mRNA_H-paniculata_contig12273.1448.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12273.1448.1
Unique NamemRNA_H-paniculata_contig12273.1448.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: D8LJA2_ECTSI (Mgm1 homolog, dynamin-related GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJA2_ECTSI)

HSP 1 Score: 441 bits (1135), Expect = 5.830e-146
Identity = 219/264 (82.95%), Postives = 237/264 (89.77%), Query Frame = 1 
Query:    1 VMINRQVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGALDKINHFAPDVMAVSR 792
            + + +QVE+FRPVVETCRNLCCNSLLNIAVSLV EVAPQYPRL+QAF+ IIESTVP MAE LQPELDQLFDKEKNPFTENQDL+EAINQVRFERFDRVLHQVLVEAGDGPP+GGDASDVTPLK WVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVT+KRVVDNACMLLE SF GQVV+RLE QLL LTQ +++EE +      AAA   G GWQQPRL IFNEDAVLVEKRSFLLMRQQR+K AL KI +FAPDV+AVS+
Sbjct:  457 IFMLQQVEKFRPVVETCRNLCCNSLLNIAVSLVSEVAPQYPRLQQAFQGIIESTVPNMAEELQPELDQLFDKEKNPFTENQDLVEAINQVRFERFDRVLHQVLVEAGDGPPNGGDASDVTPLKEWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTSKRVVDNACMLLETSFFGQVVDRLETQLLALTQAITQEEGQDKAEAKAAAGQEGMGWQQPRLGIFNEDAVLVEKRSFLLMRQQRLKAALGKIENFAPDVLAVSK 720
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: A0A836CBT5_9STRA (Mgm1-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT5_9STRA)

HSP 1 Score: 267 bits (683), Expect = 1.120e-79
Identity = 144/268 (53.73%), Postives = 180/268 (67.16%), Query Frame = 1 
Query:    1 VMINRQVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDA----SDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGALDKINHFAPDVMAVSR 792
            + + +QVERFRP VE CR+    S+L +   L   +APQYP L +  + ++E TV E  E+L PELD +FDKE+NPFTENQDL+EAIN+VRFERFDRV+ QVL+EAGD PP         S++  L +WV++NLGQW+R++HGANPTSKVEDMS ILQAYWRVT+KRV DNACMLLEASFL  V + LEA LL+  Q L           A AAA               EDA +VE+R+ L  R+ R+  ALD+I   APDV+A SR
Sbjct:  453 IFMLQQVERFRPAVEACRSEIYASVLGVGRGLAQAIAPQYPLLVETMQSLVEQTVEEATEALLPELDMVFDKERNPFTENQDLVEAINRVRFERFDRVMQQVLLEAGDAPPPAEKGAPKGSELNSLHDWVSFNLGQWYRYSHGANPTSKVEDMSAILQAYWRVTSKRVCDNACMLLEASFLAAVPDALEAALLSHAQTLDAR--------ALAAA-------------LQEDAAIVERRALLESRRDRVAAALDRIAAVAPDVVATSR 699
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: D7FR39_ECTSI (Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR39_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 5.280e-43
Identity = 91/257 (35.41%), Postives = 141/257 (54.86%), Query Frame = 1 
Query:   13 RQVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGALDKINHFAPDVMA 783
            + VE +RP VE+CR+   N+ L +A  LV  +A Q+PRL  A    + S V ++AE +   +D++F KE +PFT N+ ++E IN +RF  FD+ +   + EAG+ P       ++  LK  V   L +W+   HG    + VEDM T+LQAYW V  KR+VDN CM +E  F+ +++ ++E++L  LT   SE E+                       +F ED  +VEKR  L  ++QR+   L+ +   APD++A
Sbjct:  468 QNVETWRPAVESCRSQAANAALTVASLLVETLALQFPRLCSAVRDALASLVEQLAEEVSVRIDEIFQKESDPFTTNEGMLEVINTIRFRHFDKAVEDAMDEAGESP------ENMEALKGAVMEKLSEWYMRNHGVGTMANVEDMCTLLQAYWNVATKRLVDNVCMTMEQDFVVKLLGKVESELFLLTNRFSEVEE-----------------------LFVEDTSVVEKRRSLQAKKQRLLKGLETLMRMAPDLVA 695
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: A0A836CJ76_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ76_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.300e-34
Identity = 79/251 (31.47%), Postives = 130/251 (51.79%), Query Frame = 1 
Query:   13 RQVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGALDKINHF 765
            + VE +RP VE CR+   N+ L+IA  L+  +A Q+PRL  A    +   V ++A+ +   ++++F KE +PFT N+ +++ IN +RF  FD  L + L  AG+ P      ++   L   +  +LG W+   HG    + VEDM T+LQAYW V  KR+VDN CM +E  F+ +++   E++L  L   L   E+                       +F EDA ++E+R  L  ++ R+   ++ +  F
Sbjct:  440 QNVETWRPAVEICRSQVANATLSIASLLIQALAVQFPRLCGAIRDAVSGLVEQLADEVSTRIEEIFQKESDPFTTNEGMLDVINTIRFRLFDVALEEALATAGEKP------AESNALLATLRESLGAWYMKNHGVGTMANVEDMCTLLQAYWNVATKRLVDNVCMTMEQDFVVRLLGLAESELFLLAARLENVEE-----------------------LFVEDASVMERRRTLQAKRDRLNRGMESLRSF 661
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: A0A7S3UVE7_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UVE7_HETAK)

HSP 1 Score: 135 bits (339), Expect = 3.430e-34
Identity = 79/260 (30.38%), Postives = 129/260 (49.62%), Query Frame = 1 
Query:   13 RQVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPR---LSIFNEDAVLVEKRSFLLMRQQRIKGALDKINHFAPDVMA 783
            + V+ +RP VE C      +   +A  L   + PQ+P L +A  R+ E  + E+ + +  E+D LF KE  PFT N+ +++ IN++RF++FD  L +     G G       +        V   +G+++  AHG        +M+ +LQAYW +  +RV+DN CM LEA+F+ +++  LE +   L                     SGPG +        +F ED  L  +R  L  +++R++ ALD +N  APDV+A
Sbjct:   53 QNVQTWRPAVERCCLRTFEAASTVAALLAEALVPQFPNLCRALTRLAEEAIGELQQDVLEEVDHLFAKESEPFTTNESMLDLINKLRFQKFDSALAEAFGRLGQGDRTAEQMAAA------VLTGMGRFYLDAHGVAANGNPAEMAILLQAYWNIATRRVIDNVCMTLEATFVARLLALLENRTFLL--------------------GSGPGGEAEAGGVAQLFVEDEALARRRRALADKRERLERALDFVNRAAPDVVA 286
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: A0A8J2SEQ3_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEQ3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 1.260e-32
Identity = 82/262 (31.30%), Postives = 128/262 (48.85%), Query Frame = 1 
Query:   13 RQVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKN-----WVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGALDKINHFAPDVMA 783
            + +E +RP VE CR     + + ++  L+  +AP YP L     +++ + + E  + +Q +LD +F KE +P+T N+ ++E +NQ+R + FD  L  VL    D  P      D    K+      V   LGQW+   HG N  SKVEDM T+L+AYW V  KR+VDN CM LE  F    +++LE        D    EK   +                   +F +D  +V++R   L ++ R++ ALD +      V+A
Sbjct:  449 KNIEEWRPFVEDCRAQYVATTIRVSDELLEALAPTYPSLVSEIRQLVTTILEEAGDRVQRKLDDVFAKESDPYTTNESMLELVNQIRMKNFDIALRSVL----DSVPPSALVGDNEEKKSAAAAAHVKRKLGQWYMATHGVNTASKVEDMCTLLEAYWDVATKRLVDNVCMTLEHDFANFSLKKLEESCFLFAADAGVPEKTDLLE-----------------RLFLQDPRVVQQRKAALEKKGRMEAALDALGESGLRVVA 689
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: A0A7S2W2A1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W2A1_9STRA)

HSP 1 Score: 133 bits (334), Expect = 1.450e-31
Identity = 76/259 (29.34%), Postives = 134/259 (51.74%), Query Frame = 1 
Query:   16 QVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGALDKINHFAPDVMAVSR 792
            ++E +R  V+T +N   + +L ++ S+   + PQYP + +    +++        +++  +D+ F +E +PF  N DL   I +VR ERFD+ + + +  A     DG    D+  L+  +   LG W+   HG +  S +EDM T+L AYW +++KR+ +N CM  EA  L ++ E +E++LLT  Q   E+  +                      +FNE   +VE+R+ L  ++ R   A+D I   APD++A+S+
Sbjct:  441 KIEDWRAPVDTLKNEVFDLILAVSTSIFTLLCPQYPEIGKLVSMVVQGWAERHMVAVERRIDEAFKQEADPFVSNDDLGIEIIRVRGERFDKAIERAMKLASTDAGDG-TIKDMDKLEARILDKLGFWYMANHGVSSASLIEDMLTVLMAYWALSSKRLTENTCMSFEAHVLQRLSEDIESELLTAVQTQPEDVVK---------------------ELFNEPKHMVERRTLLKTKKARFDSAMDSITRLAPDLVAISK 677
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: A0A7S3NNK1_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NNK1_9STRA)

HSP 1 Score: 120 bits (302), Expect = 1.980e-27
Identity = 75/257 (29.18%), Postives = 117/257 (45.53%), Query Frame = 1 
Query:   13 RQVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGALDKINHFAPDVMA 783
            + +E++RP VE CR     +   ++ +L   +AP YP L     +     +    + +  +LD +F KE +P+T N+ ++E IN++R + F+  L  V+  A  G     + +     K  V + LG+W+   HG N TSKVEDM T+LQAYW V  KR+VD                           + S  EK   +                   +F ED  +VE R     +++R+  AL+ I  FAPDV+A
Sbjct:  174 QNIEQWRPWVEDCRQHYVAAARAVSDNLAQALAPTYPALAVEIRQRAHGIMDRYGDVVAEKLDDVFAKESDPYTTNESMLELINRIRQKNFELALKAVISSAPPGSMMASNQNAKNTAKTHVKHQLGRWYMQTHGVNTTSKVEDMCTLLQAYWDVATKRLVDXXXXXXXXXXXXXXXXXXXXXXXLFAAEYSNPEKELDLQ-----------------RLFREDPAIVELRRAAKAKEKRLTQALEAIKQFAPDVVA 413
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: A0A6V2RT65_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2RT65_HETAK)

HSP 1 Score: 111 bits (277), Expect = 5.270e-24
Identity = 66/238 (27.73%), Postives = 112/238 (47.06%), Query Frame = 1 
Query:   31 RPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGA 744
            +  V   R+LC    L +A  L   +A QYP LR+  +++    + E        +D+L D+EK+PFT N  L + +N++R++RF+  + +    A          + +  +K      L +W+R  HG N +S  EDMS IL+AYW + ++R VDN CM ++ + L  +  R++ +      D                       ++   + F EDA L  +R  LL +Q+R+  A
Sbjct:  454 KVAVSEMRSLC----LEVASKLTEIIAVQYPALREGVKKVAAVVLEETMTKALDLVDELLDREKDPFTANDFLAQHVNKIRYDRFELAVVRAFETAA------ATGTGIESVKQGAAQELQRWYRETHGVNSSSNAEDMSAILEAYWTLASRRFVDNVCMGIDRTMLNSLAGRIQEECYMFVHD-----------------------EEKLAAFFEEDARLAHRRRELLSKQERLMKA 658
[Close]
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Match: A0A6V1N3L6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1N3L6_HETAK)

HSP 1 Score: 111 bits (277), Expect = 5.280e-24
Identity = 66/238 (27.73%), Postives = 112/238 (47.06%), Query Frame = 1 
Query:   31 RPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERIIESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQVLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMSTILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKRPTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGA 744
            +  V   R+LC    L +A  L   +A QYP LR+  +++    + E        +D+L D+EK+PFT N  L + +N++R++RF+  + +    A          + +  +K      L +W+R  HG N +S  EDMS IL+AYW + ++R VDN CM ++ + L  +  R++ +      D                       ++   + F EDA L  +R  LL +Q+R+  A
Sbjct:  457 KVAVSEMRSLC----LEVASKLTEIIAVQYPALREGVKKVAAVVLEETMTKALDLVDELLDREKDPFTANDFLAQHVNKIRYDRFELAVVRAFETAA------ATGTGIESVKQGAAQELQRWYRETHGVNSSSNAEDMSAILEAYWTLASRRFVDNVCMGIDRTMLNSLAGRIQEECYMFVHD-----------------------EEKLAAFFEEDARLAHRRRELLSKQERLMKA 661
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12273.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D8LJA2_ECTSI5.830e-14682.95Mgm1 homolog, dynamin-related GTPase n=2 Tax=Ectoc... [more]
A0A836CBT5_9STRA1.120e-7953.73Mgm1-like protein n=1 Tax=Tribonema minus TaxID=30... [more]
D7FR39_ECTSI5.280e-4335.41Mx1, Mx-like dynamin-related GTPase n=1 Tax=Ectoca... [more]
A0A836CJ76_9STRA1.300e-3431.47P-loop containing nucleoside triphosphate hydrolas... [more]
A0A7S3UVE7_HETAK3.430e-3430.38Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A8J2SEQ3_9STRA1.260e-3231.30Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2W2A1_9STRA1.450e-3129.34Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S3NNK1_9STRA1.980e-2729.18Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A6V2RT65_HETAK5.270e-2427.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6V1N3L6_HETAK5.280e-2427.73Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12273contigH-paniculata_contig12273:1521..7124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score446.0
Seed ortholog evalue1.2e-122
Seed eggNOG ortholog2880.D8LJA2
KEGG rclassRC00017
KEGG koko:K05288,ko:K20291
KEGG ReactionR05923,R08107
KEGG Pathwayko00563,ko01100,map00563,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0000151,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010498,GO:0019005,GO:0019222,GO:0019538,GO:0019899,GO:0019941,GO:0030162,GO:0030163,GO:0031461,GO:0031625,GO:0032991,GO:0043161,GO:0043170,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0050789,GO:0051171,GO:0051246,GO:0051603,GO:0060255,GO:0065007,GO:0071704,GO:0080090,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.protein ubiquitination
EggNOG OGsCOG0699@1,COG5021@1,KOG0446@2759,KOG4276@2759
Ec32 ortholog descriptionMgm1 homolog, dynamin-related GTPase
Ec32 orthologEc-02_005320.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons7
Model size795
Cds size792
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12273.1448.1prot_H-paniculata_contig12273.1448.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12273 1521..7121 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.40716-CDS-H-paniculata_contig12273:1520..16371622928949.40716-CDS-H-paniculata_contig12273:1520..1637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 1521..1637 -
1691480678.4161613-CDS-H-paniculata_contig12273:1520..16371691480678.4161613-CDS-H-paniculata_contig12273:1520..1637Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 1521..1637 -
1622928949.4226887-CDS-H-paniculata_contig12273:1964..21801622928949.4226887-CDS-H-paniculata_contig12273:1964..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 1965..2180 -
1691480678.4271789-CDS-H-paniculata_contig12273:1964..21801691480678.4271789-CDS-H-paniculata_contig12273:1964..2180Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 1965..2180 -
1622928949.4379728-CDS-H-paniculata_contig12273:2980..30461622928949.4379728-CDS-H-paniculata_contig12273:2980..3046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 2981..3046 -
1691480678.4354336-CDS-H-paniculata_contig12273:2980..30461691480678.4354336-CDS-H-paniculata_contig12273:2980..3046Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 2981..3046 -
1622928949.4541638-CDS-H-paniculata_contig12273:3211..33041622928949.4541638-CDS-H-paniculata_contig12273:3211..3304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 3212..3304 -
1691480678.4451485-CDS-H-paniculata_contig12273:3211..33041691480678.4451485-CDS-H-paniculata_contig12273:3211..3304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 3212..3304 -
1622928949.4714627-CDS-H-paniculata_contig12273:5391..54511622928949.4714627-CDS-H-paniculata_contig12273:5391..5451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 5392..5451 -
1691480678.4526339-CDS-H-paniculata_contig12273:5391..54511691480678.4526339-CDS-H-paniculata_contig12273:5391..5451Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 5392..5451 -
1622928949.4877586-CDS-H-paniculata_contig12273:5774..59121622928949.4877586-CDS-H-paniculata_contig12273:5774..5912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 5775..5912 -
1691480678.4607809-CDS-H-paniculata_contig12273:5774..59121691480678.4607809-CDS-H-paniculata_contig12273:5774..5912Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 5775..5912 -
1622928949.5030506-CDS-H-paniculata_contig12273:7019..71211622928949.5030506-CDS-H-paniculata_contig12273:7019..7121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 7020..7121 -
1691480678.468963-CDS-H-paniculata_contig12273:7019..71211691480678.468963-CDS-H-paniculata_contig12273:7019..7121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12273 7020..7121 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928949.5213397-UTR-H-paniculata_contig12273:7121..71241622928949.5213397-UTR-H-paniculata_contig12273:7121..7124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12273 7122..7124 -
1691480678.4761512-UTR-H-paniculata_contig12273:7121..71241691480678.4761512-UTR-H-paniculata_contig12273:7121..7124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12273 7122..7124 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12273.1448.1

>prot_H-paniculata_contig12273.1448.1 ID=prot_H-paniculata_contig12273.1448.1|Name=mRNA_H-paniculata_contig12273.1448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=264bp
MINRQVERFRPVVETCRNLCCNSLLNIAVSLVGEVAPQYPRLRQAFERII
ESTVPEMAESLQPELDQLFDKEKNPFTENQDLIEAINQVRFERFDRVLHQ
VLVEAGDGPPDGGDASDVTPLKNWVTYNLGQWFRFAHGANPTSKVEDMST
ILQAYWRVTAKRVVDNACMLLEASFLGQVVERLEAQLLTLTQDLSEEEKR
PTVSPAAAAASSGPGWQQPRLSIFNEDAVLVEKRSFLLMRQQRIKGALDK
INHFAPDVMAVSR*
back to top

mRNA from alignment at H-paniculata_contig12273:1521..7124-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12273.1448.1 ID=mRNA_H-paniculata_contig12273.1448.1|Name=mRNA_H-paniculata_contig12273.1448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5604bp|location=Sequence derived from alignment at H-paniculata_contig12273:1521..7124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGATGATAAATCGGCAGGTGGAGAGGTTTCGGCCAGTGGTGGAGACCTG
CCGCAACCTGTGTTGCAACAGCCTGCTCAACATCGCCGTCAGCCTAGTGG
GCGAGGTGCGCTGGTGACTGACTGACATTGAATTGCAGTCACTCAACTCT
ATTTTAGCGGGAGCTTGTTACTTGGGAGGTTGGAGGACCCCAGCGTTAGC
GGGCGGTGGGGATTGCATTTATTGCATCATTCGTTACCCGCGGTAATACT
TGACATCTGTTGCCCGCTTTTTTCTTTTTTTTTTAACGGGAATAGAGAGA
ATGGAGTGTTGCCAGGGGAGGCATGAAGATATTCGCGGGAGACACCGCCT
GCTCTGGGGATTGTTTCCAAGTCTTGGGGATATACTGTACGTAGTGTGGA
GCATGCACTTGGATTTGTTATGTTGATGAAAAACTGGTCATCATCCAGGG
TCGGAAGCGGCTAGAAAATTTGTTCCGATAATATGACAAGATATCGCTGG
TTGTTGGTGTAGGGGGCCGAGGGTTAGGAAGCATAATAGCGTCAGGAACG
TGTTCTCCACGGTTTCCTCTTCTTTTTTTTTTTTTAGTCCCGTCCCTGGC
TTTTTGACGGGGTAAGGCGGGATGGGGTGTTCCCTGTTTGTCCTCTCCTT
TCTTTTTCCCCCCCTTTTAAAGGCAACTGCTATTTTCGGAATGCCAATGT
AGTTATGGCGTGTGGAATGGGTGTTATGCTTCTTTTGGCGGTTTTAGTGT
TAAGATGTTGACCGTGATGGATGGATGGCTTTCCCGCTCTTGTTTTTTGT
TTTTTGTTTTGTGTTGTTATAATAGATGATCTCTCTCGTGAAATGATGTT
GAAGTCTATTTTTCTGTAAATTTTTCCTCTGTTGACCCCTCCTCCCCCCT
CTCCCTTTTTGGTCTCTCGTGTTTTGTCTTGGGTAAGTTATCTTTGTTTC
ATTTATTCTTCTCGCGTGATGCCTTGGCTCGTGATGCATAGTTCGGCTCG
GGCAATTCAATCATTATCGGTTGCCGTTTTTCCCTCTTTCGTGTCGGCGA
AATGATATTATTTTGTGTTTTTTTTTTTCATTAATGATTTTTTTCGTCTT
CTCCGTTGTCTTTGTTTCAGGCCTGGAAGTTGTTGTCGCATGATTTGTTT
TTCCTGATATTTGCTATTTGACCTATATATATATGTTCACTTGTTGGGGC
CGGGGCTAACAGGTGGCCCCGCAGTACCCGCGATTGAGACAGGCGTTCGA
ACGAATCATCGAGTCCACAGTGCCTGAAATGGCGGAGTCGTTGCAGCCCG
AGCTGGATCAGCTCTTCGACAAGGAGAAAAATCCTTTCACGGAGAATCAG
GTGAGAAATGCGCAACGCTTCTGACCTGTCCGATGGTCACCTTGCCTGAC
TAACTCTCACCGACGGATATGATAGGATGGTTATGGTTGCGAGTCAATTG
GACCATGACTTTTGTACAAAGCTATTAAAATTCCATCCTAATAGAAATCA
GCGACAACACGCACGACCAGGTATTGAAATTCGATCCAGGGCTTGGTTTA
CACGGCGTTGACATTTTTGTGACAGAGTGCTTGTCACAGATACTTGCCCT
GAACATGCCGCCAAGTAACCGATGCTTACCTTGCTCCACGCGTGGACGGT
ACGATACGACGCGTGGTATGCAGGACCTGATTGAAGCGATCAACCAAGTC
AGGTTCGAGCGATTCGACAGGGTTCTACACCAGGTGAGGAACGTAGCCGG
TCATGACCGTGCCTAAAGTACTATTCTAGTAATAGTAGCATTGTTAGGGC
TATGGCTACATACATGCTTGTAATACCTACCGTGTGTTATCCTTGTGCAA
AAGTCATGGTCCATAACCCACGCACAGCGGCCCCCCGAGATCTCACATAA
ATTAGCTACGCGTTTTTTTTTTCATGTGTGCAGTGTGTAAACGATTGTGT
TTATTTGACAATCAACGAGGCTTGTATTCGTTCCCCCCACACGTGTTCAA
AGTTAATAATTTTCCAGGTTTTGTTATGATTGCAGGCAGGCAGGTATATT
TGACTGGTGGGTACTGACGAGAGTATTCAGCCTAGCCCTCTTGCTCAACG
TTTAGTTGACCACTTCTGTTCATTCTTAGCTCTTAATCGATGGGGTGATT
CGATTCAATTGAAATATATATATATATATATATATATATTATTTTTTTTT
TTCGTGAAAACGAAGTTATTTGACTCAGATATTATCGAAAAAAGAACTGA
CTGGCCTTAATAATCTTGTTAGCTTCCACAATAGACAGTTTTGGAAACGC
ACAAAATAGTTTAGAGCCGAAAACGTTTCAGAGCTAAGCAAAAAAACCCC
GGTAATGGTGCGTTTGGGCGAGGAAAAACACTCTTGGCCGAAAGTTTAGA
GTCGAAGTGATTTTGTTTTCGGCTTCTGCTCTGTACGTCGGGTGACAGTT
AAAAGAGATCGTAGCCCAAATTTAGATACGAATCGGTACTAACCTGCATG
AGTACGTGGGCAGATAGCATAGGTAACTGGCTATAATACAGACAGTGGTA
CGTGGGCGTGCTAACGCGATGGATCACTCATGGTAAATCCGACGTCATCC
GGACAGAAAAACAAGAAGTTAAAGTACTGTCGTTGTGTATTCCAGGCTAT
ATGGCAGCTGCGCCTCGTAGCTCCTGTGCTTGCCCTACAGGCGATGATGC
GTGTCGCAGCTTTATTTCCTGTGTACTCCAACGAGTGAGCATGCGTGGTT
TGGTTTTTAGGATATACTGCAAATATCTTGCACCCAACCAAGGTGGACAA
ACAGACGGTGCATGCAGGCGGCAGGTGCCATGAATCACGTACGATGGACC
CTTCGCCCGAATAGTATAACAGATATCGCACAAAACTATCATTGTAGTCC
CAAGGGCATCGGGTGGTGGTGCTGTGCAGCTTGCGTGTGCTTGTGCCCCA
GTATGTAGGATACTGGTTGCTGAGTCGCTGAATTTTCATCATATATATTT
TTTCCGTGGTTGCACCTCACTTTTTCTGCGGTGGCACGTGATTTTTTCCT
TGCATCACGGGAAAAGCCAGGCAAGCACATGCACAAAAGATGCACGCGAC
AGCAGTTTGCTAAAGATGCACGAGGGCAGAGTGCCGCAAGACCTTTATCA
TTCAACCGTATGTCGGCGACGTATTCCCCATGCTGCGGTCGTACCACTTC
AGTGTCTGATGCTTGTCCACAACTTTGTGCGACCTCGTGCTGCAGACAGT
CACAGTTTACTCCTGAAGTTGGTGTCGTGTGCGTGATGTGTTGTTTATCT
CAGGTTTATTTTTTAATCGTTGATTGATAGCGTGTAGTGATGGCCGATAG
CGGCCGACAAGAAGACACAGCGGCAAGCAAAGAGGAGACCACTCTTGCGA
TACCTTAGCTCTTGTGCTATATGTCGGTTGTGGAGTAGACGATGGTTGCT
TTGGTATCAGCAGACCAAGACCGTCTGTCTGTACGACTGTTGCACTGTCT
GTACAATGGTACTCTGACTGCTGTGCCATGTGACGCTTCGGTTTGCATGT
GGTAAGTACCCTCAATAAGCGCAAGGCGCCCAATGACATCTTACTCGGTC
TCGAGTCTGAACTTTTACCGTTAGGGTTCGGGGTGTTGAGGATTTGGGCT
GTAAAATTTGAACTGTTGAAGGCTTTTCCCCGAAACTGTCTATTACGGCG
ACATTTTTTAGTTGTTTTATACAAGTGTTGTTTTTGGTGGTTGTCGTTGG
TCGGGAGAGTTCTTTTCCACCAATCACGAAGTTGGTTGTTCTTTGTTTGC
TTTTTTTTGCTTTTTGGCAGGTGTTGGTGGAGGCTGGCGACGGACCGCCG
GACGGGGGCGATGCCTCTGACGTCACTCCCCTCAAGAATTGGGTTACGTA
CAACCTGGGACAGGTAACGTAATTGGTGTATGTTCTTGGGGAGTAACGAG
TTGTTATTGTGGTGACGGTGGTTGTTTGGTTGTGCTGTGCTGTGTTCTGT
CATTTTTTTTTGGATAACCTAACCGCCAATGGCCGTTGCTCTCCTTGGTC
GTTTGTTTGCTCCCTTTGTCGAATCCAGTGGTTCCGCTTTGCTCACGGCG
CCAACCCGACCTCGAAGGTGGAGGATATGAGCACCATTCTACAGGTATCT
GAATTAATATTATTGTTGGCTGGCTTGAGTGTGGCTCTTGGGGAACAAAG
GAGGTGGGGTGGGTCTGTGTAGTATCCTCACATATGATTTCATACGGTGA
GTTGGTGATGGAGGCGCTCGTCGTTCGGAATACATCTTCAATAGTGCACT
CAAGTAATTCCTGGAACATGAATCTTTAGGTGAAAGCAGGGAGCCACTGC
AAGCGCAGCGAGTCCGTCGGTCGAGGACAAGAATTTCACGGGCGTGGTTG
TAGCTCCATTGTACTAGTGGTTGATGTATAATAGTATTGGGTTGAACTAA
CTCCCCAAGTCTTGGTCACGTAGCGTCTTATTTATGTTGTTCGGCGTTTT
TTAGCTGCGGCACTGCTTGTTGTTGGAGTGGTTGTGTCTATGTGTCATGT
GATGGATACAGAGGTGCAATGACCATGTTATTGCGGTTACCGCCAGACGA
GTGGAATGTTTGTACGTTTGCTTGGTTGTACTCTCGGCTTAGTTTTGTAC
CTTTTTCTTGTGGTAAGGCTGTACCTTTTTTCATGCGTACTTCGTACCAT
GTTTCGTATGTAGTTTCTGCACATGGTCATGGATGTTTTTTGTACACGTG
TCAATAATTTAATTTTGTACCTTTTTTTAACGGTTTGTTTTTGTACCTTA
TTCTGGAGCGTTCCATTTGGTCGATTTTTTTTTTGTTTTATGGCTTCTAC
CTTCACTGTACCTATACCGCCCTCACCATCACCCCCCCCTTCATCCTCTT
GACTTAAATGCTGGCTGGCTGGCTGGCTGGCTGGCTGTGCTCAGGCGTAT
TGGCGCGTGACCGCCAAGCGAGTAGTCGACAATGCGTGCATGTTGCTGGA
GGCATCTTTCTTAGGACAGGTGGTGGAGAGATTGGAGGCTCAGCTGTTGA
CCCTAACCCAAGACCTTTCGGAGGAGGAGAAACGGCCGACAGTGTCTCCT
GCCGCCGCTGCTGCAAGTTCTGGGCCAGGGTGGCAGCAACCACGACTCAG
CATTTTTAACGTGCGTTTTTCTTTCCATTATACTTTTTCGTTTCCCTTTT
ATTATTTTTTCCCTTCTTTCTCTCTCTCGCTCTGTCTGTCTGTTTTCCTG
TTATTCCCGACGATCGAACACTTTTTAATGTTTTTTTTTTTTTTTTGTAT
GACTGATGATGAAAATAGAAGTTGATGGTGATTTTCTTACCCCCCTCTTT
TTTTTTCTTTTTTTTTCACCCATTGTTAATTTTCACTGGCAAGAAGTTTT
TAGAATGCATAATGTAGTGTATGACGTTGTCGACGACGGCTACAGTACCC
CAACAAAGAACGCCACTGTTCCTTTGTGCATCGTCAGGAGGATGCGGTAC
TGGTGGAAAAGCGGTCGTTCCTGCTGATGCGACAGCAGCGTATAAAGGGC
GCTCTGGACAAGATCAACCACTTCGCGCCAGATGTTATGGCCGTCTCTAG
GTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig12273:1521..7124-

>mRNA_H-paniculata_contig12273.1448.1 ID=mRNA_H-paniculata_contig12273.1448.1|Name=mRNA_H-paniculata_contig12273.1448.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1584bp|location=Sequence derived from alignment at H-paniculata_contig12273:1521..7124- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATAAATCGGCAGGTGGAGAGGTTTCGGCCAGTGGTGGAGACCTGCCG
CAACCTGTGTTGCAACAGCCTGCTCAACATCGCCGTCAGCCTAGTGGGCG
AGATGATAAATCGGCAGGTGGAGAGGTTTCGGCCAGTGGTGGAGACCTGC
CGCAACCTGTGTTGCAACAGCCTGCTCAACATCGCCGTCAGCCTAGTGGG
CGAGGTGGCCCCGCAGTACCCGCGATTGAGACAGGCGTTCGAACGAATCA
TCGAGTCCACAGTGCCTGAAATGGCGGAGTCGTTGCAGCCCGAGCTGGAT
CAGCTCTTCGACAAGGAGAAAAATCCTTTCACGGAGAATCAGGTGGCCCC
GCAGTACCCGCGATTGAGACAGGCGTTCGAACGAATCATCGAGTCCACAG
TGCCTGAAATGGCGGAGTCGTTGCAGCCCGAGCTGGATCAGCTCTTCGAC
AAGGAGAAAAATCCTTTCACGGAGAATCAGGACCTGATTGAAGCGATCAA
CCAAGTCAGGTTCGAGCGATTCGACAGGGTTCTACACCAGGACCTGATTG
AAGCGATCAACCAAGTCAGGTTCGAGCGATTCGACAGGGTTCTACACCAG
GTGTTGGTGGAGGCTGGCGACGGACCGCCGGACGGGGGCGATGCCTCTGA
CGTCACTCCCCTCAAGAATTGGGTTACGTACAACCTGGGACAGGTGTTGG
TGGAGGCTGGCGACGGACCGCCGGACGGGGGCGATGCCTCTGACGTCACT
CCCCTCAAGAATTGGGTTACGTACAACCTGGGACAGTGGTTCCGCTTTGC
TCACGGCGCCAACCCGACCTCGAAGGTGGAGGATATGAGCACCATTCTAC
AGTGGTTCCGCTTTGCTCACGGCGCCAACCCGACCTCGAAGGTGGAGGAT
ATGAGCACCATTCTACAGGCGTATTGGCGCGTGACCGCCAAGCGAGTAGT
CGACAATGCGTGCATGTTGCTGGAGGCATCTTTCTTAGGACAGGTGGTGG
AGAGATTGGAGGCTCAGCTGTTGACCCTAACCCAAGACCTTTCGGAGGAG
GAGAAACGGCCGACAGTGTCTCCTGCCGCCGCTGCTGCAAGTTCTGGGCC
AGGGTGGCAGCAACCACGACTCAGCATTTTTAACGCGTATTGGCGCGTGA
CCGCCAAGCGAGTAGTCGACAATGCGTGCATGTTGCTGGAGGCATCTTTC
TTAGGACAGGTGGTGGAGAGATTGGAGGCTCAGCTGTTGACCCTAACCCA
AGACCTTTCGGAGGAGGAGAAACGGCCGACAGTGTCTCCTGCCGCCGCTG
CTGCAAGTTCTGGGCCAGGGTGGCAGCAACCACGACTCAGCATTTTTAAC
GAGGATGCGGTACTGGTGGAAAAGCGGTCGTTCCTGCTGATGCGACAGCA
GCGTATAAAGGGCGCTCTGGACAAGATCAACCACTTCGCGCCAGATGTTA
TGGCCGTCTCTAGGTAAGAGGATGCGGTACTGGTGGAAAAGCGGTCGTTC
CTGCTGATGCGACAGCAGCGTATAAAGGGCGCTCTGGACAAGATCAACCA
CTTCGCGCCAGATGTTATGGCCGTCTCTAGGTAA
back to top