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Homology
BLAST of mRNA_H-paniculata_contig1227.1447.1 vs. uniprot
Match: D7FWV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV4_ECTSI) HSP 1 Score: 171 bits (432), Expect = 6.790e-44 Identity = 95/203 (46.80%), Postives = 118/203 (58.13%), Query Frame = 2
Query: 92 FLDVSLLVASEGWLDPRLGKHLQEACWTLCRDCREHVGSHLRVGDSTPRVLWPLRPITTVGSRSRVLGDCGDGRCRESDDGSATITLDLSVRFAVTPALSQSDGDVSRRSLACQLNSRSASNNSDNKCLSDGSGDLSTSIPPLRVSAMTWKRSLDDLARGLALPEGLEAVFFVCNFRDYDVGWVVWPSSLLSISFGNGFNQPI 700
LDVS LVAS GWLD GKHLQEA TLCRDCRE+VGSHLRV STPR LWPLR TVG G G GR + +A + + VR + + + + ++ + L G SIPPLRV+ MTW+R L DLA G ALP GL ++ F C+FR +DVGWV +P+SLLS+SFG F+Q +
Sbjct: 92 LLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRALWPLR---TVGVVLFGKGPGGGGRVHGIGNSAAAASGGVGVRRLAGGFIGKENAGGTGYRTGASSSASGGKGGLLSSRLQQQYGWKGRSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHFACSFRYFDVGWVSFPTSLLSLSFGQNFDQSV 291
BLAST of mRNA_H-paniculata_contig1227.1447.1 vs. uniprot
Match: A0A6H5KHB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHB9_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.280e-39 Identity = 103/225 (45.78%), Postives = 122/225 (54.22%), Query Frame = 2
Query: 92 FLDVSLLVASEGWLDPRLGKHLQEACWTLCRDCREHVGSHLRVGDSTPRVLWPLRPITTVGSRSRVLGDCGDGRCRESDDGSATITLDLSVRFAVTPALSQSDGDVSRRSLACQLNSRSASNNSD-----NKCLSDGSGDL--------------STSIPPLRVSAMTWKRSLDDLARGLALPEGLEAVFFVCNFRDYDVGWVVWPSSLLSISFGNGFNQPIAAV 709
LDVS LVAS GWLD GKHLQEA TLCRDCRE+VGSHLRV STPR LWPLR T G G G GR LS+ +V A G V R LA N + + + + S G G L SIPPLRV+ MTW+R L DLA G ALP GL ++ C+FR +DVGWV +P+SLLS+SFG F+Q I ++
Sbjct: 72 LLDVSFLVASGGWLDLASGKHLQEASGTLCRDCREYVGSHLRVDYSTPRALWPLR---TAGVVLFGRGPGGGGRM-------------LSIGNSVATA----SGGVGVRRLAAGFNGKENAGGTGYRTGGSSSASGGKGGLLPWRLQQQQQHGWKGQSIPPLRVTTMTWERPLSDLAHGRALPPGLHSLHLACSFRYFDVGWVSFPTSLLSLSFGQNFDQGIDSI 276
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | FNIP |
Ec32 ortholog | Ec-08_004550.1 |
Exons | 5 |
Model size | 2327 |
Cds size | 1353 |
Stop | 1 |
Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1227.1447.1 >prot_H-paniculata_contig1227.1447.1 ID=prot_H-paniculata_contig1227.1447.1|Name=mRNA_H-paniculata_contig1227.1447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=451bp
MTWKRSLDDLARGLALPEGLEAVFFVCNFRDYDVGWVVWPSSLLSISFGN GFNQPIAAVSWPAGLQRLTFGWEFNQPIDEVLWPSGLKRLTFGEDFDQSI HSVAWPMSLEDLTFGGRFCRPVHRVAWPPSLRRLTFGWRFNHDVRSVWWP QGLQRLMFGSLFNQPVDGVVWPRDLQQLIFGRVFNQEVGQVTWPCGLKLL ALGDFFDQALTGVTWPASLKQLSMGNKFNQSIAGVALPARLEQMAFGWRF NHPVDSVVWPANLRQLTFNGGFNQPIEGVAWPRGLRQLTLGRNFDQPIGQ VHWPSGLERLDLGDNFNQCIDAVKWPKDLEHLTFGQAFDQNVEQTRWPQG LKRLAFGGSFNRSLELVHWPLNLEALSFGREFNQPVHRVSWPPCLKKLAF GHRFDHNVNGLEWPEGLKEVKLGRSSRAVNVNNRRRSQQHANAEGSQGGA * back to topmRNA from alignment at H-paniculata_contig1227:20565..25463+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig1227.1447.1 ID=mRNA_H-paniculata_contig1227.1447.1|Name=mRNA_H-paniculata_contig1227.1447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4899bp|location=Sequence derived from alignment at H-paniculata_contig1227:20565..25463+ (Halopteris paniculata Hal_grac_a_UBK monoicous) AGATGCACCAACGCTGCCCACTAAGCGTCGAGCACAGGAAGCCCACCCGC
CGCCGCGGGTCCCCCCCGGATCTGGACGTCCTCCTGCGCGCTTCCTCGAT
GTCAGCCTTTTGGTAGCTTCGGAGGGATGGCTCGACCCACGATTAGGCAA
GCACTTGCAGGAAGCTTGTTGGACGCTATGCCGGGACTGTCGAGAACACG
TGGGTAGCCACCTTCGCGTTGGCGACTCCACGCCACGTGTGCTCTGGCCC
CTTAGGCCCATTACCACGGTCGGTTCCCGCTCTAGAGTTCTTGGTGATTG
CGGTGACGGTCGCTGCAGAGAAAGTGACGACGGATCTGCGACGATAACGC
TTGATCTATCTGTTCGCTTCGCGGTGACGCCTGCCCTATCTCAAAGCGAC
GGCGACGTCAGTAGGCGAAGTCTCGCCTGTCAACTAAACAGCCGCAGTGC
CAGCAATAACAGCGATAATAAGTGTTTGTCCGATGGTTCCGGCGACCTGT
CGACCAGCATCCCCCCTCTGCGCGTTTCCGCCATGACTTGGAAACGTTCT
CTGGACGACCTGGCACGCGGGCTCGCGCTCCCCGAGGGTCTCGAGGCCGT
GTTCTTTGTCTGCAACTTTAGGGACTACGACGTGGGCTGGGTCGTCTGGC
CTTCGTCCCTGCTGAGCATCTCATTTGGCAATGGCTTCAACCAGCCGATC
GCCGCCGTGTCTTGGCCCGCCGGTCTCCAGCGGCTTACTTTCGGGTGGGA
GGTACTACTGCAACCTTTGTTTGCATGCGGCGTTTTTTTGCTTGGTACCT
TCATACACGAGAATATTTGTATTGCATCCTGGTGTTTGATTGGTCGCATA
AGAGCATATATCTGGTTTGTCACTTATCTTCAATTCTTGCTGTTCCCGAA
TTGCTGTATCCCGAGTCAACATATTCTCGGAACAAATTAAAAAACAAACG
TTCTGACGCTAACTGAATGGTGCTAACTAATGTCACGACTTCGACAGTTC
AACCAGCCGATCGATGAGGTCTTGTGGCCGTCGGGGCTGAAACGCCTGAC
TTTCGGGGAAGATTTCGACCAGTCGATCCACTCCGTGGCGTGGCCAATGA
GCCTCGAGGACCTGACGTTCGGCGGTCGATTCTGCCGCCCCGTTCACCGG
GTCGCCTGGCCTCCCAGCCTACGCCGGCTGACATTCGGGTGGAGGTTTAA
CCACGATGTGCGGAGTGTGTGGTGGCCACAAGGCCTGCAGCGGCTGATGT
TCGGTAGCCTGTTCAACCAGCCGGTCGACGGAGTGGTGTGGCCGCGCGAC
CTCCAGCAGCTCATATTCGGCAGAGTATTCAACCAGGAGGTTGGGCAAGT
AACTTGGCCGTGTGGTCTGAAATTGCTCGCCCTTGGCGACTTTTTCGACC
AGGCCCTGACAGGGGTCACTTGGCCCGCGAGCCTGAAGCAGCTGTCGATG
GGAAACAAATTCAACCAGTCTATCGCGGGTGTGGCGTTGCCTGCGCGGCT
CGAGCAGATGGCTTTCGGGTGGAGGTGACTGAACAGTTTTTGTTCATGAC
CTTCATACCTACCGAGTCGAAAACAACCATTTGAAGGACAAGATTGTTTT
TATCGATATAGAATGATCTTCAAAGCCCAGTACCTGTGATTGTTCTTCTT
TGCAAATCTGAAAATAACATTGAAAAAACGCCTTACAAGTATAAATTCCA
CACTTGTTGTTCCCCCCGATCGTAAAGGTTGGCTCTTGTGACATGCAGCT
TCTGTATCTGTTGTATATATATATATATAGGGTATCAGGAAGTTTATGCG
GTGTATTCTGTGAGCTTATCGACTTCGGTTGAAGAGTTTACACCCTAAAC
AAGGACAACGTATGCTGAACGGCAATATAACGCTCTACTCTAGAGCACAA
ATGCTTTTTTACCATATTCCACATCAGGAGTACAAGATCATAGGCAGATT
ATATTCCGAGAGTAGTCACACACGAAGCCACGTGTTGGTTGTGTGTGGCA
CGACGTTGTGTATAGGTGCGAACGAAGATCAAGTCTCGTGCGGTACTTGG
GGGATAGTCACTCCTGCCGATTCTTCAATGTTTGGTTGCGGCCGGGATGA
TCACTGTCTAATGGCAGAATCTGAGTGGCATCGCAACGCAAGGATCATGA
TTAGTGGCCAGTATTACCCTTGTGAAACGCAGCCTGACCGGCAAAAAAGC
TGCATGCTCCTTCCCGGCATTGTGTAGGAATGTGAGGTCAGTGGTCGAGA
GTATGGCATACGTTTTCATGACTACACCCTCCCCCCCGACCAAAGAGCAG
AAAGAAAAAGGTTCATAGTGAGAAACAGGAGAGCTTACTTGTTTTTTGTA
GCTATGTAGCATGTATATTATGCCTGATAACCCCCAAAAAATATCAAAAT
CTTGTTCTCCAACGACAGATTCAACCATCCCGTGGACTCGGTAGTTTGGC
CCGCCAACCTGCGGCAGCTGACGTTCAACGGCGGGTTCAATCAGCCCATC
GAGGGGGTGGCGTGGCCGCGCGGTCTGAGACAGTTGACACTCGGGCGGAA
CTTCGACCAACCCATCGGTCAAGTGAGTTTTTCTTTTCTTTTCTTCTTAG
AAGTGCGCTCCATGAACCAATACGCTCACGGAGAGGATTCCTGGATTTTG
ACCAAATTTCCTGGATAAGGCCGCGGATTAAACAGGTTGGCGGATATCTG
GGTATTTATATATGTGTCAAATCAATTAAGAAGAAATCCGGATTATCGCC
GGACTTGGACAGATTTTCATTAATTTACACAGAATGAAGTCATTATGGGA
AGTGGCAAGCCAGATGGCTATTGCTGTGCATACGACGCCAATGTGGGTGT
GTGCTCAAGTTCCGTGTGCGCGGTGTATCATGCGGTCGAACGACCCATGC
TTTTGGTGATTTGGCTCCAAAATAATATACCTCATCGCAACAAATATACA
CACTTTTTTCACCAACTTTCGTTAAAACACGGATATGTACCAATCGGCCT
TCATTTTCGGCGTGAACCCGCGGATGAATAGCTCGGAAAACGGGTTACCG
ACGGCAGGACCAATCCGGACCGAAAAACGGATTTCCCTCTTTTTTCTTTT
CCGAATCGGATTATTCTTTGTTTTTTTAGTAGAATGAAGACGGAATACGG
CGGTGGTGCACGCAACGGATTCTGTGTTATTATCTTGCCTGGAGATGCTC
TCGTCGACAGTTGGTCTATCTCGTTTTACCGCGGTGAATCTCTCCCTTCT
TTTTTCCGGTCCTGCTCAGTCAGGAATTGCTGAGCTCTTCCTTTCTTGTC
GGTTCGCTCGCTCATTCGCAGTAAAGATGTTTCAAGGACGGTTCGCCCAC
TTGGTTATGTTCTGTCTCGCTCTGTACATGATTTTGTCCAAGTCCCCCCT
CCGTCTTTGATGGACGTTTTCTCCTGAATCTGCGGCGATTCGCTAGGAGT
ACGAAGTATATATCGTAAGCGCATTCCAAACAGATGCACGTCAAATGGGC
CGAGTGTTAATCTCCGACCGTTTTCAGAAACGATTTTAGCCAAAAAATTA
GCTATATTGTCGGTCTTGCTTATTATGATTCCTACCCCCCCCACACACAC
ATGGTAATACCCAGGTCCACTGGCCGTCAGGACTTGAGCGGCTGGACCTC
GGCGACAATTTTAACCAATGTATCGACGCCGTCAAGTGGCCGAAGGACCT
GGAGCACCTGACGTTCGGACAGGTGAGTCGTACGGCTGGCACCTTAACCT
CATTGGTAGAGGGCCGAACGAGTACTATACTGCTCGAAAGTGGCGCAAAG
TGTATACGAGCTACCCTACCCGTTCGGGCGTAGGTCCGTGTCCTAGAAGT
ACTATCATTCCCGTTTGCCATGTCTTGTATGCTGCCCGCCGTCCGTGAAG
TATTATCATTCTCGTTTGCCATGTCTTGTATGCTTCCTCAGTATCTGTCA
GCACCTCCCCAATTGACGGTTTTGCCGTATTTATTTCCTTCAATCTCGCA
AGTGCTTTACGTTCACGTCTCTCCGCCCACACACCACTCTCCCCGCTCTC
CCCTCTCTGAACTCGACCCTTTTTCAACCTCACTCATCGAATATCATCAA
AACATATTTCAGGCGTTCGATCAGAATGTCGAACAGACCCGCTGGCCGCA
GGGCCTGAAACGGCTGGCGTTCGGGGGCTCTTTCAACCGGTCCTTAGAGT
TGGTACACTGGCCACTCAACCTTGAGGCACTCAGCTTCGGCCGCGAGTTC
AACCAACCGGTCCATCGGGTATCCTGGCCGCCTTGCCTGAAGAAGCTGGC
GTTCGGACACCGGTTCGATCACAATGTGAATGGGCTAGAGTGGCCCGAGG
GTTTGAAGGAGGTCAAGCTGGGGCGCTCCTCTCGCGCGGTTAACGTGAAC
AACCGCCGTCGCAGCCAGCAACATGCAAACGCGGAGGGATCTCAGGGCGG
GGCCTAACATGAATCACTCGCTGACACGTTGTATGTGTGACTTTTTATGT
ATGGGAGCGCGTATCGCGAGAACCGGGAGATAATTTTGTACAGTTTTTTT
AACGGCCGCCTTTGGAAAAATATCAAACGGCTAGAGCTCCATGGTGACTG
TGCTACGCTGCACGGACGGGCATAACGTTTATAGTTGTCTCTCTTTGACT
AGTGTATGTATTTTGCCTCTCTGTCTGTATGACCTCAAAAGTCGCAGTGA
CTCCGTTCTACTGATGTTTCACGGAAGATGTCATAACTTGAACGTAATCT
GCAAGCATTATCTGTGACCGGTTCCACATCTATGCACTGTATTTTGGTAG
GTTGCTGCCATTCCCCCTTTATATATACACTTTTTATACACTGCATGACT
ACGATGGGATATAGTGGAACGAGGGGAGTGACAAACCAGGGAATGGGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig1227:20565..25463+ >mRNA_H-paniculata_contig1227.1447.1 ID=mRNA_H-paniculata_contig1227.1447.1|Name=mRNA_H-paniculata_contig1227.1447.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2706bp|location=Sequence derived from alignment at H-paniculata_contig1227:20565..25463+ (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGACTTGGAAACGTTCTCTGGACGACCTGGCACGCGGGCTCGCGCTCCC CGAGGGTCTCGAGGCCGTGTTCTTTGTCTGCAACTTTAGGGACTACGACG TGGGCTGGGTCGTCTGGCCTTCGTCCCTGCTGAGCATCTCATTTGGCAAT GGCTTCAACCAGCCGATCGCCGCCGTGTCTTGGCCCGCCGGTCTCCAGCG GCTTACTTTCGGGTGGGAGATGACTTGGAAACGTTCTCTGGACGACCTGG CACGCGGGCTCGCGCTCCCCGAGGGTCTCGAGGCCGTGTTCTTTGTCTGC AACTTTAGGGACTACGACGTGGGCTGGGTCGTCTGGCCTTCGTCCCTGCT GAGCATCTCATTTGGCAATGGCTTCAACCAGCCGATCGCCGCCGTGTCTT GGCCCGCCGGTCTCCAGCGGCTTACTTTCGGGTGGGAGTTCAACCAGCCG ATCGATGAGGTCTTGTGGCCGTCGGGGCTGAAACGCCTGACTTTCGGGGA AGATTTCGACCAGTCGATCCACTCCGTGGCGTGGCCAATGAGCCTCGAGG ACCTGACGTTCGGCGGTCGATTCTGCCGCCCCGTTCACCGGGTCGCCTGG CCTCCCAGCCTACGCCGGCTGACATTCGGGTGGAGGTTTAACCACGATGT GCGGAGTGTGTGGTGGCCACAAGGCCTGCAGCGGCTGATGTTCGGTAGCC TGTTCAACCAGCCGGTCGACGGAGTGGTGTGGCCGCGCGACCTCCAGCAG CTCATATTCGGCAGAGTATTCAACCAGGAGGTTGGGCAAGTAACTTGGCC GTGTGGTCTGAAATTGCTCGCCCTTGGCGACTTTTTCGACCAGGCCCTGA CAGGGGTCACTTGGCCCGCGAGCCTGAAGCAGCTGTCGATGGGAAACAAA TTCAACCAGTCTATCGCGGGTGTGGCGTTGCCTGCGCGGCTCGAGCAGAT GGCTTTCGGGTGGAGTTCAACCAGCCGATCGATGAGGTCTTGTGGCCGTC GGGGCTGAAACGCCTGACTTTCGGGGAAGATTTCGACCAGTCGATCCACT CCGTGGCGTGGCCAATGAGCCTCGAGGACCTGACGTTCGGCGGTCGATTC TGCCGCCCCGTTCACCGGGTCGCCTGGCCTCCCAGCCTACGCCGGCTGAC ATTCGGGTGGAGGTTTAACCACGATGTGCGGAGTGTGTGGTGGCCACAAG GCCTGCAGCGGCTGATGTTCGGTAGCCTGTTCAACCAGCCGGTCGACGGA GTGGTGTGGCCGCGCGACCTCCAGCAGCTCATATTCGGCAGAGTATTCAA CCAGGAGGTTGGGCAAGTAACTTGGCCGTGTGGTCTGAAATTGCTCGCCC TTGGCGACTTTTTCGACCAGGCCCTGACAGGGGTCACTTGGCCCGCGAGC CTGAAGCAGCTGTCGATGGGAAACAAATTCAACCAGTCTATCGCGGGTGT GGCGTTGCCTGCGCGGCTCGAGCAGATGGCTTTCGGGTGGAGATTCAACC ATCCCGTGGACTCGGTAGTTTGGCCCGCCAACCTGCGGCAGCTGACGTTC AACGGCGGGTTCAATCAGCCCATCGAGGGGGTGGCGTGGCCGCGCGGTCT GAGACAGTTGACACTCGGGCGGAACTTCGACCAACCCATCGGTCAAATTC AACCATCCCGTGGACTCGGTAGTTTGGCCCGCCAACCTGCGGCAGCTGAC GTTCAACGGCGGGTTCAATCAGCCCATCGAGGGGGTGGCGTGGCCGCGCG GTCTGAGACAGTTGACACTCGGGCGGAACTTCGACCAACCCATCGGTCAA GTCCACTGGCCGTCAGGACTTGAGCGGCTGGACCTCGGCGACAATTTTAA CCAATGTATCGACGCCGTCAAGTGGCCGAAGGACCTGGAGCACCTGACGT TCGGACAGGTCCACTGGCCGTCAGGACTTGAGCGGCTGGACCTCGGCGAC AATTTTAACCAATGTATCGACGCCGTCAAGTGGCCGAAGGACCTGGAGCA CCTGACGTTCGGACAGGCGTTCGATCAGAATGTCGAACAGACCCGCTGGC CGCAGGGCCTGAAACGGCTGGCGTTCGGGGGCTCTTTCAACCGGTCCTTA GAGTTGGTACACTGGCCACTCAACCTTGAGGCACTCAGCTTCGGCCGCGA GTTCAACCAACCGGTCCATCGGGTATCCTGGCCGCCTTGCCTGAAGAAGC TGGCGTTCGGACACCGGTTCGATCACAATGTGAATGGGCTAGAGTGGCCC GAGGGTTTGAAGGAGGTCAAGCTGGGGCGCTCCTCTCGCGCGGTTAACGT GAACAACCGCCGTCGCAGCCAGCAACATGCAAACGCGGAGGGATCTCAGG GCGGGGCCTAAGCGTTCGATCAGAATGTCGAACAGACCCGCTGGCCGCAG GGCCTGAAACGGCTGGCGTTCGGGGGCTCTTTCAACCGGTCCTTAGAGTT GGTACACTGGCCACTCAACCTTGAGGCACTCAGCTTCGGCCGCGAGTTCA ACCAACCGGTCCATCGGGTATCCTGGCCGCCTTGCCTGAAGAAGCTGGCG TTCGGACACCGGTTCGATCACAATGTGAATGGGCTAGAGTGGCCCGAGGG TTTGAAGGAGGTCAAGCTGGGGCGCTCCTCTCGCGCGGTTAACGTGAACA ACCGCCGTCGCAGCCAGCAACATGCAAACGCGGAGGGATCTCAGGGCGGG GCCTAA back to top
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