mRNA_H-paniculata_contig12257.1438.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig12257.1438.1
Unique NamemRNA_H-paniculata_contig12257.1438.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig12257.1438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig12257contigH-paniculata_contig12257:2952..3437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size488
Cds size426
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.8577347-CDS-H-paniculata_contig12257:2951..33771622928947.8577347-CDS-H-paniculata_contig12257:2951..3377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12257 2952..3377 +
1691480677.6658707-CDS-H-paniculata_contig12257:2951..33771691480677.6658707-CDS-H-paniculata_contig12257:2951..3377Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig12257 2952..3377 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928947.8774083-UTR-H-paniculata_contig12257:3377..34371622928947.8774083-UTR-H-paniculata_contig12257:3377..3437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12257 3378..3437 +
1691480677.674027-UTR-H-paniculata_contig12257:3377..34371691480677.674027-UTR-H-paniculata_contig12257:3377..3437Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig12257 3378..3437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig12257.1438.1prot_H-paniculata_contig12257.1438.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig12257 2952..3377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig12257.1438.1

>prot_H-paniculata_contig12257.1438.1 ID=prot_H-paniculata_contig12257.1438.1|Name=mRNA_H-paniculata_contig12257.1438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
NDLRAGLDGTGGGNSARSSIRHPYAVVNARHQLADAHAVLWPASKPDRSL
QIKPSTRARLLPFQPFHDATSVLHSCVFLPCKFYCHCYYDYHDYYFNFLV
AISSRTMPSAGCHCRFASFLSNIFDAHGEHAHLYFGTSSVP*
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mRNA from alignment at H-paniculata_contig12257:2952..3437+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig12257.1438.1 ID=mRNA_H-paniculata_contig12257.1438.1|Name=mRNA_H-paniculata_contig12257.1438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at H-paniculata_contig12257:2952..3437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGATCTACGAGCAGGGTTAGATGGGACGGGGGGCGGGAATTCTGCGAG
AAGTTCAATCCGCCACCCGTACGCGGTTGTAAACGCGAGACACCAACTGG
CAGACGCTCATGCTGTGCTGTGGCCAGCCTCCAAACCAGACCGATCCTTA
CAAATCAAACCATCCACCCGTGCTCGTCTACTGCCTTTCCAGCCTTTTCA
TGATGCAACGTCCGTCCTTCATTCCTGTGTTTTTTTACCGTGTAAATTTT
ATTGCCATTGTTACTACGATTATCATGATTATTATTTCAACTTTTTGGTT
GCAATTTCATCCCGTACAATGCCTTCAGCCGGTTGCCATTGCCGTTTTGC
TTCGTTTCTCTCCAACATTTTCGACGCCCACGGAGAACACGCGCACCTTT
ATTTCGGTACTTCCTCCGTCCCATAAGTCTGTGACGTTGATGGTGTAACC
TGTTGCAAGTGTTTTTTGCGTCGAATCCCTTGGTGG
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Coding sequence (CDS) from alignment at H-paniculata_contig12257:2952..3437+

>mRNA_H-paniculata_contig12257.1438.1 ID=mRNA_H-paniculata_contig12257.1438.1|Name=mRNA_H-paniculata_contig12257.1438.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig12257:2952..3437+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AATGATCTACGAGCAGGGTTAGATGGGACGGGGGGCGGGAATTCTGCGAG
AAGTTCAATCCGCCACCCGTACGCGGTTGTAAACGCGAGACACCAACTGG
CAGACGCTCATGCTGTGCTGTGGCCAGCCTCCAAACCAGACCGATCCTTA
CAAATCAAACCATCCACCCGTGCTCGTCTACTGCCTTTCCAGCCTTTTCA
TGATGCAACGTCCGTCCTTCATTCCTGTGTTTTTTTACCGTGTAAATTTT
ATTGCCATTGTTACTACGATTATCATGATTATTATTTCAACTTTTTGGTT
GCAATTTCATCCCGTACAATGCCTTCAGCCGGTTGCCATTGCCGTTTTGC
TTCGTTTCTCTCCAACATTTTCGACGCCCACGGAGAACACGCGCACCTTT
ATTTCGGTACTTCCTCCGTCCCATAAAATGATCTACGAGCAGGGTTAGAT
GGGACGGGGGGCGGGAATTCTGCGAGAAGTTCAATCCGCCACCCGTACGC
GGTTGTAAACGCGAGACACCAACTGGCAGACGCTCATGCTGTGCTGTGGC
CAGCCTCCAAACCAGACCGATCCTTACAAATCAAACCATCCACCCGTGCT
CGTCTACTGCCTTTCCAGCCTTTTCATGATGCAACGTCCGTCCTTCATTC
CTGTGTTTTTTTACCGTGTAAATTTTATTGCCATTGTTACTACGATTATC
ATGATTATTATTTCAACTTTTTGGTTGCAATTTCATCCCGTACAATGCCT
TCAGCCGGTTGCCATTGCCGTTTTGCTTCGTTTCTCTCCAACATTTTCGA
CGCCCACGGAGAACACGCGCACCTTTATTTCGGTACTTCCTCCGTCCCAT
AA
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