mRNA_H-paniculata_contig12314.1464.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig12314.1464.1
Unique Name	mRNA_H-paniculata_contig12314.1464.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig12314.1464.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig12314.1464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0


Match Name	E-value	Identity	Description

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig12314	contig	H-paniculata_contig12314:2077..6654 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-23_000500.1
Exons	2
Model size	879
Cds size	756
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig12314.1464.1	prot_H-paniculata_contig12314.1464.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig12314 2200..6654 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928953.3522747-UTR-H-paniculata_contig12314:2076..2199	1622928953.3522747-UTR-H-paniculata_contig12314:2076..2199	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig12314 2077..2199 +
1691480679.9693034-UTR-H-paniculata_contig12314:2076..2199	1691480679.9693034-UTR-H-paniculata_contig12314:2076..2199	Halopteris paniculata Hal_grac_a_UBK monoicous	UTR	H-paniculata_contig12314 2077..2199 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928953.3719547-CDS-H-paniculata_contig12314:2199..2301	1622928953.3719547-CDS-H-paniculata_contig12314:2199..2301	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12314 2200..2301 +
1691480679.9778829-CDS-H-paniculata_contig12314:2199..2301	1691480679.9778829-CDS-H-paniculata_contig12314:2199..2301	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12314 2200..2301 +
1622928953.3817644-CDS-H-paniculata_contig12314:6000..6654	1622928953.3817644-CDS-H-paniculata_contig12314:6000..6654	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12314 6001..6654 +
1691480679.9855204-CDS-H-paniculata_contig12314:6000..6654	1691480679.9855204-CDS-H-paniculata_contig12314:6000..6654	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig12314 6001..6654 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig12314:2077..6654+
coding sequence from alignment at H-paniculata_contig12314:2077..6654+

protein sequence of mRNA_H-paniculata_contig12314.1464.1

>prot_H-paniculata_contig12314.1464.1 ID=prot_H-paniculata_contig12314.1464.1|Name=mRNA_H-paniculata_contig12314.1464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=252bp
MATRGRGGGARMITRKPAAKRKRQCELGTSCPYQHEYQHQQEFGHDAAAK
DDGRDVKQRTKVTLAEHTAGALKGTGHRGRKVAVAADKRRAKRAQEMIGD
QEHLDGRVQDVREAQRVRWVTHMQQKQGRPTGAIEGSNRGQGKEVRSRAT
AIGKGQARPSQQSRPLSTTTAIPSPSIRRCDNRPEGSFIAVGEATSVVAD
TKQVCSRAVSVLGDTGFGCRDFGDGEIAQGYNSRGDYTDGKLALRFYAVS
LS

mRNA from alignment at H-paniculata_contig12314:2077..6654+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig12314.1464.1 ID=mRNA_H-paniculata_contig12314.1464.1|Name=mRNA_H-paniculata_contig12314.1464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4578bp|location=Sequence derived from alignment at H-paniculata_contig12314:2077..6654+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAAATAGCAAGTTTCCTGTTGAACTGTAGAGCTTGGGTGGAAGTGCCAT
TTGTCCGAACACATGGTGCAGAAGACCAAGTGAACTGTGCAAACCTTTTA
CTAGGTGGTGAGATGGTCTGAGTATGGCGACACGTGGGAGAGGTGGAGGT
GCTCGGATGATCACCCGAAAACCAGCGGCTAAACGAAAACGGCAGTGCGA
GCTCGGAACGTCATGCCCATATCAGGTATCACTGACTACTGTACTCACTG
AAAATGATGAGATTTGGTGGAAGGGTGGCCGAGGGTACTGATTGTCTATT
TTTGCCTTGCCTCGATATATAGTGTCGGTCTCATATTGTTGATTTACTTA
GCACAACCTCAACTTGACGATTTTTATCCCCTTGACAGATAGAAAAGTAG
TTGACGGAGGGAACAAATTTTTGCAAGAAAGCTGTCAATATCTCACCTCG
TTGCCAATTACGAATTACGAATTACGTTATCACCCATGTTGTTATTTTCC
GAGTGATATGTACGGTGCGACCGCTTGTCCAACGGTGAGCCTTGGGGGCG
ATTCTCTTAAAACCGGACTAACGGAATAACCAACTTCAGGGTATTCTTTC
ATAAGGCTCGTTAGGCCGATCAACCACATTAGTGCCTCCTCTAGAGCGGC
CGACTGAGCTTGGGATAAGTGGCGTCGCGGCCGTGGTGACATGCCGTTTC
GGCATGGTACTGTAGTATCTTCGTCTTGCTCGCATGCAATGCATAGCGGC
CTGATACATGTGATCTGCTTATTCGCAGCGGGCCTACGCTGGCAGACAGG
TGCGCCATTCGTGTAGGAGATGTCCACTGTGAAAGGGGTTTACGCTGCCG
TAAACAATAAACGTCATCAAGACTGCAGCGGCACAAGCACCATCATCACC
AGTAGTAAGTAGCACGCGGCAGGGCAGGTTAAGTGCGAGCGATGCCCTCT
GCCTCCTCTCCCTCCTGGAATAAGGAAGGTCTCTCCGTCGAGGGAGTTTA
CATTGTGATCTCACTCTATTTTCCTGTCGGCACTATTTTTCCGTGTCACC
GTCTGTATTTACGACACCTGCTGGATACAACTTATAGCCGAATCTTGCTG
CAGTACGTTGATTTTTTTGTGAAGAGCGAGCGTCAGAGTCGGATTGGCTA
GACTTGATATACCGTCACCCCCATCGAGATTCAAGAATTAATTACTGTGA
CCAGAGTATTGCCCAGGACTACGGCTATATGAACCCTCGTATTAGCGGTA
ACTGGTATTCACCTGCAATATTTTGTCGCATGTTGAATCCTGAATTTTAT
CGTCTGCTGAGCTTGATAGACGGGTTGACTGGACCTACCGCCATAGAGAA
TCAAGAGTAAGTGAACATAATAAATGTGTTGCCCACGACTAGGGCTTCAG
ATAACCCGGCTACCCATGTCCCTGTTTGTGCGGACCATACCTCCTACACT
TCGGGTAAACAAGGAACGCGATGAAGACAGGATTCTTAAAAAACAAGATG
GAGCCAGAAAAAAAAAACTTGAAAAAAGAAAAAGGAACACTTGGCGCAGC
GCTGCCCTTTTTGCTCGAACTATTAATAGTATCCTTTACGCCAATACAGA
ATGCCTTGGACAACCCGCAGCCCCAAGGGACTCTTCGATTCTGTGGCAAA
ACGTACGTCTATCCAATAGCTCAGACCTTCAAGTCACAAGAAGTTTTTGT
TTTCAGTCTTATATTTAATCGTTGTTTCAGGGACTTGAAATACTTTCTTA
ATTCACATGTTTTGGGTGCTGAACGGTACAGATTGCACTAACTGTACGGT
ACTTGTACGGTACGGTACCCAGGCTCCGTGCCATTGAACGGCGTGGTAAC
GTGTTTTCGCGGAATTTGGGGATTTTGACGGTTAACGTACGGTACGGTAC
GGCACATTTTATCGCGATAAAACCGAGGCACGGTAATTTGACTTTCGAAG
GAAACTTGCTGGTACGCAGCCTTTCCTGCAAAAACCTCAAGCAGACCCAG
ATTTGGATTCGGTATTTCATCGGTCCTGTGGCGTACGCCATGTAGGTGCT
GAAAACTCAAGGGTGCTGGGACACCTACTGATATCGGAGTCAAGTTGTCA
CCACCCCGTTGTGCAGCGTTTCTTTGTGCGTATCGCTTAAAATGTTGCTA
ATAGTGGGGGAAACGTGACACACTGATAAGCAGACGGACAGACGGGATTA
TTTTTTCGGGTCCCTTTCAGCAATCTTTCATGCCTAGTTGATTTTGCTAT
AATACGACAGGGAAGATGAACACTCGTTTCACTCGGTTTTCGCCTTCATC
TTACGGGCAAAGTCCGTCCGTGCAGAGATTTATTTCTTTAGTCGTATTTT
AATCGTGTTTCGGAATAAGAACTTAATGTAACAATAAATGTGGAGTGTTG
CAGTCGTCGCTCGTGGAACCATGCCAATCCCCTGCCCATGCTGTATGTAT
CATCTGTACTGGGCTAACTGAGCAATAGGGGCTCCTTATCCACGTGGTCG
TATCATGGATGTGTTTTTCCCTGTTCCTCGGGTGGGGATCAGGTCAGGAT
TCGTAAGACCGACCTTGTTACTACTCTGCTGCTTGCCTCGGGTGTCTAGT
AGAATCAAATTACATGGTGTGCCATAACAACAGCCCCATGCTGCCCCTCT
GCCTGTTGAAAGTCAAATTTAGGACAGGGGATCTTGACCTCAAGCAAGAT
ACACAGCGATCCAGGAAATTAGACCTCAAGCAACGTAAAAAATGATCCAG
GAAAGTAGACGAAGACGATGATATTTGCAAATACGACTCTGATGATGGGT
TAATATCATCACTATGAATAAGAGATAAAAATCCAGAAGAGTTAACTAGG
GAAGGTTCAAGGATGCGGTGGAGAAGCATTCGAATCATTGGGTTGCGAAA
AGAAGGATGCAATACTTGGAAGAGATCGAAATTGGCCGGTGCACGCAAGG
ATTGAAGTCGACAAGGTAATTGAAATATTTTTGAGCCACATACGGCAACG
TAGGAAAGAGCGATTGACTATCGGAAGTCGCTCTCATTAAAACAAACCTC
CTGTCCTACCGACAACGCGTGGTCAATGATCTCGCAACGACGACATGGAT
ACGCCCCCCCCCGCCTCCCTCTACTGAGTATATCCGAAGGTACACTTGCA
GGCAATTTGCAAGGGTGGCGCTGGGAGCTGTTAAGCTGACCCAAAAAACA
CGCTGTGCTAGAGGATGTAGGTGGTAGATCATGATTGGAAGATCCGCTTG
AGGGCAAGAAAGGCTTTAGAACACTGAAATGTGCAGAAGTCCAGCGGTCA
GAGAAGAGTGAGGCGGTAGGGGTGGGGTTGACTCGCTACGCCCAATATGA
TTATTCCTCAACCTAGGGATTGCCAGAATTCTCGAATTGTTCCACCGCGT
TTCCTACGTTTATTCCGCCGCGTGTATCTGGAACAGTATCTACTACAGAC
AACATTCACTTTTTGATCTATGAGTTATACTACGAAGTTTTGACTAGATC
AACACTGTGTATCTATTTCTCAACACCCTCTGCCTGTCAAAGGCGGGTAA
TGCACCCATACTCGCGAGTGACACCTTATCACCAGCGGAAATGCCTAACA
TCACTCCTTAGCCTGATTATTACTCCCCAGTCATTTGTGTCCGACTCTCA
GCCATTATAACCAGCTGGCGATCGTGCCCTGGGGCATATCCACACTTATC
CAGACCAAAGACTTGCAACACGAGTTCTTATCAAGTAAAACATAAAAACG
CAGTGCGACTGAAAATCAACTAGAGACCCCGAGTCCGAGTTACAACACTG
AATAATGACACGTTGTCACGAAATAAGGACAATTAATATGTTAAAGTTGT
TCAATTCGTGGCGTCGCGGCAAGCTGATCAATATTTCGCGAATTGTCTCA
TGTGTCATTTATCCAACACCGCAGCACGAGTATCAGCACCAACAGGAGTT
TGGGCACGATGCTGCCGCGAAAGACGACGGTCGAGACGTCAAGCAACGGA
CGAAAGTAACGCTAGCTGAGCACACCGCTGGGGCGCTTAAGGGAACAGGT
CATCGAGGGCGGAAGGTTGCGGTTGCTGCCGACAAACGCAGGGCCAAGCG
TGCACAAGAAATGATCGGTGACCAAGAGCATCTCGATGGTAGGGTACAAG
ACGTGCGCGAAGCTCAACGAGTTCGCTGGGTTACGCATATGCAGCAAAAG
CAAGGGCGGCCAACAGGAGCAATAGAAGGCAGCAATCGGGGGCAGGGAAA
GGAGGTGCGGTCGAGAGCAACCGCGATAGGCAAGGGTCAGGCTCGACCGT
CTCAGCAATCGCGACCTTTGTCAACAACAACGGCAATCCCCTCGCCCTCC
ATTCGACGATGCGATAATCGACCCGAGGGCAGTTTCATTGCTGTTGGCGA
AGCTACTAGCGTTGTTGCAGATACCAAACAGGTGTGTTCGAGGGCGGTGT
CTGTGTTGGGAGATACGGGATTTGGCTGTCGAGACTTTGGCGACGGAGAA
ATAGCTCAAGGATACAATTCCCGTGGAGATTATACCGATGGGAAGCTTGC
ACTTCGTTTTTATGCTGTCAGTCTGTCG

Coding sequence (CDS) from alignment at H-paniculata_contig12314:2077..6654+

>mRNA_H-paniculata_contig12314.1464.1 ID=mRNA_H-paniculata_contig12314.1464.1|Name=mRNA_H-paniculata_contig12314.1464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1512bp|location=Sequence derived from alignment at H-paniculata_contig12314:2077..6654+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCGACACGTGGGAGAGGTGGAGGTGCTCGGATGATCACCCGAAAACC
AGCGGCTAAACGAAAACGGCAGTGCGAGCTCGGAACGTCATGCCCATATC
AGATGGCGACACGTGGGAGAGGTGGAGGTGCTCGGATGATCACCCGAAAA
CCAGCGGCTAAACGAAAACGGCAGTGCGAGCTCGGAACGTCATGCCCATA
TCAGCACGAGTATCAGCACCAACAGGAGTTTGGGCACGATGCTGCCGCGA
AAGACGACGGTCGAGACGTCAAGCAACGGACGAAAGTAACGCTAGCTGAG
CACACCGCTGGGGCGCTTAAGGGAACAGGTCATCGAGGGCGGAAGGTTGC
GGTTGCTGCCGACAAACGCAGGGCCAAGCGTGCACAAGAAATGATCGGTG
ACCAAGAGCATCTCGATGGTAGGGTACAAGACGTGCGCGAAGCTCAACGA
GTTCGCTGGGTTACGCATATGCAGCAAAAGCAAGGGCGGCCAACAGGAGC
AATAGAAGGCAGCAATCGGGGGCAGGGAAAGGAGGTGCGGTCGAGAGCAA
CCGCGATAGGCAAGGGTCAGGCTCGACCGTCTCAGCAATCGCGACCTTTG
TCAACAACAACGGCAATCCCCTCGCCCTCCATTCGACGATGCGATAATCG
ACCCGAGGGCAGTTTCATTGCTGTTGGCGAAGCTACTAGCGTTGTTGCAG
ATACCAAACAGGTGTGTTCGAGGGCGGTGTCTGTGTTGGGAGATACGGGA
TTTGGCTGTCGAGACTTTGGCGACGGAGAAATAGCTCAAGGATACAATTC
CCGTGGAGATTATACCGATGGGAAGCTTGCACTTCGTTTTTATGCTGTCA
GTCTGTCGCACGAGTATCAGCACCAACAGGAGTTTGGGCACGATGCTGCC
GCGAAAGACGACGGTCGAGACGTCAAGCAACGGACGAAAGTAACGCTAGC
TGAGCACACCGCTGGGGCGCTTAAGGGAACAGGTCATCGAGGGCGGAAGG
TTGCGGTTGCTGCCGACAAACGCAGGGCCAAGCGTGCACAAGAAATGATC
GGTGACCAAGAGCATCTCGATGGTAGGGTACAAGACGTGCGCGAAGCTCA
ACGAGTTCGCTGGGTTACGCATATGCAGCAAAAGCAAGGGCGGCCAACAG
GAGCAATAGAAGGCAGCAATCGGGGGCAGGGAAAGGAGGTGCGGTCGAGA
GCAACCGCGATAGGCAAGGGTCAGGCTCGACCGTCTCAGCAATCGCGACC
TTTGTCAACAACAACGGCAATCCCCTCGCCCTCCATTCGACGATGCGATA
ATCGACCCGAGGGCAGTTTCATTGCTGTTGGCGAAGCTACTAGCGTTGTT
GCAGATACCAAACAGGTGTGTTCGAGGGCGGTGTCTGTGTTGGGAGATAC
GGGATTTGGCTGTCGAGACTTTGGCGACGGAGAAATAGCTCAAGGATACA
ATTCCCGTGGAGATTATACCGATGGGAAGCTTGCACTTCGTTTTTATGCT
GTCAGTCTGTCG