mRNA_H-paniculata_contig12269.1445.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12269.1445.1
Unique NamemRNA_H-paniculata_contig12269.1445.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: Q7XWZ9_ORYSJ (OSJNBa0079F16.4 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XWZ9_ORYSJ)

HSP 1 Score: 75.1 bits (183), Expect = 9.320e-14
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
            V +AVY LNR+PT+  +GRTPYE WH+  P + HLRVFGC A+V  +L    KLDD++  G F
Sbjct:  986 VVTAVYILNRSPTKALDGRTPYEAWHERKPGVSHLRVFGCLAFVK-ELGHIGKLDDRSTPGVF 1047
[Close]
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: Q0IU13_ORYSJ (Os11g0199800 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q0IU13_ORYSJ)

HSP 1 Score: 73.9 bits (180), Expect = 2.320e-13
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
            V +AVY LNR+PT+  +GRTPYE WH   P + HLRVFGC A+V  +L    KLDD++  G F
Sbjct:  782 VVTAVYILNRSPTKALDGRTPYEAWHGRKPGVSHLRVFGCLAFVK-ELGPISKLDDRSTPGVF 843
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BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: A0A0A9X689_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X689_LYGHE)

HSP 1 Score: 69.3 bits (168), Expect = 2.340e-13
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
              +AVY +NR+PT+   G TP EKW    P+L HLRVFGC AY     Q+R KLD K+R   F
Sbjct:   25 ANTAVYLINRSPTKKLPGVTPEEKWLGNKPDLSHLRVFGCPAYAHIPSQKRKKLDSKSRLLTF 87
[Close]
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: Q53LP5_ORYSJ (Retrotransposon protein, putative, Ty1-copia sub-class n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53LP5_ORYSJ)

HSP 1 Score: 73.9 bits (180), Expect = 2.370e-13
Identity = 34/63 (53.97%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
            V +AVY LNR+PT+  +GRTPYE WH   P + HLRVFGC A+V  +L    KLDD++  G F
Sbjct:  834 VVTAVYILNRSPTKALDGRTPYEAWHGRKPGVSHLRVFGCLAFVK-ELGPISKLDDRSTPGVF 895
[Close]
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: A0A0V1GX97_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GX97_9BILA)

HSP 1 Score: 73.6 bits (179), Expect = 2.800e-13
Identity = 32/63 (50.79%), Postives = 39/63 (61.90%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
            V +A Y LNR P R    +TPYEKW ++ P ++HLR+FGC AYV    Q R K D KAR   F
Sbjct:   82 VHTAAYLLNRIPNRKETTKTPYEKWFEKRPTVEHLRIFGCDAYVHIPDQHRKKFDRKARKVIF 144
[Close]
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: A0A0V1GQ65_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1GQ65_9BILA)

HSP 1 Score: 72.4 bits (176), Expect = 7.470e-13
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
            V +A Y LNR P R    +TPYEKW  + P ++HLR+FGC AYV    Q R K D KAR   F
Sbjct:  211 VHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQHRNKFDRKARKVIF 273
[Close]
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: UPI000DF4E0C1 (uncharacterized protein LOC112892555 n=1 Tax=Panicum hallii TaxID=206008 RepID=UPI000DF4E0C1)

HSP 1 Score: 72.4 bits (176), Expect = 8.060e-13
Identity = 39/86 (45.35%), Postives = 51/86 (59.30%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF--WRT-TKTA*VISFITRKTRAS 249
            V +AVY LNRAPTR   G+TPYE WH + P++DHLR FGC A+V        KL D++    F  + T TK   V   +T+K + S
Sbjct:  593 VHTAVYLLNRAPTRSLKGKTPYEAWHKKKPSVDHLRTFGCVAHVKKTGPGVTKLSDRSTPMLFVGYETRTKGYRVYDPVTKKLQVS 678
[Close]
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: A0A0V1M2B3_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella papuae TaxID=268474 RepID=A0A0V1M2B3_9BILA)

HSP 1 Score: 72.4 bits (176), Expect = 8.100e-13
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
            V +A Y LNR P R    +TPYEKW  + P ++HLR+FGC AYV    Q R K D KAR   F
Sbjct:  606 VHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQHRKKFDRKARKVIF 668
[Close]
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: A0A0V1MB43_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1MB43_9BILA)

HSP 1 Score: 72.4 bits (176), Expect = 8.200e-13
Identity = 32/63 (50.79%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:    1 VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
            V +A Y LNR P R    +TPYEKW  + P ++HLR+FGC AYV    Q R K D KAR   F
Sbjct:  606 VHTAAYLLNRIPNRKETTKTPYEKWFGKRPTVEHLRIFGCDAYVHIPDQHRKKFDRKARKVIF 668
[Close]
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Match: A0A4Y2LMC7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=39 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LMC7_ARAVE)

HSP 1 Score: 72.4 bits (176), Expect = 8.210e-13
Identity = 34/61 (55.74%), Postives = 40/61 (65.57%), Query Frame = 1 
Query:    7 SAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQRYKLDDKARAGCF 189
            +A Y  NR PT+P   +TPYE W +  PNL H+RVFGC AYV  Q Q+R KLD KA  G F
Sbjct:  678 TATYLQNRLPTKPKR-KTPYELWTNLKPNLSHIRVFGCKAYVYIQKQKRGKLDSKAVEGIF 737
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12269.1445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q7XWZ9_ORYSJ9.320e-1453.97OSJNBa0079F16.4 protein n=1 Tax=Oryza sativa subsp... [more]
Q0IU13_ORYSJ2.320e-1353.97Os11g0199800 protein n=1 Tax=Oryza sativa subsp. j... [more]
A0A0A9X689_LYGHE2.340e-1350.79Retrovirus-related Pol polyprotein from transposon... [more]
Q53LP5_ORYSJ2.370e-1353.97Retrotransposon protein, putative, Ty1-copia sub-c... [more]
A0A0V1GX97_9BILA2.800e-1350.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1GQ65_9BILA7.470e-1350.79Retrovirus-related Pol polyprotein from transposon... [more]
UPI000DF4E0C18.060e-1345.35uncharacterized protein LOC112892555 n=1 Tax=Panic... [more]
A0A0V1M2B3_9BILA8.100e-1350.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A0V1MB43_9BILA8.200e-1350.79Retrovirus-related Pol polyprotein from transposon... [more]
A0A4Y2LMC7_ARAVE8.210e-1355.74Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12269contigH-paniculata_contig12269:583..863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score73.2
Seed ortholog evalue5.6e-11
Seed eggNOG ortholog4558.Sb03g040848.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size281
Cds size213
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.8819036-UTR-H-paniculata_contig12269:582..6501622928948.8819036-UTR-H-paniculata_contig12269:582..650Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12269 583..650 -
1691480678.1512094-UTR-H-paniculata_contig12269:582..6501691480678.1512094-UTR-H-paniculata_contig12269:582..650Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12269 583..650 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928948.907241-CDS-H-paniculata_contig12269:650..8631622928948.907241-CDS-H-paniculata_contig12269:650..863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12269 651..863 -
1691480678.1631708-CDS-H-paniculata_contig12269:650..8631691480678.1631708-CDS-H-paniculata_contig12269:650..863Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12269 651..863 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12269.1445.1prot_H-paniculata_contig12269.1445.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12269 651..863 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12269.1445.1

>prot_H-paniculata_contig12269.1445.1 ID=prot_H-paniculata_contig12269.1445.1|Name=mRNA_H-paniculata_contig12269.1445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp
VRSAVYCLNRAPTRPHNGRTPYEKWHDETPNLDHLRVFGCTAYVMFQLQQ
RYKLDDKARAGCFWRTTKTA*
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mRNA from alignment at H-paniculata_contig12269:583..863-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12269.1445.1 ID=mRNA_H-paniculata_contig12269.1445.1|Name=mRNA_H-paniculata_contig12269.1445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=281bp|location=Sequence derived from alignment at H-paniculata_contig12269:583..863- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGCTCAGCAGTGTACTGCCTAAATCGCGCCCCGACCCGACCGCACAA
CGGAAGAACGCCGTACGAAAAATGGCACGACGAGACACCAAATTTGGACC
ACCTTCGCGTCTTCGGCTGCACGGCGTATGTTATGTTCCAGTTGCAGCAG
AGATATAAACTCGACGACAAAGCACGGGCGGGGTGTTTCTGGCGTACGAC
GAAGACAGCCTGAGTTATCTCGTTTATAACCCGGAAAACAAGAGCGTCCA
GTTGAGCAGGAACGTGAGATTTGACGAAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig12269:583..863-

>mRNA_H-paniculata_contig12269.1445.1 ID=mRNA_H-paniculata_contig12269.1445.1|Name=mRNA_H-paniculata_contig12269.1445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig12269:583..863- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGCGCTCAGCAGTGTACTGCCTAAATCGCGCCCCGACCCGACCGCACAA
CGGAAGAACGCCGTACGAAAAATGGCACGACGAGACACCAAATTTGGACC
ACCTTCGCGTCTTCGGCTGCACGGCGTATGTTATGTTCCAGTTGCAGCAG
AGATATAAACTCGACGACAAAGCACGGGCGGGGTGTTTCTGGCGTACGAC
GAAGACAGCCTGAGTGCGCTCAGCAGTGTACTGCCTAAATCGCGCCCCGA
CCCGACCGCACAACGGAAGAACGCCGTACGAAAAATGGCACGACGAGACA
CCAAATTTGGACCACCTTCGCGTCTTCGGCTGCACGGCGTATGTTATGTT
CCAGTTGCAGCAGAGATATAAACTCGACGACAAAGCACGGGCGGGGTGTT
TCTGGCGTACGACGAAGACAGCCTGA
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