTATCCTAGTTTTGCTGATGAGTTTGTATATATATATTAAGCCCAGAGCT
TTCGTAGGCTAAACAATCTCAGCGTGTAGAACTGTCATGGATTGTGATAG
CGAAAGGCAGATGAAGTACATGATCGACGGCATGTACGCACTCTTAGGTT
ATGATATCTATTACGTCCGTTTCTACATGCGAGTGATACAAGTATACTCC
TTAACGTTTAACGCGACGGTCAATGCTACCCTCCCCGACCCCCCGCCCGC
CCCCTCCCTGTCTATATGAGAAGCAGACAAGAATATCTGAGTAATCCGAG
GAAATTGAAGGTGCAATAGAGAGGCCCTTGGATCCTGGGACTGCGTATTG
AAGGAGGTTTCGATTCCAGGAGATGAAAAAATGAACTGAGAAGGCGAGGA
CTGAAGCAGATAGGATACATAATCTTTCTGAAAAACGTTTGGCGACGTAG
GAAAAAGATCGATTAACCATCAGGGATCGCTCAATGGTCTGACAGCTACA
ACATGCTAAACATGAGTCCGCCCCGCCCCTCCCCGCCACCAACCTGCCTG
TCCCCTCAGCGGATATAAAAAGCGCCACTTCACCAGAGCACCGGCAACAA
CCCATCACCACATTTTTCGGTCGGACCTACCTAGTGCCCACGGTGCGAAT
ACCAGCCTTCCCGCATCCGGTTGCGCCGATAAATAATGGTAGTGGTGGGG
GTGCAGAGGGGGGAGCCGGGCGGATACAGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12327:1302..3681+

>mRNA_H-paniculata_contig12327.1469.1 ID=mRNA_H-paniculata_contig12327.1469.1|Name=mRNA_H-paniculata_contig12327.1469.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig12327:1302..3681+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCGCAGGTCCCCTCTCGAACACCGCGGTGTTCCCTCTTTCCGCGCGTCAA
CATGTGGCCGGTGATATATGCTCGTGTTCCTCGTTGTACCTGTTCAACAT
GGATACTATCTAAAGTCGCAGGTCCCCTCTCGAACACCGCGGTGTTCCCT
CTTTCCGCGCGTCAACATGTGGCCGGTGATATATGCTCGTGTTCCTCGTT
GTACCTGTTCAACATGGATACTATCTAAAGGCCAGCTCAAGACCATCACT
AACAGCACCACGCTTCGGCGACGATTAGCTGGCGTAGCGGATGGAGCAGA
GGAAAGTAGCAACATAGATGGCCCTTCTCGTACTGGAAGGAGCTATCTGG
ATCACTGGGCGGGCATTCGGGGGGGCGGGGCGGGCGCACGAGTCGATTGT
ACAGGCCAGCTCAAGACCATCACTAACAGCACCACGCTTCGGCGACGATT
AGCTGGCGTAGCGGATGGAGCAGAGGAAAGTAGCAACATAGATGGCCCTT
CTCGTACTGGAAGGAGCTATCTGGATCACTGGGCGGGCATTCGGGGGGGC
GGGGCGGGCGCACGAGTCGATTGTACAGCGGATATAAAAAGCGCCACTTC
ACCAGAGCACCGGCAACAACCCATCACCACATTTTTCGGTCGGACCTACC
TAGTGCCCACGGTGCGAATACCAGCCTTCCCGCATCCGGTTGCGCCGATA
AATAATGGTAGTGGTGGGGGTGCAGAGGGGGGAGCCGGGCGGATACAGCG
GATATAAAAAGCGCCACTTCACCAGAGCACCGGCAACAACCCATCACCAC
ATTTTTCGGTCGGACCTACCTAGTGCCCACGGTGCGAATACCAGCCTTCC
CGCATCCGGTTGCGCCGATAAATAATGGTAGTGGTGGGGGTGCAGAGGGG
GGAGCCGGGCGGATACAG
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