mRNA_H-paniculata_contig1227.1446.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1227.1446.1 vs. uniprot
Match: D7FWV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWV3_ECTSI) HSP 1 Score: 392 bits (1006), Expect = 1.480e-109 Identity = 211/387 (54.52%), Postives = 269/387 (69.51%), Query Frame = 1
Query: 202 SSTHKQRIGRRLLLKMGLRQSGFNQKFDDSHERYTYLKHYVHELHDSLEQYALQLARQTEAGRALGDVTGHLYEPRNNGFKSAIALKDAQEQNHSGFAGQIQQAFVKGIIEPVVDWKKELENMESLVTNFNDVRVQHDHYRLKVEDLATKAQLLEQRAMTHGDGKDAKAAAEKLKRNTGKLEEVTKEYEKALNAATTGMDNAFKGRLGMMNLIVGRISRFQETFYSQQLMNGLGVSSIL-----GEEVPGLDAGIEEFVPKANVRHFEGELTRRYKITRARMWFRLVGSSLEVYSMKVGEEVEDDPSYVVIETPKAVHQVTGVQKISETHLRVSVLKEEH----GLHLVATDAADGQAWCDALERACVWDA-HSSEKEGSSGAGGNA 1332
++T + RIG RLLLKMGLR+ GF FD++HE+YT+L HYV E+ +SL YALQLAR TEA R +G+ H+Y R GFK A+A K+AQ+ HSG+AGQ+QQA VKG++EP+ +W ++LE++E LVT+FN++RVQHDHYRLKVEDL+ KA+ LE RA T GD +DAK AAEKLKRNT KL EVT E++K L++ M A++ R MMN IV RI FQE+F+++QLMN LGV+ IL G G GIE FVPK +VRH+EGEL R++ + + RMW+RLVGSSLEVY MK E ++ P YVV E P VH+V GV K+S + RV+VL GL+L A D DG+ W DAL RA WD SS K GG A
Sbjct: 5 TATKRSRIGHRLLLKMGLRKVGFCPMFDEAHEKYTWLTHYVEEMQESLSAYALQLARMTEAARGVGEDASHIYLVRERGFKPAVAFKEAQDMGHSGYAGQLQQALVKGVVEPIGEWLRDLESIEGLVTDFNEIRVQHDHYRLKVEDLSQKARALEARATTRGDSRDAKQAAEKLKRNTKKLNEVTVEFDKKLSSCCNRMTRAWEDREKMMNGIVARIVHFQESFFAEQLMNSLGVARILSAAEGGGPRWGGTMGIEPFVPKGHVRHYEGELLRKHMVMKERMWYRLVGSSLEVYDMKPKEGRDNTPMYVVTELPVTVHEVKGVTKVSGVNFRVTVLGGGETGGGGLNLYAADEVDGKGWMDALTRASEWDQLASSSKAAGIAPGGEA 391
BLAST of mRNA_H-paniculata_contig1227.1446.1 vs. uniprot
Match: A0A6H5KHT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHT2_9PHAE) HSP 1 Score: 385 bits (990), Expect = 1.310e-104 Identity = 205/377 (54.38%), Postives = 263/377 (69.76%), Query Frame = 1
Query: 202 SSTHKQRIGRRLLLKMGLRQSGFNQKFDDSHERYTYLKHYVHELHDSLEQYALQLARQTEAGRALGDVTGHLYEPRNNGFKSAIALKDAQEQNHSGFAGQIQQAFVKGIIEPVVDWKKELENMESLVTNFNDVRVQHDHYRLKVEDLATKAQLLEQRAMTHGDGKDAKAAAEKLKRNTGKLEEVTKEYEKALNAATTGMDNAFKGRLGMMNLIVGRISRFQETFYSQQLMNGLGVSSILGEEVP-----GLDAGIEEFVPKANVRHFEGELTRRYKITRARMWFRLVGSSLEVYSMKVGEEVEDDPSYVVIETPKAVHQVTGVQKISETHLRVSVLKEEH----GLHLVATDAADGQAWCDALERACVWDAHSSEKE 1305
++T + RIG RLLLKMGLR+ GF FD++HE+YT+L HYV E+ +SL YALQLAR TEA R +G+ H+Y R GFK A+A K AQ+ HSG+AGQ+QQA VKG++EP+ +W ++LE++E LVT+FN++RVQHDHYRLKVEDL+ KA+ LE RA T GD +DAK AAEKLKRNT KL EVT E++K L++ M A+ R MMN IV RI FQE+F+++QLMN LGV+ IL G GIE FVPK +VRH+EGEL R++ + + RMW+RLVGSSLE Y MK E ++ P YVV E P AV++V GV KIS + RV+VL GL+L A D DG+ W DAL RA WD +S +
Sbjct: 5 TATKRSRIGHRLLLKMGLRKVGFCPMFDEAHEKYTWLTHYVEEMQESLSAYALQLARMTEAARGVGEDASHIYLIRERGFKPAVAFKQAQDMGHSGYAGQLQQALVKGVVEPIGEWLRDLESIEGLVTDFNEIRVQHDHYRLKVEDLSQKARALEARATTRGDSRDAKQAAEKLKRNTKKLNEVTVEFDKKLSSCCNRMTRAWDDREKMMNGIVARIVHFQESFFAEQLMNSLGVARILSAAEGSGPRWGGTMGIEPFVPKGHVRHYEGELLRKHMVMKERMWYRLVGSSLEAYDMKPKEGRDNTPMYVVTELPVAVYEVKGVTKISGVNFRVTVLGGGETGGGGLNLYAADEVDGKGWMDALTRASEWDQLASSNK 381 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1227.1446.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1227.1446.1 >prot_H-paniculata_contig1227.1446.1 ID=prot_H-paniculata_contig1227.1446.1|Name=mRNA_H-paniculata_contig1227.1446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1708bp MVSSTHKQRIGRRLLLKMGLRQSGFNQKFDDSHERYTYLKHYVHELHDSLback to top mRNA from alignment at H-paniculata_contig1227:649..16880- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1227.1446.1 ID=mRNA_H-paniculata_contig1227.1446.1|Name=mRNA_H-paniculata_contig1227.1446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=16232bp|location=Sequence derived from alignment at H-paniculata_contig1227:649..16880- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1227:649..16880- >mRNA_H-paniculata_contig1227.1446.1 ID=mRNA_H-paniculata_contig1227.1446.1|Name=mRNA_H-paniculata_contig1227.1446.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=10248bp|location=Sequence derived from alignment at H-paniculata_contig1227:649..16880- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |